ndrg3b (ndrg3b,ndrg3,LOC107724194,LOC107696989,LOC107705728,LOC107693556)


Basic Information

Item Value
gene id ndrg3b
gene name ndrg3b,ndrg3,LOC107724194,LOC107696989,LOC107705728,LOC107693556
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5114627 ~ 5153535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224040.1
CTCTCGTGAGCTCCTCCTCCGTGAGCGCGAGGAAGAGACTCCagccactctctctctctctctcgagctCTCCAGTGACTGCAACACGCCGTGCAAGTCTCTCCGACTCCGCTCAGCTCCTGTCCAGACCGGCGCGTTTTGATATTCTTGAACGtgaCGGGCAGCTGTCAGGTTTGAGGATGGATGAGTTACAGGATGTGCAGTTGACTGAGATCAAACCTCTCTTGACAGACAAGAATGGACAGAACTTCCAGGACTTTGATTGTCAGGAGCATGACATCGAGACTCCCCATGGTGTCCTCCATGTGACTTTGAGAGGAACTCCTAAAGGCAACAGACCGGTCATTCTCACCTATCATGACATTGGACTCAATCATAAGTCATGTTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACCCAGCACTTTGCTGTGGTCCATGTTGACGCTCCAGGCCAGCAAGAATCTGCCCCTCCTTTCCCCACCGGGTACCAGTACCCAACCATGGATGAGCTTGCTGAGATGCTGCCCTCAGTTATGACCCAGCTAAAGATCAACAGTGTTATTGGTATCGGTGTGGGTGCAGGAGCTTATATCCTTACTAGACTGGCTCTGAATGAGCCAGCTTTGGTGGAGGGGTTGGTTCTCATCAATGTGGACCCCTGTGCTAAGGGCTGGATTGACTGGGCTGCCTCTAAGTTATCTGGATGGACCAGCAATCTAATAGACATTGTGATGGCACACCATTTCAGCACGGACGAGCTGACGGAGAACCAGGAGATCATTCAAACGTATCGTCTGCACATCGCTCAGGACATCAATCAGGACAACCTGGCTCTCTTCTGCCAGTCCTACAACAGTCGGCGAGATCTGGAGATTGAGAGGCCTGTCTTGGGACTTAATGAAAATACGGTCAAAACGCTTAAGTGTCCTGCCTTGCTAATTGTTGGTGACACATCACCAGCGGTAGAGGCTGTGGTTGAATGCAACTCAAGGCTAAATCCAACCAAGACTACTTTACTCAAGATGGCAGATTGTGGTGGACTTCCCCAGGTTGTCCAGccGGGTAAACTCGCTGAGGCTTTCAAGTACTTTGTCCAGGGAATGGGCTACATCCCTCATGTGCTACTCAGCCACCTGAACAGCGAATCAGtGCCCACTGCCAGTATGACCCGATTGGCTCGATCTCGCACTCACTCTGCCTCCAGCATGGGCTCAGCGGATGGCTCTCGCAGCCGAGCTCATACCAGTTCACAGATGGAGGGCGCCACCGCCGGCCCTGTCCACGACAACCAGAACAGACCGCAAACCATGGAGGTGTCCTGCTAAAACACCACTTGACCTGGGATCATCCGCTTGTTGAACCTCTGCACCTCAGGCGGCTCTCTGTCCActttggggttttgtttccaCTCCGTCTTTGTCTTTCGTTCTGTTTGTTCTCTTGTGGCCAGGGAGCGCTGGTCTAA
>XM_043224043.1
TCTCGTGAGCTCCTCCTCCGTGAGCGCGAGGAAGAGACTCCagccactctctctctctctctcgagctCTCCAGTGACTGCAACACGCCGTGCAAGTCTCTCCGACTCCGCTCAGCTCCTGTCCAGACCGGCGCGTTTTGATATTCTTGAACGtgaCGGGCAGCTGTCAGGTTTGAGGATGGATGAGTTACAGGATGTGCAGTTGACTGAGATCAAACCTCTCTTGACAGACAAGAATGGACAGAACTTCCAGGACTTTGATTGTCAGGAGCATGACATCGAGACTCCCCATGGTGTCCTCCATGTGACTTTGAGAGGAACTCCTAAAGGCAACAGACCGGTCATTCTCACCTATCATGACATTGGACTCAATCATAAGTCATGTTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACCCAGCACTTTGCTGTGGTCCATGTTGACGCTCCAGGCCAGCAAGAATCTGCCCCTCCTTTCCCCACCGGGTACCAGTACCCAACCATGGATGAGCTTGCTGAGATGCTGCCCTCAGTTATGACCCAGCTAAAGATCAACAGTGTTATTGGTATCGGTGTGGGTGCAGGAGCTTATATCCTTACTAGACTGGCTCTGAATGAGCCAGCTTTGGTGGAGGGGTTGGTTCTCATCAATGTGGACCCCTGTGCTAAGGGCTGGATTGACTGGGCTGCCTCTAAGTTATCTGGATGGACCAGCAATCTAATAGACATTGTGATGGCACACCATTTCAGCACGGACGAGCTGACGGAGAACCAGGAGATCATTCAAACGTATCGTCTGCACATCGCTCAGGACATCAATCAGGACAACCTGGCTCTCTTCTGCCAGTCCTACAACAGTCGGCGAGATCTGGAGATTGAGAGGCCTGTCTTGGGACTTAATGAAAATACGGTCAAAACGCTTAAGTGTCCTGCCTTGCTAATTGTTGGTGACACATCACCAGCGGTAGAGGCTGTGGTTGAATGCAACTCAAGGCTAAATCCAACCAAGACTACTTTACTCAAGATGGCAGATTGTGGTGGACTTCCCCAGGTTGTCCAGccGGGTAAACTCGCTGAGGCTTTCAAGTACTTTGTCCAGGGAATGGGCTACAtGCCCACTGCCAGTATGACCCGATTGGCTCGATCTCGCACTCACTCTGCCTCCAGCATGGGCTCAGCGGATGGCTCTCGCAGCCGAGCTCATACCAGTTCACAGATGGAGGGCGCCACCGCCGGCCCTGTCCACGACAACCAGAACAGACCGCAAACCATGGAGGTGTCCTGCTAAAACACCACTTGACCTGGGATCATCCGCTTGTTGAACCTCTGCACCTCAGGCGGCTCTCTGTCCActttggggttttgtttccaCTCCGTCTTTGTCTTTCGTTCTGTTTGTTCTCTTGTGGCCAGGGAGCGCTGGTCTAA
>XM_043224044.1
AGCTTCTATTGAGAGGGGtaaagctttttatttgttattggtGGGCGTTCAAAGCGGTCGGTCTTGTTATACGCGGCTGTCCCCTCCCTTACCTCCTGCCACCGCCCCTCTCTCTGAGGAGAGTGAGAAGAGGGAACGGGAGAAAGCGTCTGTTCTGTGATTGCTGGATGAAACATGACGGCAGTGCTGGACATCAACCAGGTTTCCTGTGCGCTGAGCGCTGTGGAGCATGACATCGAGACTCCCCATGGTGTCCTCCATGTGACTTTGAGAGGAACTCCTAAAGGCAACAGACCGGTCATTCTCACCTATCATGACATTGGACTCAATCATAAGTCATGTTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACCCAGCACTTTGCTGTGGTCCATGTTGACGCTCCAGGCCAGCAAGAATCTGCCCCTCCTTTCCCCACCGGGTACCAGTACCCAACCATGGATGAGCTTGCTGAGATGCTGCCCTCAGTTATGACCCAGCTAAAGATCAACAGTGTTATTGGTATCGGTGTGGGTGCAGGAGCTTATATCCTTACTAGACTGGCTCTGAATGAGCCAGCTTTGGTGGAGGGGTTGGTTCTCATCAATGTGGACCCCTGTGCTAAGGGCTGGATTGACTGGGCTGCCTCTAAGTTATCTGGATGGACCAGCAATCTAATAGACATTGTGATGGCACACCATTTCAGCACGGACGAGCTGACGGAGAACCAGGAGATCATTCAAACGTATCGTCTGCACATCGCTCAGGACATCAATCAGGACAACCTGGCTCTCTTCTGCCAGTCCTACAACAGTCGGCGAGATCTGGAGATTGAGAGGCCTGTCTTGGGACTTAATGAAAATACGGTCAAAACGCTTAAGTGTCCTGCCTTGCTAATTGTTGGTGACACATCACCAGCGGTAGAGGCTGTGGTTGAATGCAACTCAAGGCTAAATCCAACCAAGACTACTTTACTCAAGATGGCAGATTGTGGTGGACTTCCCCAGGTTGTCCAGccGGGTAAACTCGCTGAGGCTTTCAAGTACTTTGTCCAGGGAATGGGCTACATCCCTCATGTGCTACTCAGCCACCTGAACAGCGAATCAGtGCCCACTGCCAGTATGACCCGATTGGCTCGATCTCGCACTCACTCTGCCTCCAGCATGGGCTCAGCGGATGGCTCTCGCAGCCGAGCTCATACCAGTTCACAGATGGAGGGCGCCACCGCCGGCCCTGTCCACGACAACCAGAACAGACCGCAAACCATGGAGGTGTCCTGCTAAAACACCACTTGACCTGGGATCATCCGCTTGTTGAACCTCTGCACCTCAGGCGGCTCTCTGTCCActttggggttttgtttccaCTCCGTCTTTGTCTTTCGTTCTGTTTGTTCTCTTGTGGCCAGGGAGCGCTGGTCTAA

