tmem240a (tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995)


Basic Information

Item Value
gene id tmem240a
gene name tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14031726 ~ 14040078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224172.1
ATGAATGTGAAAGCGGCTTGCCACACACAGTGTAGCGATCACAGCAGATATGTAAAGTCGACCAcacatttctacaaataaaGCCTCGACGACGACTCTAAGGTCTGCTAGATGTCAGCTCCTAGACAGATATCTCAGAGAGCTAAGGCCAGCTGATCCTGGCGAGACGTTTCCAGCGGCGTCGGAACGCGAAGGAGGAGAGAGGCAGCAGCATCAGTAATCAGACTAGCTCCCTCCCAACCGCACGGCTGAGGCGGATTCAACTGCAGCACTGGGGAACGTATCGCTGGATGTGGGTGAAGACCGTGTGAACGCGCGTGTGGGCTCATACGCCGGGAGAGCGAGATCTGCTCATCCTAACCCTATGCGCCTTAAGAACGCTTCCCAATCTGGCGCGCTCAGGACAGAGGCAGGTGTGAGCGGCGAGGGCGCATCCATGAGCGTCTTCTCCCGGGACGGCATGTTTTTAGTTTAACCGGGATTTGTTTGAGCAGACCGGGGAAGAGGAAAGGCGAGTTCGGAAGTTTTGATGCATATGATCACAACCACCATGATTTTTATGATCCTCGGTGCTTCGGTTGTCATGGCGATAGCGTGTTTAATGGACATGAACGCGCTCCTGGACCGCTTTCACAACTACATCTTACCGCATTTACGAGGGGAGGACCGCGTCTGTCATTGCAACTGTGGAAGGCATCATGTTCACTACGTAATTCCGTATGACGGAGACCATTCGCTCGTGGACTCGTCTGAGAATTACTTTGTGAGTGACAGCGTGACCAAACAGGAGATGGACCTCATGCTGGGGCTGTTGCTGGGCTTCTGTATCAGCTGGCTGTTGTTGTGGCTGGATGGAGCTTTGCACTGTGCTGTGAGGGCCTGGAGAGCCAGTCGCTATTATGATACCCCTTCCTGGTCGTGGTTGCCTCAGTTCTGCAACCTCCGGGACCTCCGTAGACGCGCGCAGCTCCGGCAGCTGGAGGACTCCAGCGGAAACATGGTGCACATCAAGCAGAAGCTCTATCACAATGGTCACCCCAGCCCCCGCCACCTCTGACTTTAACGGCAGTTTCCCCAAAACTGCTCCATTACCAGCTGCTGCCTCAGAGACCCACTTTAATTGTTCCACTACATCTTTTAGACGTTCGAAAACCACTCGAGTATTTgccaaaagaagaaagaagattATCGTTGCCAATATGCTGATCTGTGTCCGCGTTCGCCGCTTTCGGCGAATGGTTtagaaagggttttttttttttctgtacaggCATTTTGTTTTCAATTGCTGAATCTAGGCATGCACTTTTAGAATGGGGGAGGATGCAAGAAATGGTTTTGTGAGACATTGGCAGTCGGTTCATGTTTTTTCCTTGCTTCCCCCCCTCCTCACCTTTTTTAGCTTTTTCATCGGAATACTTTTTGGGAGGGGGGTGATTAGCGGGTGGGGCGGGAGGGCGGAGGTTACGGTTTTGTGATGGTATAGTTAGAGATTAATGCTCTTGTAAATAGTTATACATATTGTTTTACGGGATTTAAGCAAACACGGGAGTAGGAGGTTCTTAGAGACAAGTCATGAACTGtgtaaaaagagagaaaaacataaaGAGGAAAGAATTTCGAATGCTGATATGTGATATGTGAACTTTTTGGATGGATGAAAAagagataattaaaaaaacgatCGATTAGCTTTGTTActatgtgaaataaatgaatgtattaattttatctgtaaataaaGGAGAGTGCAGGAAGGTTGAAATGAGTGGTCAGGGctctttttgctgttttgaacGTCATCCGTCATATTTGAGAGAACTGCTAGCACTTGCCTTGTCTTCCCTACACTGTGTCCAATAGCCCTTCCTGGTCTGCTTTTAAACTACTTCAAACTCAAACAAGAACAACCAGCCTGCCAGCACACAGAGCCCTGACCCaattttctcttcctctttatgTCCAGACATTGCTGTTGTGAAgataaaatgtctgttttattaaaagtgcCATTGAAGCACAACAGTGACCCCTA
