XLOC_006821 (si:dkeyp-77c8.3)


Basic Information

Item Value
gene id XLOC_006821
gene name si:dkeyp-77c8.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37199298 ~ 37200120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013123
CTAAACTCCACAGACATGGCCAAGCAACTAGAGGAGGCAGAGGAATGTAGAAAGTCTGCCCAGATACACGTATCTATAATGTCTAGTCAAGACCAGGTTAACGGAGTCATCAGTGCTGGCACTAATGGCACAGTTCATGACCCTGAGGGCATGCAACAACTAAGCGCCCAGTGGAGTGCAGCTTTGTGGGATGCAGCAAGCTCTGTCCACTCTAAGGAAGCTCAACTACAGATTGTTGCAGATTTTGACAGACAGACCCAGAAAGTCAAAGCTACTCTTGAAAGACTCCGATCTGAACGTGAGGGACTAAAAACATCTCCAGCTGTGAGCAGCTTTGCTGAGGAGGAGAGGTTACACACTTTCTTGAGAAGTATGGAACAGGAAAGGACAGTTCTTGGTGACCTAATCCAGACTCATGCTAAACTGTCCCCCCACCTCAGTCTTCCTGAGAAACAGGCCGCAGAAATACAACAAAACAGCTTGCAAAACCAGTGGAGGGCGCTGGAAAAGGATGCAGAGATTGCTCTTTATATGGTTA

Function

symbol description
si:dkeyp-77c8.3 Predicted to enable actin filament binding activity. Predicted to be involved in nuclear migration. Predicted to be located in nuclear envelope. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in cytoplasm and nuclear outer membrane.

GO:

id name namespace
GO:0007097 nuclear migration biological_process
GO:0051647 nucleus localization biological_process
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-399 Predicted to enable actin filament binding activity. Predicted to be involved in nuclear migration. Predicted to be located in nuclear envelope. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in cytoplasm and nuclear outer membrane.

Ensembl:

ensembl_id ENSDARG00000092369

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013123 True 538 mRNA 0.48 3 37199298 37200120

Neighbor

gene id symbol gene type direction distance location
XLOC_006820 si:dkeyp-77c8.2 coding downstream 9738 37186303 ~ 37189560 (-)
XLOC_006818 si:dkeyp-77c8.1 coding downstream 18483 37171976 ~ 37180815 (-)
XLOC_006819 AL845493.1 coding downstream 20582 37178602 ~ 37178716 (-)
XLOC_006816 syne2b coding downstream 71328 37075322 ~ 37127970 (-)
XLOC_006817 NA coding downstream 88762 37110212 ~ 37110536 (-)
XLOC_006822 si:dkeyp-77c8.4 coding upstream 8340 37208460 ~ 37210369 (-)
XLOC_006823 si:dkeyp-77c8.5 coding upstream 26930 37227050 ~ 37229245 (-)
XLOC_006824 syne2b coding upstream 48878 37248998 ~ 37254777 (-)
XLOC_006825 kcnh5b coding upstream 102455 37302575 ~ 37383625 (-)
XLOC_006826 ppp2r5eb coding upstream 221213 37421333 ~ 37465542 (-)
XLOC_006471 BX537274.2 misc downstream 26934393 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36373073 825904 ~ 826225 (-)
XLOC_006815 NA non-coding downstream 187062 37009812 ~ 37012236 (-)
XLOC_006814 NA non-coding downstream 201538 36995633 ~ 36997760 (-)
XLOC_006804 BX927407.1 non-coding downstream 587139 36587770 ~ 36612159 (-)
XLOC_006829 NA non-coding upstream 328041 37528161 ~ 37535785 (-)
XLOC_006836 NA non-coding upstream 432506 37632626 ~ 37636598 (-)
XLOC_006842 NA non-coding upstream 990401 38190521 ~ 38195214 (-)
XLOC_006843 NA non-coding upstream 1413105 38613225 ~ 38619719 (-)
XLOC_006846 BX323574.1 non-coding upstream 1653017 38853137 ~ 38853252 (-)

Expression


Co-expression Network