LOC122328351 (LOC107737705,LOC107712654,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469)


Basic Information

Item Value
gene id LOC122328351
gene name LOC107737705,LOC107712654,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12521821 ~ 12531561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224001.1
TCCTGACGGAGAACTGAACACAAGACACACAGCCATGGCTCCTACAATCACTGGATCGATCATCAGCAGAGAACAGCTTCCTCTCACAAACAAGCTGAGAAAGCCAATAGTGGAGAAGATCCGCAGAGAACGAATCAACAGCAGCATCGAGAAGCTCAAGTCTCTTCTGGGTCAAGAGTTCCTGAAGCAACAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTGGATTTCTTGAGACGCCAGCAGCGCTCCCAGAGTCCCTCGGCGTGCGGCTCTCCTGCAGCTCGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTCCTGTCTCAGTGTCCAGTGCAGACGGAGTCCCACAGAAGACTGCTGAAGCACTTCCTGCACACGCAGCCCTGCACAGAGAACAAGACACGAGTGCCTCAGATCAGTCCAGCGGCCGCTCAGAGCAGCGGCAAAGAGCAGACTCTGGCGCTCTGGAGACCCTGGTAGAAGCAGTTCTATGTGAATGTGAACTACCACGATTTACTCTGTTTTTAGAGAACATGTTATTCGATATCTACTCTTTTATGAGAGAGCAATTGACTGTATTCCTATATTTGGATCAGATTGTATTTTTGCCATTGGCAAATTATGCTTCAAGCTAATTGAATCTGCTATGTTAGCAATTATATATCTCATACTGAGATGCAATATTGATATTCTATGAACATGATTCCTGATTCTAAATAGATCCAATGgatcttgtgatttttttaaacctcttgttctattttgaatatttaagtgTTGGTGTTGTAGATTTTATATAATCAACTATATGACCAACAAATTCTTTTATAAAGGTTATTTAAGTAACTGTGTTTTAAACAAGTGACTGATGTGTCTAACAATCAAGCAAACTGGTGGAAAAACAATGTTAAGCACAAAATGAAGATGCTGGATATCatctgcaaatgttttattaaagaaatgtctATTTTACATCTGA

Function

NR:

description
PREDICTED: transcription factor HES-5-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224001.1 True 1004 mRNA 0.43 3 12521821 12531561

Neighbor

gene id symbol gene type direction distance location
her12 LOC107703051,LOC107591151,LOC107737706,LOC107593438,LOC107687468,LOC107712674 coding downstream 2628 12516922 ~ 12519193 (-)
megf6a megf6a,LOC107687467,LOC107593418,LOC107712656,LOC107671929 coding downstream 81561 12384843 ~ 12440260 (-)
znf362b znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding downstream 309717 12204333 ~ 12212104 (-)
taf13 taf13,LOC107671955 coding downstream 455649 12065347 ~ 12066172 (-)
LOC122329006 LOC107712662,LOC107593423,LOC107699566 coding downstream 473030 12047116 ~ 12048791 (-)
rnf207b rnf207b,LOC107591112,LOC107712689,LOC107593377,LOC107737674 coding upstream 14510 12546071 ~ 12553730 (-)
rcc2 rcc2,LOC107687402,LOC107703073,LOC107712686,LOC107737572 coding upstream 23850 12555411 ~ 12561675 (-)
vps13d vps13d,LOC107703069,LOC107687459,LOC107712684 coding upstream 90509 12622070 ~ 12661132 (-)
lrrc38a LOC107703049,LOC107737569,LOC107591108,LOC107712669,LOC107687405 coding upstream 133440 12665001 ~ 12673819 (-)
ephb2a LOC107703068,LOC107593373,LOC107687404 coding upstream 143258 12674819 ~ 12725051 (-)
G157106 NA non-coding downstream 268885 12252731 ~ 12252936 (-)
G157104 LOC107737579,LOC107565833,LOC107672049,LOC107712694,LOC107593419,LOC107687392 non-coding downstream 269840 12246217 ~ 12251981 (-)
G157102 NA non-coding downstream 278140 12243091 ~ 12243681 (-)
G157100 NA non-coding downstream 280405 12239934 ~ 12241416 (-)
G157022 NA non-coding downstream 347634 12173386 ~ 12174187 (-)
G157224 NA non-coding upstream 2197 12533758 ~ 12533979 (-)
G157255 NA non-coding upstream 87458 12619019 ~ 12620057 (-)
G157295 NA non-coding upstream 321678 12853239 ~ 12853501 (-)
G157298 NA non-coding upstream 322736 12854297 ~ 12855852 (-)
G157349 NA non-coding upstream 498305 13029866 ~ 13040397 (-)
G156985 NA other downstream 597171 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 663853 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 720189 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 775201 11741400 ~ 11746620 (-)
G157367 NA other upstream 609517 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 748695 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 1691248 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 1795405 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 2038786 14570347 ~ 14589622 (-)

Expression


Co-expression Network