arf3a (arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878)


Basic Information

Item Value
gene id arf3a
gene name arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15978616 ~ 15983169 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224108.1
AGGCCGGCTCTTGCTGCTAGGTTATCTCTACGTCgtgacaaaaataaaagGCTAACCAGCTATCATGGGGAACATTTTTGGCAACCTTTTGAAGAGTCTTATTGGGAAAAAGGAGATGCGTATTTTGATGGTCGGGCTTGATGCGGCTGGGAAGACCACAATCTTGTACAAACTGAAGCTGGGAGAGATAGTGACTACCATTCCTACTATTGGGTTTAACGTGGAGACTGTTGAGtacaaaaatatcagttttacaGTGTGGGATGTTGGTGGCCAGGACAAAATCCGACCTCTGTGGCGTCATTACTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGTAATGACCGTGAGCGAGTTAATGAAGCCCGAGAGGAGCTGATGAGGATGCTGGCTGAGGATGAACTTAGAGACGCTGTACTCCTTGTCTTTGCCAACAAGCAGGATCTGCCAAATGCCATGAATGCTGCAGAAATCACAGATAAGCTGGGCCTCCACTCCCTGCGCCATCGTAACTGGTACATCCAGGCCACTTGTGCCACCAGCGGGGACGGCTTATATGAGGGTCTGGACTGGCTGGCCAACCAGCTCAAGAACAAGAAATGAGGCAGACTGGATCCAAGAGGAAATGGTGTGGCCGAAGAGTCACCTGAGTGACAGCTCATCAGGGAGCACTAGTGGTTTCCAAGTTTCTTTCATTCTGTTTACGAGCTGAAACCAACAGGAGCCGGGTCATTTCAGACATTGTAACCCCTCACTATGTCCCACCTAACAGAGCCGTGAGATGGTTGGGCAAGCACCCatgattcatattcatatttactaGTGAAGATAGACATGTTTTGCTATTCTCGTGTGATTTAAACATCTCGTGTCTCTACactgtaaatgtataaaagacATTAACACGGAGTGAATGAAAAGCTTTTACTTATATTAATACTGTGGGAGTAACTCTTAAATGCaggtcatttaaattatattaaccGCACTGATAGATGAGAAACCTGTTGATTCGGTTTCccgaaatatttaaataaaatcaagtgaaatgttattcagaaaacattaaagaaacatgttgtgttttttgctaCAGCGGTGTTGTTTTGCTACTgacaattaaatatgcattgtgatttattattagcataTCAGCCAGACTTCATGACTGTCAATGATGATGCTCTTATTGCATGCATTCACTAGCGTCTCTGCACAGGTTGCTGAGCAAGCTTTGGTTAGTGCAGTTGTATGTAAATAGATAAAGGATCTCTTGTCTTGGCATGCGTAGTTTGCGACGATTAAATAGTACATTGTTCTCTGTACAAGAACTGTTTCTTTTGTGCTGATATTGTTCACTACCCAAGCCGCTGTTTTGTCGTGTAGCTAAACGCGTTTGTTTCACTGGCTGTATCCGCTGCTTTTGCATGCTGTTTCGTCTGTGTCGTGCCGTGTAGACATGCTCATTGATTGTGTCATTGCATTCGTatgtatgtgattttttttttgttgcttgaGTTGCATGGGCAGATCTGAGGAGCTGAAGAGTAGATCTCTATAGCCCTGTGACTGGAAAGAGTGACTTTACAGTAGACACAGGTAATAGTAGACTCAAATATTTATGGTTGTGTGTATGCTCATGAAAgaagtgtgtttatatattacacgCTTAATAAAGTATGCACTTGGATAAATTAAA
>XM_043224109.1
TTTGTATCGCGAGAGCGGAGTGACTTGCTTGAAATTATCCGGTGTTGGTCTCCGAGGCTAACCAGCTATCATGGGGAACATTTTTGGCAACCTTTTGAAGAGTCTTATTGGGAAAAAGGAGATGCGTATTTTGATGGTCGGGCTTGATGCGGCTGGGAAGACCACAATCTTGTACAAACTGAAGCTGGGAGAGATAGTGACTACCATTCCTACTATTGGGTTTAACGTGGAGACTGTTGAGtacaaaaatatcagttttacaGTGTGGGATGTTGGTGGCCAGGACAAAATCCGACCTCTGTGGCGTCATTACTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGTAATGACCGTGAGCGAGTTAATGAAGCCCGAGAGGAGCTGATGAGGATGCTGGCTGAGGATGAACTTAGAGACGCTGTACTCCTTGTCTTTGCCAACAAGCAGGATCTGCCAAATGCCATGAATGCTGCAGAAATCACAGATAAGCTGGGCCTCCACTCCCTGCGCCATCGTAACTGGTACATCCAGGCCACTTGTGCCACCAGCGGGGACGGCTTATATGAGGGTCTGGACTGGCTGGCCAACCAGCTCAAGAACAAGAAATGAGGCAGACTGGATCCAAGAGGAAATGGTGTGGCCGAAGAGTCACCTGAGTGACAGCTCATCAGGGAGCACTAGTGGTTTCCAAGTTTCTTTCATTCTGTTTACGAGCTGAAACCAACAGGAGCCGGGTCATTTCAGACATTGTAACCCCTCACTATGTCCCACCTAACAGAGCCGTGAGATGGTTGGGCAAGCACCCatgattcatattcatatttactaGTGAAGATAGACATGTTTTGCTATTCTCGTGTGATTTAAACATCTCGTGTCTCTACactgtaaatgtataaaagacATTAACACGGAGTGAATGAAAAGCTTTTACTTATATTAATACTGTGGGAGTAACTCTTAAATGCaggtcatttaaattatattaaccGCACTGATAGATGAGAAACCTGTTGATTCGGTTTCccgaaatatttaaataaaatcaagtgaaatgttattcagaaaacattaaagaaacatgttgtgttttttgctaCAGCGGTGTTGTTTTGCTACTgacaattaaatatgcattgtgatttattattagcataTCAGCCAGACTTCATGACTGTCAATGATGATGCTCTTATTGCATGCATTCACTAGCGTCTCTGCACAGGTTGCTGAGCAAGCTTTGGTTAGTGCAGTTGTATGTAAATAGATAAAGGATCTCTTGTCTTGGCATGCGTAGTTTGCGACGATTAAATAGTACATTGTTCTCTGTACAAGAACTGTTTCTTTTGTGCTGATATTGTTCACTACCCAAGCCGCTGTTTTGTCGTGTAGCTAAACGCGTTTGTTTCACTGGCTGTATCCGCTGCTTTTGCATGCTGTTTCGTCTGTGTCGTGCCGTGTAGACATGCTCATTGATTGTGTCATTGCATTCGTatgtatgtgattttttttttgttgcttgaGTTGCATGGGCAGATCTGAGGAGCTGAAGAGTAGATCTCTATAGCCCTGTGACTGGAAAGAGTGACTTTACAGTAGACACAGGTAATAGTAGACTCAAATATTTATGGTTGTGTGTATGCTCATGAAAgaagtgtgtttatatattacacgCTTAATAAAGTATGCACTTGGATAAATTAAA

