LOC122328350 (LOC107712654,LOC107737705,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469)


Basic Information

Item Value
gene id LOC122328350
gene name LOC107712654,LOC107737705,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12524471 ~ 12525910 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224000.1
CAGATCTCATCCGATCCTGACGGAGAACTGAACACAAGACACACAGCCATGGCTCCTACAATCACTGGATCGATCATCAGCAGAGAACAGCTTCCTCTCACAAACAAGCTGAGAAAGCCAATAGTGGAGAAGATCCGGAGAGAACGAATCAACAGCAGCATCGAGAAGCTCAAGTCTCTTCTGGGTCAAGAGTTCCTGAAGCAACAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTGGATTTCTTGAGACGCCAGCAGCGCTCCCAGAGTCCCTCGGCGTGCGGCTCTCCTGCAGCTCGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTCCTGTCTCAGTGTCCAGTGCAGACGGAGTCCCACAGAAGACTGCTGAAGCACTTCCTGCACACGCAGCCCTGCACAGAGAACAAGACACGAGTGCCTCAGATCAGTCCAGCGGCCGCTCAGAGCAGCGGCAAAGAGCAGACTCTGGCGCTCTGGAGACCCTGGTAGAGATTTAGCAGACAGAATTCATAATGTCAGTCTGAGATTGGCATGGACTGAAATTCAAACGTAGGAATTGATTTCCGCTCTCCTGCTTTTGCAGGACCTTTAATCTGCTTTCAGAGAAAGCTTGTGTTTCACTCAAACTGTATGATCGGTGATATTTGACCAGAATCTACAGAATCATTTGCTGTGTAAAATGATTgctacatttttgacatttcataTTTAGAGAAAAGTTCAAGTCTGATTCAGACGTTTGAGCTCCTTTAGCTCTTTCACCCATATTGGGTTTATTCTCTCTGCATCTAAAGGATGATGACGCTGCTTTCATTTACTGAGAgctttttgttatatttctgtTGTTTCAAACAGATCTAATTCTTCTCTTATTATAtgagaaacattttttgttatttgaaggaatgatttaattgtgtgtttaaagCACAAATGattgtttgcatgtgtttacATGAATGAGACGTTTCCCCTGTAAAGggcatttttttatcatcactGTTAGTGATTTCAAGTTATTCTTTGTATTCAAGCTCAAGTTTGTACCTTCTGTGAAGGTGTCTTGCATTGCACATTGCACTGGCTTAACCATTTTCAATGTCTGTGACATTGTTAGTTTCTTCCCAGTTAAAGAAAACTTCAGATATAATAACATGAGTTATtcatgtgtgtgaaaatatgtaTTGACATATTGTTACTGATGTTACtgctttgttcatttgtttgtaaatgttcGGTGTCAGATTTACTCACATATGAAGAGCAGCAATCATATTGCTTATGACAAATAAATTGTACAATCAGAGA

Function

NR:

description
PREDICTED: transcription factor HES-5-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224000.1 True 1338 mRNA 0.42 2 12524471 12525910

Neighbor

gene id symbol gene type direction distance location
LOC122329206 tas1r1,LOC107593439,LOC107712676,LOC107687455 coding upstream 9300 12510231 ~ 12515171 (+)
iffo2a LOC107737575,LOC107712691,LOC107703080,LOC107591153,LOC107593384,LOC107687398 coding upstream 15469 12491866 ~ 12509002 (+)
ubr4 ubr4,LOC107687395 coding upstream 33617 12450270 ~ 12490854 (+)
emc1 emc1,LOC107593385,LOC107591116 coding upstream 74939 12441056 ~ 12449532 (+)
kcnab2b kcnab2b,LOC107687393,LOC105894315,LOC107712982,LOC107672035,LOC107737578,LOC108434650,LOC108276490 coding upstream 140360 12332606 ~ 12384111 (+)
draxinb LOC107703074,LOC107591150,LOC107737703,LOC107712672,LOC107593437,LOC107687472 coding downstream 10788 12536698 ~ 12541914 (+)
icmt icmt,LOC107703075,LOC107591113,LOC107593379,LOC107687399 coding downstream 16401 12542311 ~ 12545517 (+)
LOC122329204 rpl22,LOC102779685 coding downstream 28287 12554197 ~ 12555217 (+)
arhgef10lb arhgef10lb,LOC107703072,LOC107591110,LOC107712685,LOC107687400,LOC107737571 coding downstream 37457 12563367 ~ 12600467 (+)
igsf21b igsf21b,LOC107712688,LOC107737570,LOC107687403,LOC107593375,LOC107591133,LOC107703070 coding downstream 76224 12602134 ~ 12612361 (+)
G157084 NA non-coding upstream 138090 12353090 ~ 12386381 (+)
G157081 NA non-coding upstream 278370 12245874 ~ 12246101 (+)
G157079 NA non-coding upstream 283070 12239849 ~ 12241401 (+)
G156931 NA non-coding upstream 319076 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 349556 12174530 ~ 12174915 (+)
G157265 NA non-coding downstream 203134 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 327331 12853241 ~ 12853832 (+)
G157317 NA non-coding downstream 463891 12989801 ~ 13040412 (+)
G157326 NA non-coding downstream 580550 13106460 ~ 13106957 (+)
G157329 NA non-coding downstream 589048 13114958 ~ 13115174 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 272489 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 777901 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 792110 11730980 ~ 11732361 (+)
G156586 NA other upstream 1347438 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1438867 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1568168 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1773791 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2077883 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2083619 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 2154950 14680860 ~ 14686618 (+)

Expression


Co-expression Network