bhlhe23 (bhlhe23,LOC107737661,LOC107560898,LOC107671927,LOC107657004,LOC107756976,LOC107563681)


Basic Information

Item Value
gene id bhlhe23
gene name bhlhe23,LOC107737661,LOC107560898,LOC107671927,LOC107657004,LOC107756976,LOC107563681
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10985385 ~ 10987412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224127.1
ttttattcactttttatgCACGGCTCAGGAATAAATCCAAATCTTGAATAATTATCACTTAGGAGATGTTCTGCATTTGTTAACTTATTAACTGCAAGAAACAGCCTTGTGTACGcggtgcattaaattgatcattgGTTAATTAAAAAGACCATTTCATTAGGACAATAATTCTGCGTTAATTCGATGTAACTGATTGGAATATTACACAATGTTAGGTACAATGACTGTTTACTACCGCGTGCCGGCCATGAATTGCGTTATGCCACCATTTGTTCAGCAGTTATCATCGCTATAGTTGAATTTAGGAGCGTGCCAGTTTCTAATCTTCTTAATTAAAACGCCCTTCTGATTGGACAGAGTGATAATCCCGCGGGGCCTCGCGCTCTTACTCACCAGCAAGTAGGACTGCGCGCGAGTCTCAATCTGCCCAGGGCGAGGGCAAGACGCACTGCAAGAACGCGCGCGAGTTCAGACGACGCGTCTAAAGTGCACGCAACCATCGCTGTCTGCGCGGGAGAGCGTGATAGGGGAAGAAAGATCTCTATCAAAAAGTGTCTTCATTTTCAGCAGACCTTCGGAGAACGCCAAcggaagaaaagaaagaagacgAGGTCGCTTTCAAGAGCGCGCGCCAAAGTTTTCCATCCGCTccgttttttgttttagttttatttcgtTTCTCCAAAATGAATGTCGGCGAAGAAAACTTGCTGAAATCGATCAGCAACGACACCCTGCTGGACCTGACGCAGCGCTACGGGCAGTCCGCCTTCGGCTTCGGCGCTGGCCACGGTACCGGGAGTCCCGGCCGTTTCTCCCTCACGCCTGCCGCGGATTTCCTCTCCGGTCAAACGGGAAAGTCGAACGAAAGCGGCGGAGAGCAAACCAGCGACGAAGACGACGGCTTCGACCACCTCGAGTCTCGCAAGAGAGGCGCGGGCTTCGACGAAGAGAAGCACCCGAGCGCGCTCGCCAAGAAGCCGAAGGAGCAGAGATCTCTCCGGCTGAGCATCAACGCGCGCGAGCGGAGACGCATGCACGACCTGAACGACGCGCTGGACGGCCTGAGGTCTGTGATCCCCTACGCGCACAGCCCGTCTGTGAGAAAACTCTCAAAAATCGCAACTTTGCTCCTCGCAAAAAACTACATCCTAATGCAGGCGCAGGCGCTGGAGGAAATGCGCCGGTTGGTGGCTTATCTGAATCAAGGACAGACTATAACTTCGCCGATTCCCACCGCGCTCGCGCCCTTCGGACAGGCGGCCGTGTATCCGTTTTCGAGCACGGCGCTGGCCACCTGCGCGGAGAAATGCAGCTCGTTCAGCGGGACCCCGTCCAACCTGTTCAAACACTGCAACGACAAGCCTTGACTTCCGCGCGCCGAACTCTTCCCGCTTCACCCTTATGTTGCTCTGAATTCGCGTTGTTTTGTTGGGAACGGGTTTAGGTCTGATTCAAAACCCCCGCTGCGTGTTTAAGTAACCACGATGATTTATTAGATAATACCACAAATAATGTTAACCGAGGGACACGGTGTCACCGGAACGAGCTTTGAAAaccctacatttttttaaaaagcctttcCCCTTTTACCCCGAGTGACGGATTGAAAACGATTAGTATTTGTgtgaaaaactaacaaacaagaAATTCTATGTTCACGGCTTGAGGAGGACTCGTTTCTCAGTTTAAGCGTTTTATCTTTCGGTTTCAGCGTTGTTGGTGAACTATGCAATTCACTGCAGTTGCCCACAAACAGTAATTTCTTAAAAACCTGTGTCAGAAATGAATAAACGGAAGCCGAGCTGTCTCGCCTCCATCGGTGTATTAGGAAACACGGTGTAACACTCTCAAATGTTTGGCctgaaaagattttgtttttgttattgcaCAATTCACTTGATTGTATTGTACAACTGTGAAGAATAACTTGATCGAGCCTACACAGCATTTGATCTTGTTGCGACATGAGTTTCatactgtatattgtttatatgtctttataattaaaacatatatctATGA