Function

symbol description
arf3a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3).
arf3 Predicted to enable GTP binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in extracellular exosome.

NR:

description
PREDICTED: ADP-ribosylation factor 3 isoform X1

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224108.1 False 1706 mRNA 0.42 5 15978616 15982975
XM_043224109.1 True 1712 mRNA 0.42 5 15978616 15983169

Neighbor

gene id symbol gene type direction distance location
phf8 phf8,LOC107570386,LOC107745465,LOC107681973,LOC107563633,LOC107695732 coding downstream 2907 15966421 ~ 15975709 (-)
LOC122328386 LOC107745468,LOC107681975,LOC107570394,LOC107716202 coding downstream 14197 15957896 ~ 15964419 (-)
pfkma pfkma,LOC107745467,LOC107681974,LOC107563631,LOC107716200,LOC107695813,LOC103038352,LOC108276103 coding downstream 21218 15949082 ~ 15957398 (-)
LOC122328789 LOC107681987,LOC107745464,LOC107563630,LOC107695814 coding downstream 30553 15935353 ~ 15948063 (-)
asb8 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding downstream 44291 15929873 ~ 15934325 (-)
wnt10b wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634 coding upstream 1736 15984905 ~ 15991565 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding upstream 26551 16009720 ~ 16019647 (-)
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding upstream 38148 16021317 ~ 16023370 (-)
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding upstream 100563 16083732 ~ 16099759 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding upstream 119239 16102408 ~ 16115284 (-)
G158227 NA non-coding downstream 12853 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 165689 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 189285 15728154 ~ 15789331 (-)
G158188 NA non-coding downstream 296744 15680886 ~ 15681872 (-)
G158174 LOC107571455 non-coding downstream 371536 15603848 ~ 15607080 (-)
G158282 NA non-coding upstream 118456 16101625 ~ 16102214 (-)
G158284 NA non-coding upstream 134712 16117881 ~ 16118214 (-)
G158333 NA non-coding upstream 263847 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 433756 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 440795 16423964 ~ 16424362 (-)
LOC122329227 NA other downstream 261366 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 504226 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 676934 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 930272 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 1388994 14570347 ~ 14589622 (-)
G158231 NA other upstream 24937 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 160664 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 257641 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 372200 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1193456 17176625 ~ 17184385 (-)

Expression


Co-expression Network