LOC122328345 (LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944)


Basic Information

Item Value
gene id LOC122328345
gene name LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13824959 ~ 13831445 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223990.1
GGAATAGAGCACTATTTGTGTGTAACTGCTGTGCTTGAAAGTTTTATACACCTCTCGTGATCCTCTTCATTCGCTCGGCTTCTGTCCAATGTCTTTTCAATTGTCTGGCTTCTGTGCAACTCGTTCTTGAACCCTGCTTATATTCTGTCGGGGTGTGGGGCATGTGGGGGTGACCAGATGGCCCTCAGTGTGTAGTTTAGAGGCGAAGCTATTGGAGACGTGTTTGTTGAAAGGAGAAGCAAGGTGCAGACAAGCGATGGGATGCTGCAGTGTGACCCAGAGGCATACAGGGACTGATGAAGTGGGCCCAGATGAGATCGAACTCCTGGAAATCAGCAATGCAGGAATCTGGAGTCTTGCTGAATGCAGGCTCCAAATATCCACAAGGAATGGCACCGATGAAGGTCCTCATCGCTGTCCCTCTGTGAGGCACCTGAAGCAGGAGGACCCAGATCCTGTCTCTGTGAATGTGAAggacacaacaaaacacaacaattcAAAACTTGTGCTTTGGGGCTTGACCAAAAAGGAGCTCCATCATAGGCTATACACTCAATCTATCAGAGAATGGGAAGGACAGGAACCACACACCTATGGAGACATTATCCACTCATCTTCAGTGTATTTACACAGTGGATTCACAAAGGCTATGAGTGAAAGATACCTGGTTTTATTTTCCTTCCATTTGTTAATCCTAGCTTTGGACAGCTcgaataatgaatttatttatgaGGGCATTCTTCCGCTCTCGGCCATTGAGGTGCGTCTGATTGCACAGCAGGAACCCGGTTCTCCGCATATGTTTGAGATAAGCGGGCCTATGGTGGACTCAAAGATATTCGTTTGTGCTACTGCTGCTGAAACAAAAGCCTGGATGGAGAACATTGAGGACAGGAGATACAAATCTCTAAGGCAACAGCTGAGCCCATCCCATAGTGCTCTCTCATACCTGGTGCCCTGTAATGAAAACTGGAAGAGAGAGGAGCTTAAAAGGTACTTACTGCGGTCTCCCATCTTGCATTGGGAGGGGTCGCCCATTCAGCACATGGGCTATCCCAGATACCTTTCACTGGTGCACATCAGCAACGTAAACACACAGGACCGGCGTTTGCTGGGACCTCAGGAGCGTTTGCTTGTGCTCTTCCCATGTGACCTCCTCATTCTGTCTCTCGACTGCCATCGTGTTCGTGTGAAATATGAAGGCCGTCTGCCACTAAAGAGTATTAAGGCCATGGAAAGATCTGCATTACCTGGCAGATTGGAGTTTGAACTTAGAGGTGAACTGATGGAGCCTCTGCTTGTCTCTTGCACTCAACCTGAGGACTATCAAAGCTGGATCTTCCAGTTACAACAGCCTGATAAAGTGGCAGATTCATTGCCACATCATACCCCTCCACCTCTGATGCCGAAGAAGCGCAGAAGTTAAAGATGTGACGGATGGAAATTAAAACGTGAACTCCATATATTGTGCCCAATGAAAGCTGCTGAtgacaaatgaacattttaccATTGCATTTCACCCCCAAGTAACAAATCTATTCACTGCTTGTGAGAAAATATCTTCAATAACTAGGAAACTTGCAGGCTTAGACAGTAATACAGTCCACTCCAAAATAATCTTCTTTGAGGTCGGGAGTGGAAATGTAGCCTACcgtgtattaaaatgattacaaacatttaaatgtgatgtaataaattgttttaattagtaattaa
>XM_043223991.1
AACAGGAAGGAATAGAGCACTATTTGTGTGTAACTGCTGTGCTTGAAAGTTTTATACACCTCTCGTGATCCTCTTCATTCGCTCGGCTTCTGTCCAATGTCTTTTCAATTGTCTGGCTTCTGTGCAACTCGTTCTTGAACCCTGCTTATATTCTGTCGGGGTGTGGGGCATGTGGGGGTGACCAGATGGCCCTCAGTGTGTAGTTTAGAGGCGAAGCTATTGGAGACGTGTTTGTTGAAAGGAGAAGCAAGGTGCAGACAAGCGATGGGATGCTGCAGTGTGACCCAGAGGCATACAGGGACTGATGAAGTGGGCCCAGATGAGATCGAACTCCTGGAAATCAGCAATGCAGGAATCTGGAGTCTTGCTGAATGCAGGCTCCAAATATCCACAAGGAATGGCACCGATGAAGGTCCTCATCGCTGTCCCTCTGTGAGGCACCTGAAGCAGGAGGACCCAGATCCTGTCTCTGTGAATGTGAAggacacaacaaaacacaacaattcAAAAGAGCTCCATCATAGGCTATACACTCAATCTATCAGAGAATGGGAAGGACAGGAACCACACACCTATGGAGACATTATCCACTCATCTTCAGTGTATTTACACAGTGGATTCACAAAGGCTATGAGTGAAAGATACCTGGTTTTATTTTCCTTCCATTTGTTAATCCTAGCTTTGGACAGCTcgaataatgaatttatttatgaGGGCATTCTTCCGCTCTCGGCCATTGAGGTGCGTCTGATTGCACAGCAGGAACCCGGTTCTCCGCATATGTTTGAGATAAGCGGGCCTATGGTGGACTCAAAGATATTCGTTTGTGCTACTGCTGCTGAAACAAAAGCCTGGATGGAGAACATTGAGGACAGGAGATACAAATCTCTAAGGCAACAGCTGAGCCCATCCCATAGTGCTCTCTCATACCTGGTGCCCTGTAATGAAAACTGGAAGAGAGAGGAGCTTAAAAGGTACTTACTGCGGTCTCCCATCTTGCATTGGGAGGGGTCGCCCATTCAGCACATGGGCTATCCCAGATACCTTTCACTGGTGCACATCAGCAACGTAAACACACAGGACCGGCGTTTGCTGGGACCTCAGGAGCGTTTGCTTGTGCTCTTCCCATGTGACCTCCTCATTCTGTCTCTCGACTGCCATCGTGTTCGTGTGAAATATGAAGGCCGTCTGCCACTAAAGAGTATTAAGGCCATGGAAAGATCTGCATTACCTGGCAGATTGGAGTTTGAACTTAGAGGTGAACTGATGGAGCCTCTGCTTGTCTCTTGCACTCAACCTGAGGACTATCAAAGCTGGATCTTCCAGTTACAACAGCCTGATAAAGTGGCAGATTCATTGCCACATCATACCCCTCCACCTCTGATGCCGAAGAAGCGCAGAAGTTAAAGATGTGACGGATGGAAATTAAAACGTGAACTCCATATATTGTGCCCAATGAAAGCTGCTGAtgacaaatgaacattttaccATTGCATTTCACCCCCAAGTAACAAATCTATTCACTGCTTGTGAGAAAATATCTTCAATAACTAGGAAACTTGCAGGCTTAGACAGTAATACAGTCCACTCCAAAATAATCTTCTTTGAGGTCGGGAGTGGAAATGTAGCCTACcgtgtattaaaatgattacaaacatttaaatgtgatgtaataaattgttttaattagtaattaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107591092

