LOC122328434


Basic Information

Item Value
gene id LOC122328434
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1362002 ~ 1371474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224122.1
CAGATACTGTACCTCACTCACTGGACTATTAACGAGCGCATTCAGATTCGACTTAAAAGAAACTCAATTTGGATATGACCGAATACTCGGTATACTAAACGGATGTTTCTGTTTTCACCCCGAGCCGCGCGATCGACTGTCGTGGAAAGATGCAGCACTTAAATGCCGGAGAATAAAGCACCTCGAGGGATGTTTTGAACCGGggactctttctgtctttttttttttttttatttcggaTTTGGAAGCATTTGCAAACTGACCATGCGCGAGTTTGATGGAGTTGTGTCACGCCGTGAACCGAGCGGCTCCGTTCACAGGATTTACCTGCCCTTCATCTTACTGCTGCTCATCTTCACTCCCAGAGTGGACTCGTCCTGGTGGTACATTGGTGCGTTAGGTGCACGGGTCATATGTGACAACATTCCAGGGCTGGTGAACAAGCAGAGGCAGCTTTGCCAAAGACACCCAGATCTCATGCAGTCCATCGGAGAAGGAGCCAAAGAGTGGATCCGAGAATGCCAGCACCAGTTCCGACACCATCGCTGGAACTGCAGCACGCTGGAGCGAGACCATACTGTGTTCGGCCGCGTCATGTTGCGCAGTAGCCGTGAAGCAGCATTCGTTTATGCAATCTCCTCTGCTGGCGTGGTTTATGCCATCACCAGAGCGTGCAGTCAAGGAGAGCTGAAGATCTGTGGCTGTGACACCAACAGAAGAGGCCGGGCGAGCGACGAAGAAGGCGACTTCGACTGGGGCGGCTGTAGCGACAACATCAACTACGGTATCAAGTTTGCCAAAGCTTTCGTGGACGCCAGAGAGAGAATGGTCAAGGATGCCAGAGCACTGATGAATCTGCACAACAACCGCTGTGGGAGAATGGTCCTGGAGAGGAACATGCGTCTAGAGTGTAAATGTCACGGCGTGTCTGGATCCTGCACCACCAGGACCTGCTGGATGACCCTCCCCAAGTTTCGTGAGCTTGGCTTTATCCTCAAAGACAAATACAGCCACGCCATTCACGTGGAGCCGGTCAAAGCCACCCGCCACAAGAGGCCCACCTTCCTCAAGGTCAAGAAGCCCTACTCGTACCGCAAGCCCATGGACACGGACCTGGTGTACATCGAGAAGTCGCCCAACTACTGCGAGGCGGACCCGGTGACGGGCAGCGTGGGGACTCAGGGCCGGGTGTGCAACAAAACGCTGCTGCACCATCCCAACGGCTGCGACCTGATGTGCTGTGGCCGGGGATACAACACACACCAGTACTCACGCGTCTGGCAGTGCAACTGCAAGTTCTTCTGGTGCTGCTACGTCCGGTGCAACACCTGTAGTGAGAGGACAGAGGTGTACACGTGCAAGTGAGCCGCTCTTACGGACCTCGTTCTGATACAAGAGGACTCTATGAGGTGGCATCTGTTCTTTTGCACAAGGCTCTACTTCAGACTCGCTTTAATGGAAGATCATTGAGATCGTCAAAGCTTTACTCTGGAGAAAGAGGAACTGAAAGTCTAAATCACTGTCTGAATCTGTCTGGATTAAAACAAGGATCTCCGTGGAACCCAGAACAGCAACCTGCACCTTGATTTTACCGATGAGCTACTGAGACACGGACATCTTTGCAGGCATGCAGCAAACCTATATTGACAAACAGAGCAAAACTAGAAATTCCAGAAGTAAAGGGAAAGGACTTTCTAATAgttttttgcttcaaatcaaTCCAGGTGATTTATTACCACCCAAAGTGCTTTGTTTTCTAAAAGTGCTTAACATTCGATTACTCTTTATTTGAAGTtttccttgttacagtgtaattacacatttaagtactgagtaatattaaagtgtccctattatgggttacgaaaggtttatatatttttttggggtGTCCTAAATGACAGGTTGAAATACATGCAAGGCCAAAATATAGGCCTTTATAatccacatttattttatatttatattacatttcatttgaagCAGTAATTGCgagcttttaatgctccaaaagcggcacctagtggcaaagaatgaatgtacattttcattcagacaaacgctaaaagaccaacaagtgggtggcaatatgttaatgtttcatttcgGGTCAACATGTTTTAAACATGACTCATCTCAAACCTTCAGAGTCAGCTCCTTTCCTTTGAGAGACAATTACTTTATAGACTTTTAGGCTTAAAACTTTGCAAGATGTTTTCGTTCGCTTAGAGCTGTGACACTGCATTAAAGCTCGCTTTCAGAAattcataataggggcactttaatgaactacatgtacttactatatggttagggtttgtcttggggttacttgcatgtaattatgcataattaattgttattataatagtaagtacatgttacatgtaacaaggacaccttaaaatagcgTTACCAATTATGCTTAAGTAAGAATATTTAAGTGTACTCAATTATGCTATTTTGGGACGCCatgaatataaactaaaatgtacttttaacatACTTTCTCTGCAGAAACCCACTAGTGCATGAAAGCTAGTGCCTCtaaatagcacagttgagtgCACTTGatgtttttaagattattttaagaagtacagccttttttttgtgttttaattacaaaatgagTGCGTCAAAATAGACcatattatgctttttaaattgcCTTATTtaagatttgtattttgtaaGCGAATTCCTAATATAGAAAAATGTATAGGAAAAGAATATTGGAACCAAGGTTGCTGATTGCGCTGTTGTTAAATTCCTCCAAAcaactgattttatttatttattaaaaacaatgttgttaACTGTAATTGACGAGACGCTGGAAACAAACAGCGCATCTGCATCTCTGCTCATGAATACACTGGGATTTGTATCTTCTGAAAGAATagctttttttagtttacaagACAagaagcaatatttttttttttttctatgagaAATTTCCTGTATGCTGCTAGTCTGGAATAATCACATTCGCTGTAATATTACCAAACTACTGACTACAAGATTTTGTAACTGGTATAGTGATGAATCCAGAAATGTAGAATTTACActgaaattgtaaaatattggtAAGAGAgtatattttgtaaaagaatatttttatatgaatgttttatttatactttgtCATTTCTGAACACCCGATGCATTGCGGGTGACAAAGTTGGAATGTggatgttaattattaaaatcaa

