szrd1 (szrd1,LOC107673108,LOC107716129,LOC107687433,LOC107737539,LOC107591082)


Basic Information

Item Value
gene id szrd1
gene name szrd1,LOC107673108,LOC107716129,LOC107687433,LOC107737539,LOC107591082
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14008220 ~ 14012879 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224174.1
CAATGCGCCTCACTAAACGACTCTCTGACGCTGTAGAAGGAAAATGTGCGTTAGCGTGTGGACTGAGGGAAGCCCCTAGTTAGCCAAGAGTGGAAAACATGGATGATGAGGAGGTCGCCGAGAGTTGGGAAGAGGCCGCCGATAGCGGGGAAATGGAAAGGAGACTAGAGGAAAAGCTTCGAATCAGTCAGAAAGAAAGACTTTCAAGTGGCAGTTCAAGCCGTTCTCCGATGAGGACAGCGATCGTAATCCAGGATGACTCCCTCCCCGCAGCACCCCCTCCTCAGATTCGTATTTTAAAGCGACCCTCCAGTAATGGATCTTTAGGATCATCTGTGACGCAGACTCGACCCTCCCCACAAGTAAAATCCTTAGCTCAGCGAGAGGCAGAATACGCAGAGGCCAGGAAGAGAATCCTTGGTAGTGCTACTCCTGATGACGCACCACAGGAGAGATCCAATTCAGACCGATCCCCACGCGGAAGCAGCCATACACTTTCAGAGGAAAACAGATCAGGAAACCATGTGGTTCGACAGCCAGCAGGTCCAGATGGCACACAAGGCTTTCACCACCAGCGCAGATAGGAATAGCAGCCTTTCCTGGGAGAACGGGAGAGGTGATAGTGGGTCTCCCAGAACACTGTTGaaattcaaatcatttttatcaatatttaggATGTGGgatgtttttcaaataagtatAAAACCCTCTTGAATCCAGCACGGCATGTGTGGAATGTAACTGGGGATAGAAACACGATCTCGAGGAGCGGATGGGGAACGTTCCCTGCTTTTACACTGTGATGAGGACCTCGCTTCCGGACACTGCTCACTGTGATGTCCAGCCCCTAGCcctcaaaatcaaaatgaaaatagagaGAAATGAAACCGAACTGCAGAACTATTGTCCCTTCCTCGCGTAACGCAGCCAGCCTGTCATGTCAAGCCCTCTGAAGAGACATTTGAAACGAGATAACAAGTGCTGGATGTGCTAGAACCGATAAAAGGATAGTAAGAGGCACCAGCTTCCTTCAGCAATAATTCTAGAAATATCACAAATTATTCAGACCTCCCTTGCTCACTTTTCTCCCAAGCTTTTGTATTGCTTGTGTTcgtcttttgttttaattttggttacTACTCGCTCGGTCTGCTAATTGccatatgtttttaaatgggtaagaaacAGGGGAGGGTATGTTGTGGAAACTCAAGCTGACTTTGTTCTTTATTGTTTAcggttatctttttttttctttttttcttacgtTGTTTTACTCATGGGTCTTCCTCTGACTGTCCTGATTTctacataaagtaaaaaaaaagaataaaaacaagaacTAGTAGAAAATTAAACGAGTGCAGCAAATCGCATTTTTAAACCGTTTCTATGCCTTTTTATATGATTTGAAAAGGTTCTTTTCAGACCTGTGCATTTTAAGTGAAATCCAGTGGAAAGATGACTCGTGTAAATATTTGTTGTGCTGGGAAGAACTGAAGGGAGTGAAGCCAGGGGATTTTAGCTGGCTCCCCTCGCCTCATTTCTTTATCGAATCTGCtgttggccattttcttccttttttttttttttttttttcttatgtagGAACTCAGGTTGTTGTGAGGAAATCTGAGGGAATGAATGAAGTTGTGTATCAGTGGATAGGTTTTTAACTAAATGATGGTGCAATGTAAAGCTTACATGAAGTATGGCTTCTagatcatttgaaaaacatgtATGACTGGATTACAGAATATCCTATAAGAGATTTAACGTTTATTAAAACctaagaagtgtgtgtgtgttgcaccGGTGGCTTAACAACACAACTTTAATGGAGTGTTAAGTTGACCTAGTTGCTTTGGCTCTTGCAATACAGTGTCTATACATGAAGAGCCATACTACCTTTCTTGACTGTAacttcctgctttttttttttttttttttttttttttttaatttccttccTAAAACTTCCTCTCCTGTACTATCCATAAGTGATATCTGCCTCCTGCAGTTTATGGAAATACCCTTTAATCTGATATGTCATTGTTCACCCATTGTGCTGTAACAAATCAGACCAGACAGGTTTGTCGTGGCCTGCCTGAGAACACAGAAATCTGCCTGTAAATACTTTTCAAAATGCCCAtttaataaagactttttaaataac