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223990.1 True 1716 mRNA 0.46 12 13824967 13831445
XM_043223991.1 False 1697 mRNA 0.45 12 13824959 13831445

Neighbor

gene id symbol gene type direction distance location
ttll10 LOC107591093,LOC107716116,LOC107593935,LOC107687423 coding upstream 422 13804114 ~ 13824537 (+)
ptpn11b ptpn11b,LOC107591094,LOC107737552,LOC107593936,LOC107673095,LOC107687422,LOC107716115 coding upstream 46285 13751746 ~ 13778674 (+)
agrn agrn,LOC107591095,LOC107673061,LOC107593945,LOC107737670,LOC107716114 coding upstream 77787 13538953 ~ 13747172 (+)
plekhn1 plekhn1,LOC107737554,LOC107703054,LOC107716110,LOC107687418 coding upstream 389092 13422930 ~ 13435867 (+)
klhl17 klhl17,LOC107737556,LOC107687417,LOC107572648 coding upstream 407705 13402017 ~ 13417254 (+)
clcnk clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941 coding downstream 73643 13905088 ~ 13911750 (+)
szrd1 szrd1,LOC107673108,LOC107716129,LOC107687433,LOC107737539,LOC107591082 coding downstream 176775 14008220 ~ 14012879 (+)
mlh3 LOC107673081,LOC107591079,LOC107737666,LOC107687437 coding downstream 213338 14044783 ~ 14050528 (+)
kansl2 kansl2,LOC107687436,LOC107716132,LOC107737532,LOC107591080,LOC107673082,LOC107593923 coding downstream 219246 14050691 ~ 14056567 (+)
LOC122329331 NA coding downstream 222919 14054364 ~ 14054500 (+)
G157408 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052 non-coding upstream 329583 13411670 ~ 13495376 (+)
G157410 LOC107737553,LOC107703053,LOC107591147,LOC107687419,LOC107716113 non-coding upstream 383008 13438275 ~ 13441951 (+)
G157329 NA non-coding upstream 709785 13114958 ~ 13115174 (+)
G157326 NA non-coding upstream 718002 13106460 ~ 13106957 (+)
G157317 NA non-coding upstream 784547 12989801 ~ 13040412 (+)
G157423 LOC106566923 non-coding downstream 27520 13858965 ~ 13862206 (+)
G157459 NA non-coding downstream 66386 13897831 ~ 13901092 (+)
G157446 epha2b,epha2,LOC107737541,LOC107591085,LOC107716125,LOC107687430,LOC107593930,LOC102306962,LOC102194419 non-coding downstream 106998 13938443 ~ 13939354 (+)
G157471 epha2 non-coding downstream 107961 13939406 ~ 13939898 (+)
G157472 NA non-coding downstream 108833 13940278 ~ 13940490 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1572977 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2078389 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2092598 11730980 ~ 11732361 (+)
G156586 NA other upstream 2647926 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 2739355 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 262633 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 468256 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 772348 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 778084 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 849415 14680860 ~ 14686618 (+)

Expression


Co-expression Network