wnt1 (wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486)


Basic Information

Item Value
gene id wnt1
gene name wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15994736 ~ 16000771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224181.1
CAAGCACTCCGGGTAAAAAGGCCAGTTTAAGATGTTTTATATTCTCCTCTTACTGTAACCGTGTCGCGACAGCATCCACGCAGAGGGAAGCGAAAACACAAgcggcgcgcgcgcgcacacgcacacacacacacacacccgctgCAACGAGAAGGAATAAATCTCCTCTGCGTCTACGGAAGACTCCTAAAGGGACTGCGTTTTATATGAATTCGCTTGAATGTATCCGAGGAATCTTTGGACGAGGATTACAAAATGATATGTAATTTAAAGCGCCTATAACGGATCCTTTCTTCATCTCCTCTCCTTTATGTCGGGTTTTGCCTCCTGTATTCATTGTGCCCAATGAGAAGAATTAAGCTATCCGTCCATTCAGTTCCACTCAAaaggagggaggaaaaaaaacagagggaGATGAGAGCTGCAAATCccttttttattcatcttgTAGCGTTCAATAAGTGAACAATGTGTCGCCTATCAGTCACCGAGGGGATCAGGTCTACGGGACTGTCCCACGCGCTCAGTGCTGTGAGCAGAGCATCACTAACACACAGACTGTAAgagcagaagcagcagcagcagcagcagcggcggcggcggaggAGGCACTGGCACTGGCATCCCATCCAGGACCCTTTCTGTGACTTCTACgcttattttatgaataaacttTGACCCACGCTGTCAGTCGCACTGGAATGTGGAGTGATATCATGCGGGTACTCGCGTTGCTTCTCGCAGTCAAAGCGGCATGTGTCCTCTTGGTCTCCTCTCTCACTGGCACAGGGGCGGTGAACAACAGCGGCCGGTGGTGGGGTATTGTGAATGTGGCATCCTCGGGCAATCTCCTCACCAACTCCAAGAATGTGCAGTTGGTGTTGGACCCCAGCCTGGCGTTGCTAAGTCGTCGTCAGAGAAAACTGATCCGTCAAAACCCGGGCATCTTGCACGCCATTGCAGCAGGCCTGCATACGGCCATCAAGGAATGCAAATGGCAGTTTCGTAACCGCCGCTGGAACTGTCCGACCACCCACAGCCCCAACGTCTTTGGCAAAATTGTCAACCGAGGTTGCCGTGAGACTGCATTTGTGTTTGCCATCACAAGCGCTGGTGTTACTCACGCCGTGGCTCGGTCCTGCTCTGAGGGAGCCATTGAGTCCTGCACCTGCGACTACCGGCGCCGGGGTCCTGGAGGGCCAGACTGGCACTGGGGAGGCTGCAGCGACAATGTGGAATTTGGCAGGATGTTCGGGCGAGAGTTTGTAGATTCCAGCGAGAGGGGCAGAGACCTGCGGTATCTGACCAACCTGCACAACAATGAGGCGGGAAGAATGACAGTCGCATCAGAGATGCAACAAGAGTGCAAGTGCCATGGGATGTCTGGGTCCTGCACTGTGCGAACATGCTGGATGAGACTGCCCAGCTTCCGTGTAGTGGGAGACTTCTTGAAGGACCGTTTCGACGGGGCGTCCCGAGTCGTGTACGCCAACAAAGGCAGCAACCGCGCGTCCCATCGAGCTGACCCCCGCCACCTGGAACCAGAGAACCCAGCACATAAGCTCCCTTCTGCCAGGGACCTCGTGTATTTTGAAAAGTCCCCCAACTTCTGTTCCTACAACGGCAAAACGGGCACACACGGCACTTCGGGACGTGCCTGCAACAGTTCGTCGCCAGCGCTGGACGGTTGCGAGCTGCTGTGCTGCGGACGGGGATACAAGACTCGAATGGAGCAGGTCACAGAGAGATGCCACTGTACTTTCCACTGGTGCTGTCATGTGAGCTGCCTCAATTGCACCAGTACACAGACCGTCCATCAGTGTCTATGATCACCAAACAGAACGAATTGACAAACTGGAGGCTCCAAAACTGGGTATTGAAAGGGGCCGCTGGGGTATCTGGAGGTTATATAGGAATAAATAAGcgtgaaactgaaaaaaaaaaacataagaaaggGACTAAATAATCTGTCGGTTGAATACGCAAGTACACTCAATGTATTAACTACTGAGAAAAGTTCAAAAGTACATGTGCAAAACTCTTAGCTGATGGTAGTCCttgaaaaacacaatattttgttCATGTTACTGCAGCATAGGGATTCAAAAGTGGGTCGAGAACTACTATGCACTACGCACATGTGGACAGATTTTAAAATTCAGCATGCTTGAAGCACTAGTCCTGAGGTTCTAGTTTGTCTTCTCTTCTCCCGATCTCCGTCTCTGGTGCTCTAGGGAACATGGAAGCTAGAAAGTAGTAACTGGACACAGTTTGACAGATGTTCCTGTGGTTAGCGAACCACAAGCATGCTCTCTCATAAACCAGTGCAAAACTCTAACAAGAGGGcggttctttaaaatattttagcgttttgttttctttagctGCAGTCCTACTCGTCTCACATAAAACTGTGTGAAGTGCTTCTCAAGGGATGGGGCTTCCTTTTCCGATTACTATGTAGCGGAATCCCGAACTCAGCCCAACCTCTTGTGATTTCCCATTCGGACCTGCCACACTTCCCGTCATTGCTTTGAGTCTCCTGCCATTTTTTAataccatttattattatgtggtATACCATGTTATTGTACTGATGGAAAAGAATTGGGAAGAGAAAATTAAGATTGACCCGAGATTGACTCGATTCGGCTCTGACAGAAGCACGTTTACTATCACAGAAACTCTTTTGGGAGAGAAGAAGGCTTCTGTCGGAAGTTGCCTGCATCGATTACGCACAAGTAGATActagttttgaaaaaaaaagtgtgtaaagATAATCCTGTAAATGCCCTGCTACCTAGTTTACAGTGGACAAACAGTTCacgtttatgtttttgaaagagccACAATTATGGaaactgtattttgtatatCAGCTAACATAACCAAAATGTTGTAAATATTCTAAATAGATATgatctatatatttatactgcAACTTGCAATGTGAGAAAATGATTTAATCTGAAAGTGATGGTTAATACGCTATCATTATTTACGGAATAATTCCAGCCAGTTGTGCGCTAACTTATACAATGATAGGCCACATACATCTCAGAGACATGATTACTTTGTCAAATGCCTGATTTGCTTGTCTCTGGACACTTGTGTTTTACATGCACTGAACACCATCTTTTAATATTGTGaatgaaaagtatttattattgtatgatggcttttttttttagagaagaaATGCTgataaaaggaaatattttagCTCAGTCTAGAAGAGTTGTTTTCATATAGAGCAATAGCAcaataa
>XM_043224182.1
CAAGCACTCCGGGTAAAAAGGCCAGTTTAAGATGTTTTATATTCTCCTCTTACTGTAACCGTGTCGCGACAGCATCCACGCAGAGGGAAGCGAAAACACAAgcggcgcgcgcgcgcacacgcacacacacacacacacccgctgCAACGAGAAGGAATAAATCTCCTCTGCGTCTACGGAAGACTCCTAAAGGGACTGCGTTTTATATGAATTCGCTTGAATGTATCCGAGGAATCTTTGGACGAGGATTACAAAATGATATGTAATTTAAAGCGCCTATAACGGATCCTTTCTTCATCTCCTCTCCTTTATGTCGGGTTTTGCCTCCTGTATTCATTGTGCCCAATGAGAAGAATTAAGCTATCCGTCCATTCAGTTCCACTCAAaaggagggaggaaaaaaaacagagggaGATGAGAGCTGCAAATCccttttttattcatcttgTAGCGTTCAATAAGTGAACAATGTGTCGCCTATCAGTCACCGAGGGGATCAGGTCTACGGGACTGTCCCACGCGCTCAGTGCTGTGAGCAGAGCATCACTAACACACAGACTGTAAgagcagaagcagcagcagcagcagcagcggcggcggcggaggAGGCACTGGCACTGGCATCCCATCCAGGACCCTTTCTGTGACTTCTACgcttattttatgaataaacttTGACCCACGCTGTCAGTCGCACTGGAATGTGGAGTGGGATCTGATTTGAGTTTAAGTGGTAAACTTTGCCCTTCCAGATATCATGCGGGTACTCGCGTTGCTTCTCGCAGTCAAAGCGGCATGTGTCCTCTTGGTCTCCTCTCTCACTGGCACAGGGGCGGTGAACAACAGCGGCCGGTGGTGGGGTATTGTGAATGTGGCATCCTCGGGCAATCTCCTCACCAACTCCAAGAATGTGCAGTTGGTGTTGGACCCCAGCCTGGCGTTGCTAAGTCGTCGTCAGAGAAAACTGATCCGTCAAAACCCGGGCATCTTGCACGCCATTGCAGCAGGCCTGCATACGGCCATCAAGGAATGCAAATGGCAGTTTCGTAACCGCCGCTGGAACTGTCCGACCACCCACAGCCCCAACGTCTTTGGCAAAATTGTCAACCGAGGTTGCCGTGAGACTGCATTTGTGTTTGCCATCACAAGCGCTGGTGTTACTCACGCCGTGGCTCGGTCCTGCTCTGAGGGAGCCATTGAGTCCTGCACCTGCGACTACCGGCGCCGGGGTCCTGGAGGGCCAGACTGGCACTGGGGAGGCTGCAGCGACAATGTGGAATTTGGCAGGATGTTCGGGCGAGAGTTTGTAGATTCCAGCGAGAGGGGCAGAGACCTGCGGTATCTGACCAACCTGCACAACAATGAGGCGGGAAGAATGACAGTCGCATCAGAGATGCAACAAGAGTGCAAGTGCCATGGGATGTCTGGGTCCTGCACTGTGCGAACATGCTGGATGAGACTGCCCAGCTTCCGTGTAGTGGGAGACTTCTTGAAGGACCGTTTCGACGGGGCGTCCCGAGTCGTGTACGCCAACAAAGGCAGCAACCGCGCGTCCCATCGAGCTGACCCCCGCCACCTGGAACCAGAGAACCCAGCACATAAGCTCCCTTCTGCCAGGGACCTCGTGTATTTTGAAAAGTCCCCCAACTTCTGTTCCTACAACGGCAAAACGGGCACACACGGCACTTCGGGACGTGCCTGCAACAGTTCGTCGCCAGCGCTGGACGGTTGCGAGCTGCTGTGCTGCGGACGGGGATACAAGACTCGAATGGAGCAGGTCACAGAGAGATGCCACTGTACTTTCCACTGGTGCTGTCATGTGAGCTGCCTCAATTGCACCAGTACACAGACCGTCCATCAGTGTCTATGATCACCAAACAGAACGAATTGACAAACTGGAGGCTCCAAAACTGGGTATTGAAAGGGGCCGCTGGGGTATCTGGAGGTTATATAGGAATAAATAAGcgtgaaactgaaaaaaaaaaacataagaaaggGACTAAATAATCTGTCGGTTGAATACGCAAGTACACTCAATGTATTAACTACTGAGAAAAGTTCAAAAGTACATGTGCAAAACTCTTAGCTGATGGTAGTCCttgaaaaacacaatattttgttCATGTTACTGCAGCATAGGGATTCAAAAGTGGGTCGAGAACTACTATGCACTACGCACATGTGGACAGATTTTAAAATTCAGCATGCTTGAAGCACTAGTCCTGAGGTTCTAGTTTGTCTTCTCTTCTCCCGATCTCCGTCTCTGGTGCTCTAGGGAACATGGAAGCTAGAAAGTAGTAACTGGACACAGTTTGACAGATGTTCCTGTGGTTAGCGAACCACAAGCATGCTCTCTCATAAACCAGTGCAAAACTCTAACAAGAGGGcggttctttaaaatattttagcgttttgttttctttagctGCAGTCCTACTCGTCTCACATAAAACTGTGTGAAGTGCTTCTCAAGGGATGGGGCTTCCTTTTCCGATTACTATGTAGCGGAATCCCGAACTCAGCCCAACCTCTTGTGATTTCCCATTCGGACCTGCCACACTTCCCGTCATTGCTTTGAGTCTCCTGCCATTTTTTAataccatttattattatgtggtATACCATGTTATTGTACTGATGGAAAAGAATTGGGAAGAGAAAATTAAGATTGACCCGAGATTGACTCGATTCGGCTCTGACAGAAGCACGTTTACTATCACAGAAACTCTTTTGGGAGAGAAGAAGGCTTCTGTCGGAAGTTGCCTGCATCGATTACGCACAAGTAGATActagttttgaaaaaaaaagtgtgtaaagATAATCCTGTAAATGCCCTGCTACCTAGTTTACAGTGGACAAACAGTTCacgtttatgtttttgaaagagccACAATTATGGaaactgtattttgtatatCAGCTAACATAACCAAAATGTTGTAAATATTCTAAATAGATATgatctatatatttatactgcAACTTGCAATGTGAGAAAATGATTTAATCTGAAAGTGATGGTTAATACGCTATCATTATTTACGGAATAATTCCAGCCAGTTGTGCGCTAACTTATACAATGATAGGCCACATACATCTCAGAGACATGATTACTTTGTCAAATGCCTGATTTGCTTGTCTCTGGACACTTGTGTTTTACATGCACTGAACACCATCTTTTAATATTGTGaatgaaaagtatttattattgtatgatggcttttttttttagagaagaaATGCTgataaaaggaaatattttagCTCAGTCTAGAAGAGTTGTTTTCATATAGAGCAATAGCAcaataa