>XM_043224173.1
GTATGAATGTGAAAGCGGCTTGCCACACACAGTGTAGCGATCACAGCAGATATGTAAAGTCGACCAcacatttctacaaataaaGCCTCGACGACGACTCTAAGGTCTGCTAGATGTCAGCTCCTAGACAGATATCTCAGAGAGCTAAGGCCAGCTGATCCTGGCGAGACGTTTCCAGCGGCGTCGGAACGCGAAGGAGGAGAGAGGCAGCAGCATCAGTAATCAGACTAGCTCCCTCCCAACCGCACGGCTGAGGCGGATTCAACTGCAGCACTGGGGAACGTATCGCTGGATGTGGGTGAAGACCGTGTGAACGCGCGTGTGGGCTCATACGCCGGGAGAGCGAGATCTGCTCATCCTAACCCTATGCGCCTTAAGAACGCTTCCCAATCTGGCGCGCTCAGGACAGAGGCAGGTGTGAGCGGCGAGGGCGCATCCATGAGCGTCTTCTCCCGGGACGGCATGTTTTTAGTTTAACCGGGATTTGTTTGAGCAGACCGGGGAAGAGGAAAGGCGAGTTCGGAAGTTTTGATGCATATGATCACAACCACCATGATTTTTATGATCCTCGGTGCTTCGGTTGTCATGTGGTCACAGTACCAGGTCATGTAGCGGTTGCTGTGTTCCAATACTGCTTGTCATGTCCCGGTTGACTCGAATGGTTCTTTGCAGGCGATAGCGTGTTTAATGGACATGAACGCGCTCCTGGACCGCTTTCACAACTACATCTTACCGCATTTACGAGGGGAGGACCGCGTCTGTCATTGCAACTGTGGAAGGCATCATGTTCACTACGTAATTCCGTATGACGGAGACCATTCGCTCGTGGACTCGTCTGAGAATTACTTTGTGAGTGACAGCGTGACCAAACAGGAGATGGACCTCATGCTGGGGCTGTTGCTGGGCTTCTGTATCAGCTGGCTGTTGTTGTGGCTGGATGGAGCTTTGCACTGTGCTGTGAGGGCCTGGAGAGCCAGTCGCTATTATGATACCCCTTCCTGGTCGTGGTTGCCTCAGTTCTGCAACCTCCGGGACCTCCGTAGACGCGCGCAGCTCCGGCAGCTGGAGGACTCCAGCGGAAACATGGTGCACATCAAGCAGAAGCTCTATCACAATGGTCACCCCAGCCCCCGCCACCTCTGACTTTAACGGCAGTTTCCCCAAAACTGCTCCATTACCAGCTGCTGCCTCAGAGACCCACTTTAATTGTTCCACTACATCTTTTAGACGTTCGAAAACCACTCGAGTATTTgccaaaagaagaaagaagattATCGTTGCCAATATGCTGATCTGTGTCCGCGTTCGCCGCTTTCGGCGAATGGTTtagaaagggttttttttttttctgtacaggCATTTTGTTTTCAATTGCTGAATCTAGGCATGCACTTTTAGAATGGGGGAGGATGCAAGAAATGGTTTTGTGAGACATTGGCAGTCGGTTCATGTTTTTTCCTTGCTTCCCCCCCTCCTCACCTTTTTTAGCTTTTTCATCGGAATACTTTTTGGGAGGGGGGTGATTAGCGGGTGGGGCGGGAGGGCGGAGGTTACGGTTTTGTGATGGTATAGTTAGAGATTAATGCTCTTGTAAATAGTTATACATATTGTTTTACGGGATTTAAGCAAACACGGGAGTAGGAGGTTCTTAGAGACAAGTCATGAACTGtgtaaaaagagagaaaaacataaaGAGGAAAGAATTTCGAATGCTGATATGTGATATGTGAACTTTTTGGATGGATGAAAAagagataattaaaaaaacgatCGATTAGCTTTGTTActatgtgaaataaatgaatgtattaattttatctgtaaataaaGGAGAGTGCAGGAAGGTTGAAATGAGTGGTCAGGGctctttttgctgttttgaacGTCATCCGTCATATTTGAGAGAACTGCTAGCACTTGCCTTGTCTTCCCTACACTGTGTCCAATAGCCCTTCCTGGTCTGCTTTTAAACTACTTCAAACTCAAACAAGAACAACCAGCCTGCCAGCACACAGAGCCCTGACCCaattttctcttcctctttatgTCCAGACATTGCTGTTGTGAAgataaaatgtctgttttattaaaagtgcCATTGAAGCACAACAGTGACCCCTA