Function

symbol description
bhlhe23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and retinal inner nuclear layer. Orthologous to human BHLHE23 (basic helix-loop-helix family member e23).

NR:

description
PREDICTED: class E basic helix-loop-helix protein 23

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224127.1 True 2028 mRNA 0.48 1 10985385 10987412

Neighbor

gene id symbol gene type direction distance location
dnajc5ab LOC107747984,LOC107672029,LOC107563663,LOC107719908,LOC107657050,LOC107560895 coding downstream 50478 10923126 ~ 10934907 (-)
trim101 LOC107719918,LOC107671958,LOC107560876,LOC107656995,LOC107747989 coding downstream 62305 10915631 ~ 10923080 (-)
tpd52l2b tpd52l2,tpd52l2b,LOC107672016,LOC107719909 coding downstream 71182 10903880 ~ 10914203 (-)
ppdpfb ppdpfb,ppdpf,LOC107719911,LOC107560892,LOC107657053,LOC107747982,LOC107563664 coding downstream 83599 10899826 ~ 10901786 (-)
dnmt3bb.1 dnmt3bb.1,LOC107672053,LOC107657059,LOC107747976,LOC107563667,LOC107603157,LOC108276083 coding downstream 220377 10730061 ~ 10765008 (-)
tfip11 tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 coding upstream 74945 11062357 ~ 11068609 (-)
pm20d1.2 pm20d1.2,LOC107672051,LOC107560903,LOC107737652,LOC107560862 coding upstream 119529 11106941 ~ 11111646 (-)
pm20d1.1 pm20d1.1,LOC107737726,LOC107671971,LOC107656991,LOC107560862,LOC107672051 coding upstream 125597 11113009 ~ 11117428 (-)
lemd1 LOC107741312,LOC107657040,LOC107737650,LOC107563651,LOC107672064 coding upstream 130270 11117682 ~ 11131520 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding upstream 161456 11148868 ~ 11154450 (-)
G156538 NA non-coding downstream 25539 10959635 ~ 10959846 (-)
LOC122329022 NA non-coding downstream 102733 10880591 ~ 10882652 (-)
G156478 NA non-coding downstream 257137 10727964 ~ 10728248 (-)
G156471 NA non-coding downstream 282564 10702596 ~ 10702821 (-)
G156469 NA non-coding downstream 285161 10698597 ~ 10700224 (-)
G156715 NA non-coding upstream 46330 11033742 ~ 11035495 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding upstream 59733 11047145 ~ 11053295 (-)
LOC122329093 NA non-coding upstream 62881 11050293 ~ 11057995 (-)
G156726 LOC107737655 non-coding upstream 83998 11071410 ~ 11075961 (-)
G156759 NA non-coding upstream 175252 11162664 ~ 11163019 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 307235 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 599418 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 618016 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 625599 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 1151703 9831809 ~ 9833682 (-)
G156746 NA other upstream 113332 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 753988 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 757850 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 776297 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 812510 11799922 ~ 11801632 (-)

Expression


Co-expression Network