Function

symbol description
wnt1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within brain development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; midbrain hindbrain boundary neural keel; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 15 and osteoporosis. Orthologous to human WNT1 (Wnt family member 1).

NR:

description
protein Wnt-1

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035284 brain segmentation biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K03209 WNT1; wingless-type MMTV integration site family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224181.1 False 3268 mRNA 0.47 5 15994736 16000771
XM_043224182.1 True 3309 mRNA 0.47 5 15994736 16000771

Neighbor

gene id symbol gene type direction distance location
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding upstream 126635 15862039 ~ 15868101 (+)
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 258516 15733686 ~ 15736220 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 265530 15724783 ~ 15729206 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding upstream 292493 15691510 ~ 15702243 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding upstream 309688 15673052 ~ 15685048 (+)
rps26 rps26,RPS26,rps26l,LOC107563646 coding downstream 6845 16007616 ~ 16008734 (+)
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding downstream 23452 16024223 ~ 16038514 (+)
dhh dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806 coding downstream 42489 16043260 ~ 16048908 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding downstream 49794 16050565 ~ 16083002 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding downstream 129330 16130101 ~ 16188525 (+)
G158117 NA non-coding upstream 28972 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 45315 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 56865 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 112844 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 166803 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 538765 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 545070 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 548468 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 554646 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 608054 16608825 ~ 16611041 (+)
G157620 NA other upstream 690186 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 998591 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1236519 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1280181 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 1308118 14680860 ~ 14686618 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 21428 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 581199 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 620427 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 634675 16635446 ~ 16669648 (+)
G158486 NA other downstream 730575 16731346 ~ 16732884 (+)

Expression


Co-expression Network