cntn3a.1 (cntn3a.1,LOC107696975,LOC107663068,LOC107705712,LOC107551535,LOC108438208,LOC105900126)


Basic Information

Item Value
gene id cntn3a.1
gene name cntn3a.1,LOC107696975,LOC107663068,LOC107705712,LOC107551535,LOC108438208,LOC105900126
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6028904 ~ 6084299 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224063.1
TGAAGTTTGCGTTGCGTCACAGCGGGGATGTGAGCGCGAGCGGCTCCACACTCTTTGACGCGTGGCGCAGTGTGGAGAGCTTCCGCGCATTCACCTCCGTCTGCGAGGCTGAACTGAGGATACTCCACGCGTAACGCGTTTGCTTTACTTCTCGCTCGCCGCGCAGCAACTCAGCCGGGTGCCGTCGGCGCGTCTTAGCGTTTCTTGAGGAGTATCTTGGATTTCCGGAGGCAGAAAATAGCAGAGAGAATTCCTCTGTGGCAGTTGCGCGTGTGAAGAGCGCTCGTCTCGTCTCTGGCGTTGTGGAATGGCTGGAGAGATGCTGCTGTTCCAGTGGCAGGCGCGGAGAGGCTGAAAACTGCGGGAAGTCAAACAGGGCACAGAGGATCAAGTCTGGACAAAGACGGCATTCTATTTACCCTCAATTGAATGTGAGCTCTCGCTGACCTCCAATATTTAAAATGGGGTTGTCATGGAAACTGCTGGTGCTGCAATTATTCATGGGATGCCTTTCAGAAGGCAGCGGTCCTCTGAGGCCAGTATTCACCAAACAGCCGGGAAGTATTGTATTCCCTCTCCATCTTAATGAGCCCAGCCGGGAGGTCACCTTCAGCTGCGAAGCCCAGGGACATCCGCCCCCGTCCTACAGGTGGAAAATGAACGACAGCTTCATTTCCCCTCAGCCTGGCTCTCGATACAGCATCTCAGGAGGAAACCTTCGAATCAGCCAGCTCAATAAGGAAGAGGATGCTGGTATTTACCAGTGTCTGGCCTCCAACTCATTCGGGACCATTCTCAGCAGAGAAGCTAGTCTTCACATTGCTTatctGGAGGAGTTTAAAACCCAGAGGAGAAGTCCAGTGAGCGTCAGAGAGGGGCAAGGTGTGGTTCTTCTCTGTGGCCCTCCAGCACATATGGGAGAGTTGACCTTTTCCTGGATCTTCAACGAATATCCCTCATTCGTGAAGCAAGACACGCGGCGCTTTGTGTCACAGAAAACAGGCAACCTGTACATCGCTAAAGTGGAGCCCTCAGACGTGGGAAACTACACCTGTGTGGTGACTAACACTGTGACCCAGAGCAGAGTGCAGGGACCTCCTACATCGCTCGTACTCCGCAGCGATGGCATTATGGGAGAATATGAGCCCAAAATTGAGGTCCAGTTTCCAGAGGTTTTGGCCGTTGCCAAAGGGTTGACGGTCAAACTGGAGTGCTTCGCTTTGGGAAATCCAGTACCTGCGATCACCTGGAGAAGACCAGACGGAGTTCTTTTTCCCAGAAAAGTAGATTTTGGCAAATCCAGCGGTGTGTTGGAGATCCCGTATTTCCAACAGGAAGATGCAGGACCATATGAATGCACGGCTGAGAACTCCAGAGGCAAAAACACAGTCAAGGGGAGACTGTCCTTCTACGCACCCCCCCATCTGCTGGAGAAGCCTCAGGATGTGCAGAAAGCCATTGATGAATCTCTGCTGTGGGAGTGTAAGGCGAGCGCCAAGCCCAAACCGTCCTACAGGTGGCTGAAGAACGGAGAGCCGCTCGAAGCCTTTGAGGACAGAATCCAGGTGGTGAACGGGGCATTATCCATCAGCGGTCTAACCCTGTCAGATACTGGGATATACCAGTGTATCGCTGAGAACCGCCATGGCCGAGTGTTTGCCAACTCTGAACTCAAAGTCATTGCAGTGGCACCAGATTTCTCCAATAGTGTGCTAAAGGCCCAGACACTGGCTCGGCAGGGTGGAGATGTTCTGATTGAGTGCAGGCCCCGCATGTCTCCGCGCGGGATGATCTCCTGGAGGAAGGGCAAAGAGGCCCTGCGAGAGAGCCACAGAGTCTCCGTGCTGGATAACGGCAGTCTCCGGATATCTAACATCACCAAACTAGACGCGGGTCTTTACACTTGTGTGGCGAGAAACCAGTTTGGAGTGGCAAGCAGTGCAGGCACACTAGTGGTGAAAGAGCCGACTATCATCACTTCTAAAGCCACCCAGCTGGATGTTACAGTGGGAGAGAGTGTGGTTATTCCATGCCAGGTGTCTCGTGACCCTTCCCTGGATGTGAGATTCACCTGGTTTTTCAATGAACAGCTGATCAATTTTGGAAGCCatggaggatattttgaaaaagttggTGGGACATCTGCTGGTGACATCATGATTCGTAACATTCAGCTAAGGCACGCAGGAAGGTACACATGTGCCGTACAGACTAAAGTGGACAGTGCGTCTATAGCGACAGACGTTGTGGTACGAGGCCCCCCTGACCCACCACTGGATATTAAAGTTGACGAAGTGACAGAGACAACATCTTTTGTGTCGTGGAGTCCAGGCCCTGATAACCACAGTCCTGTCTTTGCTTACAACATTCAGATACGAAGCCCTTTCTCTCTTGGATGGCAGGCCGCCAAAACAGTGCCAGAGTCTCTGGGAGGGAAGCAGCTGACAGCCCGTGTGGTGGAGTTGAGTCCATGGGTTGAATATGAGTTCAGAGTTTTGGCCACCAACTCCATAGGCACTGGGGAACCCAGCAAACCCTCACAAAAAATCAGGACCAAggacacatTGCCAAGGACGACTCCAGCCAGAGTCAGTGGAGGAGGTGGCAGTCGCTCAGAGCTTGTCATCACTTGGGAGCCGGTCCCAGAAGAGTTGCAGTCTGGTCCAGGGTTTGGCTACGTGGTTGCTTTTCGCCCTCTTGGTGGTCAAAGCTGGATGCAGGCGGCCGTGACGTCTCCTGACGCGTCACGATATATCTTCAAAAATGAGAGCATCCCTCCATTCTCTCCATTTCATGTGAAAGTAGGAGTTTACAACAACAAAGGAGAAGGTCCTTTTGGACCTGTGACCACTATATACTCAGCAGAAGAGGAGCCGAGTCGTGCCCCCAGTCGCGTCCGTGCCAAGAGCCTGTCAGCCTCAGAAGTAGAGATCAGCTGGAAGCCTTTACCATGGAGCACCAGTAGGACACGCATAATGGGCTATGAGCTGAGGTACTGGAGTACAAAGGACAGGCCGGACACAGCCAGTGTGATGAGGACTGTGGGAAACAGGACATCTGCTGTCATTCGTGGACTGGACCCCAGCAGTACATACTACATTAAACTCAAAGCCTATAACAGTGCTGGTGTTGGACCCGATAGCACTGTGGTGAATGTCACCACAAAGAGACCACCACCGAGTCAATCTCCAGTGAAAGTTACGTGGAATACTACAGACTCTAAACTCATCCTCAAGTGGGATCACGTCAAGTCTCTGGAGAATGAGTCTGAAGTTATGGGCTATAAGGTCATGTACAAGCAAAGCAGACAGAGCCGGCCCAGCGTGGTGGAGACTAACAGCACATCTCTTGAGCTCTCCCTGCCTGTGGACGAAGATTACATCATCCAGATCAAACCAGTCAGCGAAGGTGGAGAAGGGAGCAGCAGCAAACAGATTACCATCCCCAGGATAGCAGttgCACATGCGATTGGATTTTCCCCAGAGAGGAAAGCACTTCCAGTCCTCATAACACTATCACTCTACTGTACGGTCAGGACTTTCTTATGACAGACGAACTGAACAATACAAACATCTACAAGTGGATCCACTTGTCTTTTTCCAGTATGTTTTACAAACGGGACTCTTCAGAGGGAAAGTTTTCCTCTCACTTTTTAAAAGAGGATGTTTGCTAATCTGGTTTTGCTCACTGACACCAAAGTTGTCGAGACAGTGGAGTAGAAGCTATCGCGTTTTTGGGGATAAACGTATCAACGGACTTCACCCAAGTGGTTTCCAACTAGGAACTGGATATTAAAGGgcataaaatgacataaagTGTGCTCTTAAGGACATACAAGAACGTCATTTTGGATCAGACAAATCCATATCCATCCATTACACTGTTGGCAGTGGAGAGCCACACAAAATGCCTTTTCCGCAAGAAGCTTGGGAATACTTAATGAACTCCTTTGAAGAGAATTCCTACTGCCATACCTCACAGACACTTTCATTGTAAGACCATCAACCATTTAATCAGCTGTCCTCAAATCAGGCAGAGTTTACAGTCCCCCGGTGTTGACATGCCCCCCCCTGTCTGTTTGAAAGACGAAGCTAATGCTGCTGGCCTTATACTTATACAGTAAAAGAGCTCTCTGGCTGTCTCGAGCTGGTTGTTCCTTCAGTCATGCACTGAGATCTTTGTTTTGCTAGTGTGTGTGCCTCTTTAATGAGAAACAGTATGTAAAAATATCCTCAGGACCAGAACAGCCTTAAATAGTTGTCTTGATTTCCTTTCTGGTTTAGTTTGTTCATTTACAATTCCATTATTTGATGATGTACAACAGATATTTTGATTGTAAAAGACCAGCGTTTCATTTTCCGTTACGGTGCTTTCTATAGGTGATGGCTGTGATCATTAAATACATTGGACATTATGCTTATGTTCCATTTTCAAGCTGTTTAGCATGAACTGGCTCTGTAGTGGCTTGAAATACAGTATTTGAATGGACTGTctgcttttaataaatgaaggAACACAAGTAATGTTCTTAAGATA

