sephs3 (sps2,LOC107560911,LOC108275954)


Basic Information

Item Value
gene id sephs3
gene name sps2,LOC107560911,LOC108275954
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11305279 ~ 11310902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224072.1
ATGACCGAGCGTGCACATAAAACACGCTCTCTTGATTCAGTCAGCCATTTATCCCGTCAAACGACTCACCCTGTTCTTTCATTTACCCGTGGCTCACCGCCTGAATGAGGAGTAAATAAATTCACCCTGGCCATGTCAGTGTCTGAGCCAGCGTCGGTGGACTGTGGCGGAGCGGGAGGGTACGGAGCCTTTTACCCGGCTGGATACCAGGCGTTGAACCCGGAGGAGCACGGCCTAGACCGCGGCTTCCGACTCACGGCCTTCTCCGATATGAAGGGATGAGGGTGTAAAGTCCCGCAGGAGACTCTGCTCAAACTCCTGCAGGGACTAGAGCCGGACCGGCCGCCCGGAGAGGACGGCGGCTCGGGGGCGGGTGTCGGAGACGAGACCGCTGAGTTCGGACTTGTTTCAGTAGCTCAGGGTCCTCGACTAGGTATTGGCATGGACTCATGTGTGATCCCTCTGAGGCATGGAGGTCTTTCCCTGGTCCAAACCACTGATTTCTTTTATCCCTTAGTGGAGGATCCTTACATGATGGGACGGATAGCTTGTGCAAATGTTCTGAGTGATCTGTATGCCATGGGCATCACAGAGTGTGACAACATGCTAATGCTTCTCAGCGTCAGTCAGAAGATGAACGAGAAGGAGAGAGATCAAGTGATGCCTTTAATGATGAAGGGCTTCCGTGATGCAGCAGAGGAGGCTGGGACTTCGGTAACCGGGGGACAAACAGTCATCAATCCCTGGATCATCGTTGGGGGTGTGGCTTCTGTGGTGTGCCAGCCCAATGATTTCATCATGCCTGACAGTGCTGTACCTGGGGATGTGTTAGTTCTGACTAAACCTCTGGGAACTCAAGTAGCAGTGAATGCCCATCAGTGGCTAGATATACCTGAGAAGTGGAACAAGATAAAGTTGGTGATATCCAGGGAGGAGGTGGAGCAAGCTTATCAGGAGGCTATGCTCAACATGGCCACCCTCAATCGCACTGcTGCTGCCTTAATGCACAAATTTAACGCACACGCTGCCACAGACATCACAGGCTTCGGGATCATAGGTCACGCACGGAATCTCGCCCAGCAGCAGAAAAATGATGTTGCCTTTGTCATTCACAACCTTCCCATTATCTCCAAAATGGCCGCAATCAGCAAGGCTGGTGGCAACCTGTTTGGGCTTTTGCATGGCACGTCTTCTGAAACATCAGGTGGTCTGTTGATCTGCTTGCCACGTGAGCAAGCTGCCCGCTTTTGTGCCGAGATGAAATCCAGTCGTATGGGTTTGTCGGGAGCTGTGGGGCAGGACGGAGGGGCGGGTGATGGGCAACAGGCTTGGATCATTGGCATCGTGGAGAAGGGCAATCGTTGCGCCCGCATCATTGATAAACCTCGGATCATAGAGGTCCCGTACCGTGGCTCTGTGGTCAGCGCACAGGAGGGGAGCAACAATAACGCCAGTCCTCCTGAGGTGCAGCTGACCTAGCGGCTCCACAGAGGCCCTCTCAGTGAGCTTgataaatttgtgtgtgtgtgtgtggccataACAGACATGGGGTTTGTGTAAAGGACGGAGTATGTGTGGTTATTCCTGCTGTCCATTTCCTCCCCCTGTTCAACCAAAGGGTTGAGAGCAACAGaccaaaaatatcttgatttaCCTGGTGGGAGATGGAATGGACAACAAGCGAACAAATTTTCATCTCATTTCCCAATTCattctttcaaacacacacagctccattttgtttctctctttttttgtcagttgagctgtttttattgtttttcggctgttctttaaaagtagttcacccaaacgaCACCCAAGCTGAGCTATGTTGCTGAAAACCTATATGCTGCTTATATATTTGCAACTCATCATAGTGACTatcaaaaaacatcataaaagtaGCTCTTCTCCACTATATTTCAAGTTTCTTCAAGACAGAAACATCAAAAATGTTCgtactgttttattttcaagcacaaaatatccaaacattctttaaaattacAGCTTGCttctgaaaaacagacagaaactcTTACCTTCATGCCACTTAAATGTTGAATGAGATTTGTACTTTGGGGGGATACTAAGTGTTTTCTCTATCAGCAGACAAAATTTGTTCAAAACTGTGATGTATCAACTAAGCTCCGGATAATCTAATAATTCTGGTTATAAGGAAAAGTGCTTAACTTCTGTTTCGTGTTCCTCTGAAAAAAGAACATGagggtttggaataacatgaagTGGAGTAAGtgctaaaatgtacatttttgggtgaactattcctttatctAGAAAATGTTtgaccaaaaacatttttttgtttttctgagcttAATTCTTTCTGCTTTATGATGTGATGGCTTTGGGCCTCACACTAAAATGAAAGCCGTGCTTACCAAGAAAACATTCCAATGATCAATCCTGATCTATCAAACGCTTTGGGTAGCAATGATCCTAAAATGACaatcaaaagtgtttttttttaagccatcTGACAGATGCGTCAAAGCTGGGCACGCTGTCACACCAATGTATCCTGAGGCCTGAATAATCATAATCGTTTATttaattgtgatatttattgGTACAATCAATATTGAATTTGTGTCAaagatttaaatgcaattatccAAATTtcaagtgttgtttttttaggtgATGCTGATCTTGTACGCTCCACATAAGTCTGAATGTTCCACCTGTTTTAATAGGACATCTTTGTAACACTGACATATGCCTGGTAACATCAGTTTAATGTTCTCTCTTGTGGTTTGTTTTCCTGAATAGAGTGACCTTACTctggttagattaggttagacTGGTTCTTCATTCATTAGAATACATAAAAAGTGTCATGGTTTTAGGGGCAGCAGTTAATTCTGTATGATTGTGTGGAGAAATATGGATGATGTGCATCGAaactctctttcttctctctcgtTCACTCTGTAGAGCAGAAGATGAGGTAGTCTGGTTCTCTCCCTTGTATTTGAGAAAGGGTTGAGCAGCTTTCTCTGGTCCAGTGGGTGAGCCCAGAATGCCCGTTGTGCCAATCTGAATGGCTGGGACAGAACAGCAGTGTCCACAGTCCTCTTTATGACGCCTCTCTCTCTAACCCATCTCATGGGACGGGCGAGGTTGATGTTAGATAGGAAGGGATAGGCTGATCTGCCATGTTCATTCACTTGCCACTGGTTTTGTCATTGCAGTTTTCATCCGTAATAAACCTGTAATTTCTCTAA