Function

symbol description
tmem240a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 21. Orthologous to human TMEM240 (transmembrane protein 240).
tmem240 Predicted to be integral component of membrane. Predicted to be active in synaptic membrane. Implicated in spinocerebellar ataxia type 21.

NR:

description
PREDICTED: transmembrane protein 240-like isoform X1

GO: NA

KEGG:

id description
K24870 TMEM240; transmembrane protein 240

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224172.1 False 2035 mRNA 0.48 4 14031726 14040076
XM_043224173.1 True 2121 mRNA 0.48 4 14031726 14040078

Neighbor

gene id symbol gene type direction distance location
LOC122328469 sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007 coding downstream 2558 14025634 ~ 14029168 (-)
atp13a2 LOC107737536,LOC107673093,LOC107716130,LOC107687434 coding downstream 6200 14013247 ~ 14025526 (-)
sult1st5 LOC107591081,LOC107673112,LOC107737538 coding downstream 23991 14002436 ~ 14007735 (-)
tmem82 tmem82,LOC107737537,LOC107593928,LOC107673057,LOC107716128,LOC107580573,LOC107687464 coding downstream 29041 13999885 ~ 14002685 (-)
spen spen,LOC107737540,LOC107591084,LOC107687431,LOC107716126,LOC107593929 coding downstream 32154 13968518 ~ 13999572 (-)
ctdsp2 ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442 coding upstream 45508 14085586 ~ 14094436 (-)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920 coding upstream 60319 14100397 ~ 14104226 (-)
syt6a syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664 coding upstream 110445 14150523 ~ 14196687 (-)
avpr2aa avpr2aa,LOC107591070,LOC107737524,LOC107687451,LOC107716149,LOC107673055,LOC108436342 coding upstream 217772 14257850 ~ 14272460 (-)
idh3g idh3g,LOC107737522,LOC107591068,LOC107673097,LOC107716150,LOC107593912,LOC108425561 coding upstream 246883 14286961 ~ 14293566 (-)
G157826 NA non-coding downstream 206137 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 258418 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 284555 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 595865 13433755 ~ 13435861 (-)
G157365 NA non-coding downstream 909700 13121813 ~ 13122026 (-)
G157863 NA non-coding upstream 17759 14057837 ~ 14075937 (-)
G157874 NA non-coding upstream 101861 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 103584 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 196274 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 202503 14242581 ~ 14243955 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 749399 13280256 ~ 13282327 (-)
G157367 NA other downstream 814318 13141078 ~ 13217408 (-)
G156985 NA other downstream 2107076 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2173758 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 182731 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 286888 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 530269 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 644812 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1007074 15047152 ~ 15048344 (-)

Expression


Co-expression Network