Function

symbol description
cntn3a.1 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be active in axon and plasma membrane. Orthologous to several human genes including CNTN4 (contactin 4).

NR:

description
contactin-4-like isoform X3

GO: NA

KEGG:

id description
K06761 CNTN3; contactin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224063.1 True 4536 mRNA 0.49 23 6028904 6084299

Neighbor

gene id symbol gene type direction distance location
edn3b LOC107551532,LOC107696951,LOC107705677,LOC107663060 coding downstream 62479 5957165 ~ 5966425 (-)
ttll9 ttll9 coding downstream 78951 5944681 ~ 5949953 (-)
ppp1r3da ppp1r3da,LOC107722761,LOC107696952,LOC107593910,LOC107551518,LOC107663071 coding downstream 89101 5937632 ~ 5939803 (-)
sycp2 LOC107696925 coding downstream 92841 5919773 ~ 5936063 (-)
pigt LOC107724198,LOC107551531,LOC107696980,LOC107705717,LOC107593938,LOC107663065 coding downstream 135181 5886612 ~ 5893723 (-)
chl1a chl1a,LOC107663069,LOC107569852,LOC107705711,LOC107681408 coding upstream 52262 6136561 ~ 6183159 (-)
ppp4r2a ppp4r2a,LOC107727015,LOC107681379,LOC107568049,LOC107705710,LOC107666205 coding upstream 231603 6315902 ~ 6322111 (-)
tns2a tns2,LOC107681375,LOC107727022 coding upstream 285917 6370216 ~ 6414435 (-)
eif4ba LOC107666323 coding upstream 337913 6422212 ~ 6434975 (-)
krt18a.2 LOC107666613,LOC107568043,LOC107705676 coding upstream 366660 6450959 ~ 6453339 (-)
G155254 NA non-coding downstream 109741 5815311 ~ 5919163 (-)
LOC122329299 NA non-coding downstream 365948 5654018 ~ 5662956 (-)
G155238 NA non-coding downstream 481196 5525041 ~ 5547708 (-)
LOC122329300 NA non-coding downstream 597380 5430546 ~ 5431524 (-)
G155157 NA non-coding downstream 915940 5111844 ~ 5112964 (-)
G155308 NA non-coding upstream 106798 6191097 ~ 6191320 (-)
G155388 NA non-coding upstream 264708 6349007 ~ 6351825 (-)
G155413 NA non-coding upstream 400355 6484654 ~ 6484915 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding upstream 401140 6485439 ~ 6499749 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding upstream 425416 6509715 ~ 6514093 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 532430 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 549082 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 573857 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1194384 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 1833906 4173914 ~ 4194998 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 646552 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 682309 6766608 ~ 6823032 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 773708 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 880443 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 909868 6994167 ~ 7003523 (-)

Expression


Co-expression Network