Function

symbol description
szrd1 Orthologous to human SZRD1 (SUZ RNA binding domain containing 1).

NR:

description
PREDICTED: SUZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224174.1 True 2176 mRNA 0.42 4 14008220 14012879

Neighbor

gene id symbol gene type direction distance location
clcnk clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941 coding upstream 96470 13905088 ~ 13911750 (+)
LOC122328345 LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944 coding upstream 176775 13824959 ~ 13831445 (+)
ttll10 LOC107591093,LOC107716116,LOC107593935,LOC107687423 coding upstream 183683 13804114 ~ 13824537 (+)
ptpn11b ptpn11b,LOC107591094,LOC107737552,LOC107593936,LOC107673095,LOC107687422,LOC107716115 coding upstream 229546 13751746 ~ 13778674 (+)
agrn agrn,LOC107591095,LOC107673061,LOC107593945,LOC107737670,LOC107716114 coding upstream 261048 13538953 ~ 13747172 (+)
mlh3 LOC107673081,LOC107591079,LOC107737666,LOC107687437 coding downstream 31904 14044783 ~ 14050528 (+)
kansl2 kansl2,LOC107687436,LOC107716132,LOC107737532,LOC107591080,LOC107673082,LOC107593923 coding downstream 37812 14050691 ~ 14056567 (+)
LOC122329331 NA coding downstream 41485 14054364 ~ 14054500 (+)
LOC122329330 NA coding downstream 43806 14056685 ~ 14056821 (+)
nckap5l LOC107737531,LOC107673071,LOC107716135,LOC107591078,LOC107687440,LOC107593921 coding downstream 45091 14057970 ~ 14085170 (+)
G157479 NA non-coding upstream 52674 13955112 ~ 13955546 (+)
G157476 LOC107591085,LOC107673100,LOC107737541,LOC107687430,LOC107593930,LOC107716125 non-coding upstream 54748 13944085 ~ 13953472 (+)
G157475 LOC107737541,LOC107591085,LOC107673100,LOC107593930,LOC107716125,LOC107687430 non-coding upstream 64301 13943589 ~ 13943919 (+)
G157474 NA non-coding upstream 65788 13942021 ~ 13942432 (+)
G157473 NA non-coding upstream 66733 13940866 ~ 13941487 (+)
G157496 NA non-coding downstream 72715 14085594 ~ 14087258 (+)
G157494 NA non-coding downstream 74702 14087581 ~ 14088519 (+)
G157521 NA non-coding downstream 134531 14147410 ~ 14147616 (+)
G157531 NA non-coding downstream 183552 14196431 ~ 14196696 (+)
LOC122328961 NA non-coding downstream 251785 14264664 ~ 14273735 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1756238 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2261650 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2275859 11730980 ~ 11732361 (+)
G156586 NA other upstream 2831187 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 2922616 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 81199 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 286822 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 590914 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 596650 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 667981 14680860 ~ 14686618 (+)

Expression


Co-expression Network