c1galt1a (c1galt1a,LOC107708852,LOC107571731,LOC107586568,LOC107695751,LOC107716090)


Basic Information

Item Value
gene id c1galt1a
gene name c1galt1a,LOC107708852,LOC107571731,LOC107586568,LOC107695751,LOC107716090
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16235766 ~ 16240924 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224074.1
ACGGCCATCCGTGTGTGATGCTGACACAGTACTCGCTCGTGACAGAGGATCTGTTGTCTTGCAATAGCACACAAAGAGGACTGTTCACCATGCGGTTAAAGGCAAACCGTATGCTAATGCGGGGCAAAATAAGTCAGGTGACTGACGTGCGCAATGGCCTTTAACTAAAGCACGAGATCGCCGGCGTTTGTTTAGGTGTGGACGTCACAACACTCACTCGAACGAGACCTGACGCGCATCTCTCGTGCGAGCTCGCGGATATTTGGACGAATAAAGACCGAAGGCATGAAACTGACCGGAGTCCACGGCGTTCCTTGGGACGTTGAGAAGCTTGCAGTGGGGAGATAAAGAATGCAAGCCTCAGTTGGCGGGATCCCTGAATTGACACCATGAAAGCAGGGAATTCAAGGTGTGCTTTCTCCCTGGGCTTCCTGGTGGGGAGCTGCACCTTGTACGTGTTTTTGAGACAGGTGTGGTTTGAGGAGAGCTTCAGCTGGGCGCGTGATGGCAAGAGCAACCCTGCTCCACTGGAGGCCGAACAAAACACCCCTAACCTTACCTGGAGAGTGGAAGGATCTGCCACGATCAACCTCAAACATCTTCACCAGCCAGgagAGGATGGTCACATCGCAGATGAGCTGTTTAAGAAAGTGCGTATCCTGTGCTGGGTGATGACAGGCCCTAATAATCTGCAGTCAAAGGCTCGGCATGTGAAGGCGACTTGGAGTCGTCACTGTAACGTAGTGCTGTTCATGAGCTCTGAGGAAGATCGCAGCTTCCCCACTGTGGGTCTGGGCACAGGAGAAGGTCGTGACCAGCTGTACTGGAAGACCATTCGTGCCTTCCACTATGCTCTGAAGAACCACGGCGATGAGGCGGACTGGTTCCTCAAAGCCGATGATGACACTTTCGTCGTTGTGGACAACTTGCGCTGGGTCTTGTCAAACTACACTGCAGAGCAGCCCATATACTTTGGCAAGAGGTTCAAGCCGTATGCGAAGCAGGGCTACATGAGCGGAGGCGCAGGTTATGTGCTCAGCAAAGAGGCCCTGAGAAGGTTTGTGGAGGGGTTCAGCACTAAAGTGTGCGCTCATACCACCTCAGTGGAGGATCTAGCGATGGGCCAGTGTCTGGAGAAAATGGGGGTGGTTGCAGGGGACTCCAGGGACACAATGCACCGTGAAACCTTCCATCCTTTCATTCCTGAGCACCATCTTACAGGAAAGTTCTCCAAAACCTTCTGGTACTGGAACTACTGCTTCTACCCAATTGTAGAAGGCCCACAGTGCTGCTCTGACCTAGCCGTGTCTTTCCACTATGTAGACCCTGTGCTAATGTACACTCTTGAGTACTACACTTACCGTCTCAGGCCTTACGGCTATCAACACCGCTACCAGCCTCCAGTGCCTGCTGTGCTGTCTTTAGCTTCCCACACTGGGAAACCCACCACAGAAGCTCAGAGATTAGAGGAGCGTGTTAAAGAAAAATCAGTTCCAACATACACCACGAAAGTGAAGACTACCGGAACAAGCCAGAAAGTCATAAATGCTGCCGAGGGGAGAAATGTAACAGAGAGAAGCACCGCATGATTGTGAATGTGATCGTTTCTTCTCGTTGTGAACGCATGTAGCATTGACAGACGTGAACTTTCAACTTGTGTAGCATTTTGAATCATCCAGACTGTGTACTGTGCAAATGGAGTGCTGAAGTGCTCACAGATCTGGGCTAATAACCAAAAGCTGTCAGTGCGAACTTCAACAATGAACTAATTTAGTCATTATTGCTGTTGATCGAGTAAATTGACTGGTCGTGCCAGTTATAAATCGACTGTAAATCACTTCGATTAAGTGTTTGCTACTCAACAGATTGTTAATATGGTCCctgctatttaaataaattattttgctgCCTTCTTGTCTGAGTACTGTGAAAGTGATCGATTCACAAGCGTCGTGGCTAAAGTACATGAAGGCTCCAATGGTTTTGTAATGAAAAGGTGACTTTAATATCACTGACGATCCTCTGGGTTTCTttgatatttctttatttggaaAGTTTTTGTTGGGATGTTGTCTGTGTTCCTTTACGAAAAAAAGACATGCTGTGTTTTAACAATCTACAGATATCCAAAGCACTAACATTCGGAAGTcaagtaaatgttaaatattagtattgtgGACAT

Function

symbol description
c1galt1a Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Predicted to act upstream of or within O-glycan processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

NR:

description
PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224074.1 True 2182 mRNA 0.48 4 16235766 16240924

Neighbor

gene id symbol gene type direction distance location
slc26a10 slc26a10,LOC107708797,LOC107681935,LOC107716215,LOC107586569,LOC107695728,LOC107570587 coding upstream 13720 16213956 ~ 16222046 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding upstream 47241 16130101 ~ 16188525 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding upstream 152764 16050565 ~ 16083002 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding upstream 186858 16043260 ~ 16048908 (+)
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding upstream 197252 16024223 ~ 16038514 (+)
birc5b birc5b,LOC107571769,LOC107708796,LOC107695794,LOC107716091,LOC107586566,LOC107681933 coding downstream 93577 16334501 ~ 16335613 (+)
zgc:153867 zgc:153867,LOC107586536,LOC107570608,LOC105897346 coding downstream 112798 16353722 ~ 16360814 (+)
huwe1 huwe1,LOC107716223,LOC107586534 coding downstream 162988 16403912 ~ 16439274 (+)
l1cama LOC107708848,LOC107681982,LOC107570628,LOC107716224,LOC107586533,LOC107695787 coding downstream 204197 16445121 ~ 16490079 (+)
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding downstream 254032 16494956 ~ 16505598 (+)
G158117 NA non-coding upstream 270002 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 286345 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 297895 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 353874 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 407833 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 298612 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 304917 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 308315 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 314493 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 367901 16608825 ~ 16611041 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other upstream 152237 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 212372 16022199 ~ 16023394 (+)
G157620 NA other upstream 931216 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1239621 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1477549 14725910 ~ 14758217 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 341046 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 380274 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 394522 16635446 ~ 16669648 (+)
G158486 NA other downstream 490422 16731346 ~ 16732884 (+)
G158524 NA other downstream 841281 17082205 ~ 17082655 (+)

Expression


Co-expression Network