foxl2l (zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823)


Basic Information

Item Value
gene id foxl2l
gene name zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9120872 ~ 9122731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224054.1
tttttatatttaacctaatattttaaattcaattgcGCGTTCGATTCACAgcaagtttttatattttatcaacAACGCAATATTTAATTCACAACGTGAATAAAAAGAATACAAGGAGgacatattataattattttaccaaCTTTGGCTCAGCGCAATCAGCAAGCGTTTTTAATAGCGGCGACATCAAACACGTTTACTATAACATTTACCAAGCAGTCAAAATACGTCTGCGACGCCTCGCGCGCCTCTTTCATGTCGAATTCGCGAACTTTTGACCTCTACCTGAGGATACCGACAGGAGGCAGGGCAGGTAGGTGGAGACCTAAAGCAAATCCGACGCACACCTGGACACTTTTAACTTTGCACTCGTGCTTGTACAATCTCGCCTTTTCATTCATCCAGCTCAAGCCCATCTCATGGATCGCAGCGCGGGGACTGATAACCCGCAATCCCGCGATACCGCAGCGGACGGCCGGGGTGCCGCGGATGGAGGAGCCGCTCCAGCGCCAGAAAAGCCTCCTTATTCGTACGTGGCTCTCATTGCAATGGCCATCAGAGAGAGCGAGGAGAAGAAGCTGACCCTGAATGACATCTACAGCTTCATCATATCCAAGTTTCCGTACTACGAGAAGAACAAAAAAGGGTGGCAGAACAGCATCAGGCACAATCTGAGCCTCAACGAGTGCTTCGTGAAGATTCCCCGGGAGAGCGGCGGGGAACGGAAGGGGAACTTCTGGACGCTAGACCCAGCGTTTAGCGATATGTTTGAGAAGGGTAATTACAGGCGCAGGAGGCGCGTTAAGAGACCCTACCGACCGCCACCCTTACCGTCTGGATTTAACTTCGCCGACTCGTACTGCCTGCAACAGGAGCCCGTTTATTGGCAAAGCCCGTTCGTCAACACCGGCTCCTGGAGTCACCAGTCCAGCTCTCCGACGCACATCTCCGGTTACCTGCAGCCCATGCTTGGTAACGCGCGCCCTCTGTCTCCAAACGATTATGCCAACTCTCCCGTGAGTTATTACCACGGTCAACACCATCACCTTCACCCGTCCTACAGACCGTACCACCGGCATCCGAACGCTCTGGTGCCTCTAAGCGGCATGACTCCTCCGGTGAGCCCCGGCGGAAGCGCCATCTCCGCCTGCAGCTACCCGCCGCACACCGGCCATCCCGAACCGGGGCACCATCCGTACGACTGACGGACAGACACGTGAAAACTGAATAGAAGTAGGCTAAAAATTTCATTCGGATCTAGATACGCCGTTCTTGTTTCGTTAACCTTTGGAAATGTTAAGCGTGCCGTTTCAAGTCAGACCGGCTGCTTGAAATTAGGTCGAAATGTTGCATTCACTGCATCGGTTTGTTCACTGTGACTAATGGCTTTACAGTCGTGTTCTGTGGATGTTCACGAATGAAACATTGTTACACTGTTAAACTAGCCCGAATGTTCACTTAAAAAGTCAAGAGACGAAGAGATGTTCAAACGCACTTGATTGTTGGCAGGTTGTCAGTGTCCAAACTTTCCATAAATTTCAGCTAATGTTTAGAAAGCGCCAAGATAGGGTACatgagcatatttatttttttgccgtGCATTGGGATTGAAATAAGGATCTTAAAGTGGATGTGCGGTTTGCAAAccgtttaaaaatgttttgatatatttcattTGGTAGAAACTCTTTGCACAAGTTGATACAACAGTTCTCTAAGTGTATTttgttaaaacaatgttttgtataTTGAATGGACATGTTCAGTGTCTGCATTTCTGGAGTctgacaatatttttatatgtaaatgtttataaCCTGTtcgattttttttctcataaaattCTGATAACTAGTCTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001541 ovarian follicle development biological_process
GO:0019101 female somatic sex determination biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0043028 cysteine-type endopeptidase regulator activity involved in apoptotic process molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0030331 estrogen receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224054.1 True 1860 mRNA 0.47 1 9120872 9122731

Neighbor

gene id symbol gene type direction distance location
pik3cd pik3cd,LOC107708832,LOC107718809,LOC107681979,LOC107695767 coding downstream 2800 9099273 ~ 9118072 (-)
clstn1 clstn1,LOC107718806,LOC107681971 coding downstream 57971 9029720 ~ 9062901 (-)
nmnat1 nmnat1 coding downstream 94442 9023008 ~ 9026430 (-)
LOC122328502 rbp7a,nmnat1-rbp7a,LOC107708837,LOC107681992,LOC107695774,LOC107586559,LOC107580544 coding downstream 99791 9019526 ~ 9021081 (-)
ube4b ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775 coding downstream 101890 8999326 ~ 9018982 (-)
tmem201 tmem201,LOC107681977,LOC107695766,LOC107718817 coding upstream 1269 9124000 ~ 9135259 (-)
slc25a33 slc25a33,LOC107708828,LOC107695765,LOC107681985 coding upstream 12684 9135415 ~ 9142320 (-)
camta1a camta1a,LOC107708820,LOC107570946,LOC107656552 coding upstream 93054 9215785 ~ 9516716 (-)
thap3 LOC107656551,LOC107708819,LOC107570956 coding upstream 403861 9526592 ~ 9528135 (-)
pcmtd2a pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 420755 9543486 ~ 9548342 (-)
LOC122329247 NA non-coding downstream 47928 9070384 ~ 9072944 (-)
G155933 NA non-coding downstream 491769 8628699 ~ 8629103 (-)
G155825 NA non-coding downstream 495230 8624926 ~ 8625642 (-)
G155803 NA non-coding downstream 587945 8526402 ~ 8532927 (-)
G155759 NA non-coding downstream 738265 8307279 ~ 8382607 (-)
G155968 NA non-coding upstream 30349 9153080 ~ 9153502 (-)
G155979 NA non-coding upstream 65782 9188513 ~ 9188897 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding upstream 479231 9601962 ~ 9602477 (-)
G156054 NA non-coding upstream 484757 9607488 ~ 9607948 (-)
G156056 NA non-coding upstream 489519 9612250 ~ 9612596 (-)
ctnnbip1 ctnnbip1 other downstream 23570 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 194121 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 201102 8913062 ~ 8919770 (-)
G155827 NA other downstream 492481 8625758 ~ 8628391 (-)
G155807 NA other downstream 568895 8545394 ~ 8551977 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other upstream 72579 9195310 ~ 9209964 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 679054 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 709078 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 1095742 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 1233210 10355941 ~ 10359786 (-)

Expression


Co-expression Network