LOC122328469 (sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007)


Basic Information

Item Value
gene id LOC122328469
gene name sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14025634 ~ 14029168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224171.1
CTTCAAGCTCAGTTCCCAAAGTCCCTTTCGAGGATGCATTTCTAAAGCCTGCGTCCCAATCCTCACACGCTAGCCTCGCGTCGCTCTTTATTGACGGAGGACAGATTCACGCCCCGGCGTCATTAGGAGGAGAGGCAGATTGTAGTTTACATATTTGAAACTCTCAAAGCCGCTCGCGCGCAAAGGAGATCCCGCGCGACAGCACAGAAGCTGAAGATGTCCGCGTGCGTTTCTTTTTCTCGCGGCGCTCTTGCTCTGCGCGGCACCAGGACGCTGTTGCTGGTACGATGTGCCCAGACCGCAGCTGCTCCTGCccctgagccaaaaataaagagatttcAGATTTACAGATGGGACCCTGACACACCTGGTGACAAGCCCCGCATGCAAACCTACGAGATTGATTTGAACACATGCGGTCCGATGGTTCTTGATGCtctcatcaaaattaaaaatgaaatggacCCGACACTCACCTTCAGACGCTCATGTAgagagggTATCTGTGGCTCATGCGCTATGAATATCAACGGAGGCAACACTTTAGCCTGCATAGACAAAATAGATACAAATACCAGCAAAGTGACGAAGATTTACCCCCTGCCTCACATGTATGTCGTGAAAGATCTCGTCCCTgATATGAGCAACTTTTACGCTCAGTACAAGTCCATCGAGCCCTATTTGAAGAAGAGGGACGAGTCAAAGCAGGGAAAAGAGCAGTACCTGCAGTCAGTCGAGGAGCGTCAAAAGCTGGACGGCCTGTACGAGTGCATCCTCTGCGCATGCTGCAGCACCAGTTGTCCTAGTTACTGGTGGAATGGAGACAGGTACCTTGGTCCAGCTGTGCTCATGCAAGCCTATAGGTGGATGATTGACTCTCGTGATGACTTTACAGAAGAGCGTCTGTCCAAATTACAGGACCCTTTCTCCCTCTACCGCTGTCACACGATAATGAATTGTACTAAGGCATGTCCTAAGGGACTCAATCCTGGAAAAGCCATAGCCGAAATCAAGAAAATGATGGCCACTTACAAAGAAAAGAGATCGTATGCAGTCTGACTTTTGAATGCTGGAAATATCatgtattgtttaaattattgtgtaaatgtgtgaatTCAGCATGGAGTGCTCGCTAAAGTGCGATATTTAGTTACTTGATAGCGGAGTCCTAATGAACAGTAACTATAACTGTCATGCATTTTACTTCTATTTTAACTTAATTGTAGTTCTGCTGTACATGAATATCCAAATGCAGCGACCTGTAAAAAAACTGCAtgatatttaacatataatagCGTAACGTTTTTGTTGTGTCCTAGTTTGTCTTTTGTGTGGTAGATTCATACTGTATACATTGTCTTATACTTCTCAAAATATACACAGATATCAGCACGTTTAAAAGCACAGTCATCTCTTCGCAATAAACTGTACTCTTTATAGGTTA

Function

symbol description
sdhb Predicted to enable iron-sulfur cluster binding activity and ubiquinone binding activity. Predicted to be involved in aerobic respiration and respiratory electron transport chain. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Predicted to be active in mitochondrial membrane. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHB (succinate dehydrogenase complex iron sulfur subunit B).

NR:

description
PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224171.1 True 1444 mRNA 0.45 8 14025634 14029168

Neighbor

gene id symbol gene type direction distance location
atp13a2 LOC107737536,LOC107673093,LOC107716130,LOC107687434 coding downstream 108 14013247 ~ 14025526 (-)
sult1st5 LOC107591081,LOC107673112,LOC107737538 coding downstream 17899 14002436 ~ 14007735 (-)
tmem82 tmem82,LOC107737537,LOC107593928,LOC107673057,LOC107716128,LOC107580573,LOC107687464 coding downstream 22949 13999885 ~ 14002685 (-)
spen spen,LOC107737540,LOC107591084,LOC107687431,LOC107716126,LOC107593929 coding downstream 26062 13968518 ~ 13999572 (-)
epha2b epha2b,epha2,LOC107591085,LOC107737541,LOC107673100,LOC107687430,LOC107716125,LOC107593930 coding downstream 70079 13932988 ~ 13955555 (-)
tmem240a tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995 coding upstream 2558 14031726 ~ 14040078 (-)
ctdsp2 ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442 coding upstream 56418 14085586 ~ 14094436 (-)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920 coding upstream 71229 14100397 ~ 14104226 (-)
syt6a syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664 coding upstream 121355 14150523 ~ 14196687 (-)
avpr2aa avpr2aa,LOC107591070,LOC107737524,LOC107687451,LOC107716149,LOC107673055,LOC108436342 coding upstream 228682 14257850 ~ 14272460 (-)
G157826 NA non-coding downstream 200045 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 252326 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 278463 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 589773 13433755 ~ 13435861 (-)
G157365 NA non-coding downstream 903608 13121813 ~ 13122026 (-)
G157863 NA non-coding upstream 28669 14057837 ~ 14075937 (-)
G157874 NA non-coding upstream 112771 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 114494 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 207184 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 213413 14242581 ~ 14243955 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 743307 13280256 ~ 13282327 (-)
G157367 NA other downstream 808226 13141078 ~ 13217408 (-)
G156985 NA other downstream 2100984 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2167666 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 193641 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 297798 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 541179 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 655722 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1017984 15047152 ~ 15048344 (-)

Expression


Co-expression Network