atp6ap1lb (atp6ap1lb,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC103031199,LOC108436292,LOC107699574,LOC105890636)


Basic Information

Item Value
gene id atp6ap1lb
gene name atp6ap1lb,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC103031199,LOC108436292,LOC107699574,LOC105890636
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11685712 ~ 11693491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224116.1
GCGTGGGCCGCCCGTCAGAGAGCCCAGGTTTAGGGATGTGCGTTCAGAGCAGATTATGAAGCAGACCTCATCTCTGGCAGTCTCGTCAGATTGTCTCAATGGCTAAACACAagcttttcctgtttttttctctgttactgtgtgtgtttatctctcTGTCTTTGCCCTTCGATCAAGTGCCTGCGATCCTGGACAGGAGCTCGGAGGTCCCACCCTATCAAGCTGTGAGAATTAGAACAGATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTTTGGATGGCATCTGCATGCCCAGCCCAGAACCAAGCGGAAGTTACTACAGTCTACCAGCTCGGGACCCTACTCCCCACTGACTGTAGCGTACAACGGCAAGATATGCATccttttcaaagcaaaaagacTGGCTATTCGATACAGAAACAACACTTTCCTGGACCTCACAGAGAGGGTATTTGGACCCAATGCACAAGTAGACACCAAAGGCTCTGTTTGTACAAAGGAGAAGGCCACgcTATCTTTGCGTTTGGGTGATTTGGAAGACATCAGGGGACTAGTCATCAGGCTTCAGATGTCCAACACATATTATGAATCAGTGGGCCAGAACTGGTTCACACTGGACAGCGTTCACATCCACTACAACTGGACTCATGAGGCCACGTTCAATGCTACGGAGGTCTATGCCCCTGCCACCTATTCTTACCACTGCCAGCATGTCAGCAGCTTACAGAAATATGACACCCTACTGGTGCCCAGCTCCCACACTGACAGCTCGGCAAACTGGCACATCACTTTCACAGATTTTCAGATCCAGGCCTTTAATGTCCAGTCCAACAAGTTTGCTTCAGCCAGCGACTGTGCAACCTTCTTCACTCCAGCCATCCTGATGGGCCTGATCACCTCCCTGATTCTGCTGCTGGTGTTGGCCTACGCCCTGCACATGGTTGTCCACCTCAAGCACATTGACCGTTACGAAGAGCACAAAACCACCGTCTACTTCCCCCGCACCCCCGAGGCCGAGCTCCCAGACAAGAACAGCGTGTGAGGAACGACGACAGTGCTGTAAAACCAGCAGCAGGCCAGCGTGGAAAGGATTGCTAGTTCTGATTCTGGATGGCTGCGTTGTCCTCTTGGTCTTCCTCCTGCCTGGCACGAAACCCTCTCCTTATCACTGTCTTAACCTAACTTCAGTCAGAGGATGAGATCACCTGATCAATCAGGTGTTAAAACCCAGGCTGGAGCCAAAACCTGGACAGATCACGGCTTTCCAGGACCGGGACTGGGAAGCCTATGAAATGGGGACAAATAATGTGAAGATTGCCTTTTAATAGACCACCATTCTGGCGGACTTTTCAAAGCACTTCTCTGACTGGATACAAGAACTGTGGTTAGAAATATACAAATTGACAATGCGGCGGTGGCAGAAGAGAAAAGACTGTGAAACAGAAATGACTGTGGTTTGATATGGAAGTCTTCTTgggttttttatttacagtacttAATAAATCACCATCTCATGCATCAGAAATGGAGTCCATAGACTGATCTGCCAATTACAAGAACTGTTTTATGACTGCCAAAGTGGTGCAAAACTGTTTGTCAGCCTCGATGGGTAACTGACAGTAACAATGTGAATACGAAACATACAAAACAATCCATAAATGTACAATGCTTAATACTATTTATGTATTCCAGGACTATACAATGTAGATTCAGGAACTCCATAAATGTACTCATTGGCTTGAAACGATCAGCTAGACATTCATATAGATCTAGATTCAactgctgttttagtaattaacAAACTTCCAGTATTAAGCACCTtcaaatctataaatattaaGTGCGTAAAGCGTAtagcaagaaaaaaagactttttttaagctTCGGAAACTGACATATtgcacagaattttttttatatgatctCATAATTGCTAGATCTATATGCCGTCCCTTTTCAGGTGGATTATATAGGACTAATAGATGACTTTAGCACCCCTTGAGAATTTATAGCACAGACAGTATAACTATAGTGAGGTAATGCTGAAAGAATGCTGTACAATTATTCATGTAAGTGTTTAATACCCTCAGTATCATAATCAGTATACCTCTATATCTACAATTATAACATCAGTAACTCATTATCACAATAACCTGCAGCATGACAATGACTAGAGATAAACCTCTACCATGGCACGTCTGATACTGGAGGTAGTTATGTGTAATGTGTTCATTTGAATGACGGTCGTACACACTGAAGTGCACAAGAAGTTTCCTGAACATCAGTCAATTCAGTCTGAACAATAAACAGTGATCAGATCAAAA