Function

symbol description
sps2 Predicted to enable purine nucleotide binding activity and selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to be active in cytoplasm. Is expressed in several structures, including egg chamber; embryonic/larval gut; midgut primordium; and presumptive embryonic/larval system. Orthologous to human SEPHS1 (selenophosphate synthetase 1) and SEPHS2 (selenophosphate synthetase 2).

NR:

description
PREDICTED: selenide, water dikinase 1-like isoform X2

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0004756 selenide, water dikinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224072.1 True 3251 mRNA 0.45 8 11305279 11310902

Neighbor

gene id symbol gene type direction distance location
fam120c fam120c,LOC107741318,LOC107657034,LOC107672004,LOC107562475,LOC107560908 coding downstream 45092 11245528 ~ 11260187 (-)
hsd17b10 hsd17b10,LOC107562460,LOC107741341,LOC107560905,LOC107737644 coding downstream 63691 11238450 ~ 11241588 (-)
tafa1a fam19a1a,fam19a1,LOC107657002,LOC107560881,LOC107563677,LOC107741340,LOC108436303,LOC108275576 coding downstream 92003 11175947 ~ 11213276 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding downstream 150829 11148868 ~ 11154450 (-)
lemd1 LOC107741312,LOC107657040,LOC107737650,LOC107563651,LOC107672064 coding downstream 173759 11117682 ~ 11131520 (-)
ssr4 ssr4,LOC107671948,LOC107562474,LOC107737640,LOC107741342,LOC107657031,LOC107560913,LOC108436301 coding upstream 659 11311561 ~ 11313590 (-)
ikbkg LOC107737639,LOC107672044,LOC107741321,LOC107657029 coding upstream 3803 11314705 ~ 11321862 (-)
zgc:158296 LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322 coding upstream 11753 11322655 ~ 11324876 (-)
arhgap4b arhgap4b,LOC107560914,LOC107737637,LOC107672018,LOC107741320,LOC107657026 coding upstream 14591 11325493 ~ 11351439 (-)
zgc:103759 zgc:103759,LOC107737722,LOC107562457,LOC107657028,LOC107741343 coding upstream 43978 11354880 ~ 11356679 (-)
G156762 NA non-coding downstream 60459 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 142260 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 229318 11071410 ~ 11075961 (-)
LOC122329093 NA non-coding downstream 247284 11050293 ~ 11057995 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding downstream 251984 11047145 ~ 11053295 (-)
G156785 NA non-coding upstream 42257 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 65275 11376177 ~ 11376688 (-)
G156812 NA non-coding upstream 228721 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 451538 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 470665 11781567 ~ 11782366 (-)
G156746 NA other downstream 200056 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 627129 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 919312 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 430498 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 434360 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 452807 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 489020 11799922 ~ 11801632 (-)
G156985 NA other upstream 611942 11922844 ~ 11924650 (-)

Expression


Co-expression Network