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224122.1 True 3218 mRNA 0.42 4 1362002 1371474

Neighbor

gene id symbol gene type direction distance location
LOC122329156 nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952 coding downstream 17436 1282121 ~ 1344566 (-)
b4galt5 b4galt5,LOC107736963,LOC107684873,LOC107656676,LOC107566184,LOC107725076 coding downstream 177336 1165023 ~ 1184666 (-)
zgc:113278 zgc:113278,LOC107714267,LOC107555798,LOC107736961,LOC107656677,LOC107684897,LOC108427771,LOC105906438,LOC107564801 coding downstream 266564 1087192 ~ 1095438 (-)
arl6ip5b arl6ip5b,arl6ip5,LOC107684895,LOC107656678,LOC107736957,LOC107564791,LOC107555805,LOC102786473 coding downstream 280257 1077808 ~ 1081745 (-)
srsf6a srsf6a,LOC108276344,LOC107714268 coding downstream 286335 1070758 ~ 1075667 (-)
LOC122329157 NA coding upstream 23955 1395429 ~ 1401790 (-)
LOC122328511 LOC107690110,LOC107567958,LOC107724207,LOC107578799 coding upstream 111238 1482712 ~ 1494028 (-)
LOC122329158 NA coding upstream 182788 1554262 ~ 1557987 (-)
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 234803 1606277 ~ 1608631 (-)
LOC122329161 LOC107678070,LOC107571224,LOC107705859 coding upstream 238795 1610269 ~ 1613006 (-)
G153967 NA non-coding downstream 154415 1206700 ~ 1207587 (-)
G153966 NA non-coding downstream 155400 1205479 ~ 1206602 (-)
LOC122328476 NA non-coding downstream 398425 960274 ~ 963577 (-)
G153893 cnbp non-coding downstream 462236 841719 ~ 899766 (-)
G153911 NA non-coding downstream 585952 770513 ~ 776050 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding upstream 17888 1389362 ~ 1393135 (-)
LOC122328606 NA non-coding upstream 48383 1419857 ~ 1420454 (-)
LOC122328609 NA non-coding upstream 222138 1593612 ~ 1594209 (-)
LOC122328398 LOC107678070 non-coding upstream 233138 1604612 ~ 1606221 (-)
LOC122328412 LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794 non-coding upstream 237686 1609160 ~ 1610175 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 297228 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 479818 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 576123 779085 ~ 785879 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 136224 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 731236 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1398008 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1415822 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1498144 2869618 ~ 2874758 (-)

Expression


Co-expression Network