LOC122328366 (LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530)


Basic Information

Item Value
gene id LOC122328366
gene name LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16541514 ~ 16545688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224027.1
ACATTTCATAACACGGAAGCcgaatgtgtttattttcaatttttgtgATATGTTGTCAGGCAAGCGATGATAATATTGTAATGTGAGTTATGCGGTTTTAGACACCAAATAACAATCCATAACAACTTGTGCAGTTTCAATAATACGAATTGTGAACTTTGAACTTTGACTATCATCACCATGGCAGAACTAAAAGCGTGTAAAGTGTGTAACGTTAACCGACACAGGTATCACGGCCTGGCTGTAACCTCTctgaatcagctcaaaataAAAGGTGGTGAGACTTTAGGGTTTCATCCCAGTGCATCTGTCTCAGTGGTTCTAGAAGATGATGGGACCATTGTAGAAGACGAGGCTTACTTTTTGTGTCTGCCAGCAAATACAAAATTCATGCTGCTGCATGCCAATGAAATATGGAAGCATTCTCATCAAGTTGATGGAGGGACAGCTCAGTCTTGGAGTAAGTCCACTGATGTGGAAGTAGATGGGAAAGACGAAGTTGATGGGTTTGAATCTTGGCGCAATTTGGCAGAGCAGCTAAGGCAGGACCTGGCCAGTATTATCCTCATGTCTGAGGCCGATCTACAGATTCTGATTGATGTGCCATGCTCCGATCTGGCTGCAGCGATGGACTTCTCACAGCAGAAAACCCGGGTCCTACAGGACACTCTGCAGAGAATGCTGGACCGCagggaagaagagagacagtCCAAAGACTTACTGAAGCTCTATTTGAAAGCCATGGAACAAGAAGGCACCTGGGACCCACAAGAACAAAGCGCTAGACTAGATGAGACAGATGGGGTGCAGGTGGAGGCCGCAGCAGGGTTCAGCCCCACAACTCTAATGGTCCTGAAGGACAAAAAATACCCAGAGACAAGACTGTCCAATGAAGAGCTACAGctGGTGGCGGGGCATGGAGCGGAGGTCATGATGGAGGTGTTGGGCTGGAACAGTGAAAGGACATCAGCACTGGTCCAGGCATGTGAAAGTGAGCTCCGTAAACGCCTACAGCGAGTTCAAGCCCTGCAGTCCCTCAGTGCTTTAAATCAGTCCACTTCACAAGcacacactgagagagacaCCCGAGCCAAGCGccgcaaaacacacacacactgacagaccttttctctttgtttttgtacCGCTTCATTACAATTCATTTAGACTGCGTTGTTTGgtgtttattttgataatagtatttgtgtatataaatgccaaagcataataaaaatcatattttaagcaAGGAAAACATACAGGCTAGTGCtaattttgatgaataaaattcCATGTTTCTTCTCTGTTGTCTACAATTCGATCGGTGAAAATTCAATACTACGCTCTTAAATATAAATCCTCTTTATTAGTATCagtggttccacaaagaacctttagtAACCTTTTCATTCcacaaaaaggttctttagattaataaaatgtttttcacactaagaaaaaaatgcttcttttaagaactgtttacTGAAAGGGCCTTTGAGGACCCAAacatggttcttctatggcattgctgtacaaaaaaaaaccttttggaAGCTCTATTTTTAAGAGTATATGTAATTTTCAAgttgaaagaaaaggaaaatggaaacatttcagagaaaaatgtatgtttcaAAAGGGAGGTAAATTGATTGTACCAAATACCTGTAATATATCCTGACAGATAGGACATTTTAATAACTATTACACGCATTTAATTCTgctttatgatatttatatagCAATGCGTTAACGTATTATTGCAAGGTTCACTAAACGTGTCAAATTGGAAATGTTAGCTATTTAGCCTGTGGggtgcttttttcattttttgaaatgCTAAATGATATCAAATATTGTTGTACTAATAAaagattttgacatttaa

Function

NR:

description
PREDICTED: DNA fragmentation factor subunit alpha-like

GO:

id name namespace
GO:1900118 negative regulation of execution phase of apoptosis biological_process
GO:0005811 lipid droplet cellular_component

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224027.1 True 1891 mRNA 0.40 6 16541514 16545688

Neighbor

gene id symbol gene type direction distance location
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding downstream 35711 16488226 ~ 16505803 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding downstream 139809 16399805 ~ 16401705 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding downstream 164706 16359689 ~ 16376808 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 196827 16341446 ~ 16344687 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding downstream 209842 16259075 ~ 16331672 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding upstream 63790 16609478 ~ 16616339 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 128549 16674237 ~ 16677367 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding upstream 134618 16680306 ~ 16681688 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding upstream 286397 16832085 ~ 17007286 (-)
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding upstream 625425 17171113 ~ 17176489 (-)
G158417 masp2,LOC107571531,LOC107708846 non-coding downstream 10418 16530052 ~ 16531096 (-)
G158404 NA non-coding downstream 40664 16498369 ~ 16500850 (-)
G158388 NA non-coding downstream 97477 16443806 ~ 16444037 (-)
G158353 NA non-coding downstream 102234 16416925 ~ 16439280 (-)
G158383 NA non-coding downstream 107885 16432961 ~ 16433629 (-)
G158432 NA non-coding upstream 7355 16553043 ~ 16553395 (-)
G158462 NA non-coding upstream 61773 16607461 ~ 16607960 (-)
G158481 NA non-coding upstream 178243 16723931 ~ 16724403 (-)
G158483 NA non-coding upstream 181750 16727438 ~ 16727715 (-)
G158484 NA non-coding upstream 182413 16728101 ~ 16728343 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 182809 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 298119 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 371680 16143833 ~ 16169834 (-)
G158231 NA other downstream 532599 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 824264 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 630937 17176625 ~ 17184385 (-)
G158609 NA other upstream 793579 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 868015 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1500238 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1685955 18231643 ~ 18235536 (-)

Expression


Co-expression Network