Function

symbol description
atp6ap1lb Predicted to be involved in regulation of cellular pH. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

NR:

description
PREDICTED: V-type proton ATPase subunit S1

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224116.1 True 2382 mRNA 0.44 7 11685712 11693491

Neighbor

gene id symbol gene type direction distance location
LOC122328536 LOC107737719,LOC107671965,LOC107560886,LOC107656999,LOC107570275,LOC107712682,LOC101883217 coding upstream 47689 11634276 ~ 11638023 (+)
apobec2b apobec2b,LOC107737624,LOC107560928,LOC107672022,LOC107657013,LOC107712740 coding upstream 156051 11527406 ~ 11529661 (+)
si:dkey-109j17.5 si:dkey-109j17.5,LOC107672024,LOC107737623,LOC107560927,LOC107562462,LOC107657015,LOC107712743 coding upstream 160844 11520750 ~ 11524868 (+)
ccdc115 LOC107560885,LOC107737721,LOC107672061,LOC107657017,LOC107562463,LOC107712745 coding upstream 165107 11518832 ~ 11520605 (+)
trnae-uuc_33 NA coding upstream 167176 11518465 ~ 11518536 (+)
slmapb slmapb,LOC107560933,LOC107712736,LOC107699575 coding downstream 2325 11695816 ~ 11704390 (+)
flnb LOC107737717,LOC107560870,LOC107671935 coding downstream 12268 11705759 ~ 11722286 (+)
abhd6b abhd6b,LOC107737716,LOC107712730,LOC107560889,LOC107671974,LOC107699577 coding downstream 29665 11723156 ~ 11726492 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding downstream 45304 11738795 ~ 11741871 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding downstream 68938 11762429 ~ 11794733 (+)
G156701 NA non-coding upstream 29332 11655795 ~ 11656380 (+)
G156700 NA non-coding upstream 30396 11654916 ~ 11655316 (+)
G156699 asb14b,LOC107560887,LOC107671999,LOC107737718 non-coding upstream 31095 11654255 ~ 11654617 (+)
G156698 asb14b,LOC107671999,LOC107560887,LOC107737718,LOC108276494 non-coding upstream 31552 11653380 ~ 11654160 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding upstream 34605 11614130 ~ 11651107 (+)
G156828 NA non-coding downstream 40765 11734256 ~ 11734937 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding downstream 70216 11763707 ~ 11822844 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding downstream 134250 11827741 ~ 11926375 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding downstream 253193 11946684 ~ 11972922 (+)
LOC122328486 NA non-coding downstream 336655 12030146 ~ 12037888 (+)
G156586 NA other upstream 508679 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 600108 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 761724 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 984817 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 1113466 10563344 ~ 10572246 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 3923 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 37489 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 552702 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2400587 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2606210 14299701 ~ 14343274 (+)

Expression


Co-expression Network