LOC122328356 (pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856)


Basic Information

Item Value
gene id LOC122328356
gene name pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7784305 ~ 7788287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224007.1
ACAACTTCTCCCCGGTCACCCAATGTTTAGCATAAAGGTTTGAAATTCATCACATTTGACCTGAGATTTAATGATTTAACTTTAAGCGACGTTAAGCAACGTAAGCAAAATATAGTTttgctcaaaaaataaataaaataaaaacgaataaatTTTGCATGCATCTATTTACAGCCTGGAGAGTCAGTCGTGTAAGATCAGGAAGGAAGTGGGTAAGTAAAGAAATGATCATCATAGCCAAAACGCACCGGGATGTGAGGGGTTAACCTTCTCTTcgcggtgcattgtgggatagcGAATGATCAGCGATGGCGGCCAGACTAAAGCGTCTGAAACTTTTCGTGGTAACTTATTTGCATGTAACGTTCCTGTCTTTGCACGCGTTTACCGACGCGGCGGACGTGGCGTGGGATGAAAACGGATACATCCTGTACTGTCCGTGCATGGGTCGGTTCGGAAACCAAGTGGATCATTTCCTCGGATCGCTGGCTTTTGCTAAAATGCTGAACCGAACGCTCGCGGTTCCGCCGTGGATTGTTTACCGGCATCTCCCgccttttcaaaatGTGCATGTTCCCTACAGTGAGTATTTCCAATTGGAGCCAGTGAAGCAGTACCACCGTGTGGTGAGTCTGGAGGACTTCATGGAGCACTTGGCTCCTAAGCACTGGCCCCCGGGTCAGAGAGTGGCCTACTGCTTCGAATCTGCAGCTCAGAGGAGCGTAGACAAAAAGAGCTGTCCCATGAAGGACGGAAATCCTTTCGGCCCCTTTTGGGACCATATCGGAGTCGACTTTGATGGCTCCGTTCTCTTCGGAGGACTGTCGTTCAGCTCGTACTATCAGCCTCACTGGATAAAAAGGTTTCCTCCGAAAGAGCATCCAGTTCTCGCTCTTCCAGGAGCCCCCGCGCAGTTCCCCATTCTAGAGGAGCACATCGGACTGCAGGAGTATGTGGTGTGGTCTGAAAAAATGGTACAGGAAGGAGAAGACCACATCAGAAGCCTGCTAAACAGACCCTACGTGGGAATTCATCTGAGAATCGGCTCGGACTGGCAAAATGCCTGCAAGCTTCTGAAGTCGGGTGAAACCGGTCCTCACTTCATGGCATCTCCGCAGTGTGTGGGATACGAGCGCCAGACCGCCCTGCCGCTGACCATGGACATGTGTTTACCAGACCTGCCTGAGATCCGCCGCGCCGTCAAGCTCTGGGTGAAGATCACCAACGCTCAGTCCGTTTACATCGCCACCGACTCCGAATCACACGCCGCAGAGATTCAGAGACTCTTCAGGGGCAAGGTGAAGGTGGTGAGCTTGCAGCCGGACACCGCTCAGATCGACCTGTATGTCCTCGGTCAGGCCGATCACTTCATCGGCAACTGCGTTTCGTCTTTCTCGGCCTTCGTTAAAAGGGAGAGAGACGTTCGCGGGAGACCCTCGTCGTTCTTTGGGATGGACTACCTGggaaaaaggaaaggaaaggaggAGCTCTGATAAAAATGAAGATGTTACGTTTTTTGTAACTGAAGGGTGGTTGAGGTTTTGCATGTTTCAGGTGTCTGGGCAGATTTTGGACAAGAACGTTTGGATAGGGTTCACGTAATCAAATGAAG

Function

symbol description
pofut1 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to be involved in protein O-linked fucosylation and regulation of Notch signaling pathway. Predicted to act upstream of or within Notch signaling pathway and fucose metabolic process. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Dowling-Degos disease. Orthologous to human POFUT1 (protein O-fucosyltransferase 1).

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224007.1 True 1612 mRNA 0.50 8 7784305 7788287

Neighbor

gene id symbol gene type direction distance location
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 1588 7774301 ~ 7782717 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding downstream 258804 7522064 ~ 7525501 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding downstream 441606 7310570 ~ 7342699 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding downstream 693061 7088177 ~ 7091244 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding downstream 724054 7008897 ~ 7060251 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding upstream 33835 7822122 ~ 7832584 (-)
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 66017 7854304 ~ 7861354 (-)
LOC122328942 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 73916 7862203 ~ 7866387 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding upstream 133966 7922253 ~ 7932104 (-)
LOC122329207 hck,LOC107681869,LOC107707747,LOC107690859,LOC107747493 coding upstream 144156 7932443 ~ 7954995 (-)
G155629 NA non-coding downstream 300100 7483923 ~ 7484205 (-)
G155628 NA non-coding downstream 301813 7482027 ~ 7482492 (-)
G155627 oprl1,LOC107705672,LOC107681404,LOC107666560,LOC107727003,LOC107559467 non-coding downstream 303735 7479495 ~ 7480570 (-)
G155624 NA non-coding downstream 323003 7460929 ~ 7461302 (-)
G155623 NA non-coding downstream 324525 7459531 ~ 7459780 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding upstream 31459 7819746 ~ 7852251 (-)
G155684 NA non-coding upstream 46275 7834562 ~ 7836538 (-)
G155698 NA non-coding upstream 184816 7973103 ~ 7973325 (-)
G155737 NA non-coding upstream 388412 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 518992 8307279 ~ 8382607 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 505982 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 780782 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 802344 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 917005 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 961273 6766608 ~ 6823032 (-)
G155807 NA other upstream 757107 8545394 ~ 8551977 (-)
G155827 NA other upstream 837471 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1124775 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1133277 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1291245 9079532 ~ 9097302 (-)

Expression


Co-expression Network