Function

symbol description
ndrg3b Is expressed in immature eye; nervous system; otic vesicle; and thymus. Orthologous to human NDRG3 (NDRG family member 3).
ndrg3 Predicted to be involved in signal transduction. Located in cytoplasm.

NR:

description
protein NDRG3-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224040.1 True 1477 mRNA 0.52 17 5114627 5153535
XM_043224043.1 False 1437 mRNA 0.52 16 5114627 5153534
XM_043224044.1 False 1433 mRNA 0.52 15 5114627 5131262

Neighbor

gene id symbol gene type direction distance location
sla2b LOC107705729,LOC107696991,LOC107594020,LOC107724197,LOC107693557 coding downstream 3703 5093833 ~ 5110924 (-)
gss gss coding downstream 31632 5076353 ~ 5082995 (-)
nkain4 nkain4,LOC107693550,LOC107696930,LOC107601334,LOC107705734,LOC107594068 coding downstream 137505 4928029 ~ 4977122 (-)
ddx23 ddx23,LOC107705733 coding downstream 193745 4914490 ~ 4920882 (-)
adcy6a adcy6a,adcy6,LOC107705664 coding downstream 237599 4835981 ~ 4877028 (-)
phf20b phf20b,LOC107696986,LOC107724192,LOC107705726,LOC107594424,LOC107575030,LOC107693555 coding upstream 426 5153961 ~ 5169328 (-)
arhgap46b si:ch211-218g4.2,LOC107724193,LOC107696985,LOC107705724,LOC107693558,LOC107575029 coding upstream 17430 5170965 ~ 5232768 (-)
sulf2b sulf2b,LOC107724188,LOC107693554,LOC107551524,LOC107705722,LOC108429304 coding upstream 80162 5233697 ~ 5354895 (-)
eef1a2 eef1a2,LOC107724190,LOC107705720,LOC107551525,LOC107696983,LOC107693560,LOC108429306,LOC108276238 coding upstream 283983 5437518 ~ 5443533 (-)
LOC122329294 mrgbp,LOC107724191,LOC107705719,LOC107696984,LOC107693561 coding upstream 291232 5444767 ~ 5449598 (-)
G155157 NA non-coding downstream 1663 5111844 ~ 5112964 (-)
G155156 NA non-coding downstream 17497 5096532 ~ 5097130 (-)
G155153 NA non-coding downstream 25530 5085142 ~ 5089097 (-)
G155112 cacnb3a,LOC107705735,LOC107696997,LOC107724200,LOC107601341 non-coding downstream 171610 4908918 ~ 4943017 (-)
G155096 NA non-coding downstream 383487 4727854 ~ 4731140 (-)
LOC122329300 NA non-coding upstream 277011 5430546 ~ 5431524 (-)
G155238 NA non-coding upstream 371506 5525041 ~ 5547708 (-)
LOC122329299 NA non-coding upstream 500483 5654018 ~ 5662956 (-)
G155254 NA non-coding upstream 661776 5815311 ~ 5919163 (-)
G155308 NA non-coding upstream 1037562 6191097 ~ 6191320 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 280107 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 919629 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 1208735 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 1596485 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 1668663 3434124 ~ 3445964 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 300882 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 324306 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 330677 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 1577316 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 1613073 6766608 ~ 6823032 (-)

Expression


Co-expression Network