si:rp71-17i16.5 (si:rp71-17i16.5,LOC107712701,LOC107699595,LOC107593445)


Basic Information

Item Value
gene id si:rp71-17i16.5
gene name si:rp71-17i16.5,LOC107712701,LOC107699595,LOC107593445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12038033 ~ 12045305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224192.1
GCATTAGAGGGAAACTGAGCTGTAGCTCATACACAAGCCACAGAAACTGACCTGAAACCAAACACATGCACGCTGTATAGCATCCATGGAGAACAAATGGGATGCACGCCAGCAACAGGAACCTTGCTCAGATAACAGCCTTGTATTTATTTGCAAGTTGCCAGTCAGGGAAGGTTTCCAGATCCTGGACAGCCAAGAGCCAGTTCAGATCAAACTCCCAGCGCAATGCAACGTCCACCAGCTTCGTGTACGTCTGTGTATGGTAGCACAGGAAAACAACAGACTTCCTGAGCCATTTGCACTTCTGGATCCAGAACGATACAGTCTGTTGTATCACAAGGAGGAGGAGTGGTATGAAATTTATGACGACTATCAGGTATTGAAAACTCTGGATGCACCATGGTTTCAGGGTACAGATGGTCTTCAGACTGTCTGTGTGACCGTGTTggctcaaaacaaaaacacctctAAGGAGAGAATTCACTTCCAGGGCATTCTGAACGAGCTAATTGGCTATGATTTGGACTCCTCAGACACTAATCGCTTAAGTGAGCTTGGCTATACCCGAAGGAAGTTTGCCACACCGCGAAGGGAAGAGCTAAAAAAAAGGGATGCTGTAGCTTATGCCACTGAACCGTGGATAACTTCCACAGTGCTCCCAAACAACCAGCAAGGTTACCTTCAACAAAAACTCTCAGTGACTCTTTACTGTAATAGTTCAAGCCTTTCATTCAAAGCTGACCTGACACATACCCCCAGGGATCTCCTCAAGAGCTTCTGGGCATCATTACCAAACGATGACCTGTCATTCGAAGGATGGTCAGTTGATTATGTGCTCCAAGTGTGTGGCCGGGAGGAATTCTTGACTGGAGACTTCCAGCTCTCTGACTTCATGTGGGTCAGGCACTGCCTTGAAAACATGCTGGAGCTTCATCTCTCAGTGGTTGACATCTCATCCCTTCCGGAGAACACAGGAAGTAGAGAGTACTGGCCACTGGTGGACAGTCTCACTGGTCTCTCAAGCTCCCATGAGGAGCTTTCTATCAATGGGAAGAAAGTAGAGGACATTGTGATGATTTCCCTCTGGAACTGTGAGAGAAAGTTCAGGGTTAAACTCTTAGGGTTTGACATCCCAGAACTCCCAAGTAAGGTACCGCCACTTGTCCGTGTGGAAGCCTCCATTATCTATGGTAGAAAGACAGTGTCAGCAGTTTGTTCAACATCAAAAGAGTTTGCAGACGAAGTGCTGTGGAACACCTGGCTGGAATTTGACATTCTGATCAGGGATATCCCTCACGGAGCTAAATTAGGCCTCACAATTAATGCCAGTACTGCTGAAGGCACATCAACCAAGGACACTAGGTCAAACTCCTTAAAAGTACAAGATTCCCAGAAGGGAAAAGGGCAAGTACTGTGCTTCGTAAACCTCCAGCTGATTGATCACAGATCCCTTCTTAGCCAAGGTCCATACACTCTGCACATGTGGCCTTTCCCAGAATGGGATGAGGAGGCATTCACTTACGAAGCAGAAAAGCTGTCGACCGCCACTAACCCTGATGTAGCTAAAGCAATGGCAGTTACCTTTATGCTGGATCGATACAGCTTTCCCGTTGTCTTGCCACATGGCAAGAGCACTTCTGGTAGTTGTACATCTCCTGTTTCTGACTCTTCTACACTGGACCTCTCAGGAGAGTCCAGACTCTCCTCACCATCTAATGAGGGTTCTCCCACAACCCCTTTCACAGGGACAGATTGCCTCAGAAGGCTTAAAGAACAAAGTGTCCAATATGCCTCAAATTTACCTCAGTTTCTTCGCACAGTTGACTGGATGTTGCCAACTGCGGTCCAGGATGTTCATTGGTTGCTAAGTCATTGGGTACCAGAAGATATAGAGCTGTCTGTGGCCCTTGAGCTTCTAAGTGTGGATTTTGCAGACATGAAGGTCAGACGATTGGCTGTTGAAAGATTAGACATCCTATCCAATGATGAGGTACTTAAGTACCTGCTGCAGTTGGTTCAGACCCTTAAAGTCGAACCATATCATGATAGCTGCTTGGCAAGATTCCTTCTCAAAAGAGCACTAAGGAGCAAACGGATCGGACACTTCTTTTTCTGGTATTTGCGGAGTGAGGTGGCAGGATGTCCATTTTTTCGCCAGCGTATGGCGGTCATACTTGAGGCCTATCTGTTGGGCTGTGGAGAGGTAATGCTGACTGAATTTCAGAGTCAAGTACAAGTCGTTAATTGCCTGCAAGAAGTGGCTCTAACAGTGAAGGTGCTCTACCCAGACAAAACAGACCTTCCATCAACAGCTCCTCAGAAGCTGCAGGAGTTACTGGAGGAGTGCAATTTACCCTCTGACTTCCAGGTGCCTTTCAATCCCCGTGTCAGAGCAGGAAGCATCATACTAAAAGACTGTAAAGTGATGGCCTCTAAGAAAAAGCCACTCTGGCTTGAGTTCTCCTGCGTTCAGTCAGAAGCTCCAGACTCACCTCCTGTCGGCATCATCTTTAAACAAGGAGATGACCTCCGACAGGACATGCTCATCATCCAGACTCTAAAGGTCATGGACTCAATTTGGAAAGAAAAAGGCTTAGATTTGAACCTGGTGCCCTATGGATGCATTTCTACAGGCTATAACATAGGTATGATTGAAATTGTGCGAAATGCGATCACTATTGCCTCTGTTCAGAGGAGTCAGGGAGGAGTGGCAGGAGCTTTCAAAAACAATGCCTTGTATGACTGGCTTGAGAGGAAGTGCTCATTCAAGGAAAAACACTTTCAAGCTATGGAGAAGTTTGTGAACTCATGTGCCGGCTACTGTGTAGCTACATATGTGCTTGGTATAGGAGATCGCCACAACGACAACATTATGATCACTGATCAAGGGAACTTGTTCCACATCGATTTTGGGCACATCTTGGGCAACACCAAGAGTTTCCTGGGGGTGAACAGAGAAAGGGTGCCCTTTGTCCTCACCCCTGACTTCCTGTATGTGATGGGTAGGGTGAAAGGCCGTCCCAGCCTCTACTTCCAGAGATTTAGGGACACCTGCATCAATGCCTATCTGTCCCTCCGGGCTCAGTCTCGTCTTCTTGTCACGCTCTTCTCTCTAATGCTGCTGACGGGAATCCCTGAGCTCAGCATGTCGCAGGACATGCGCTACCTGAGAACTGCACTGCAGCAAGAACAAGGAGAGGAAGAGGCTCGGAACCACTTCCTGCAGCAGATTGCCCTCTGTGAGCAGAAAGGCTGGACCGTCCAGGCCAACTGGTGGTTTCACATGATGGCAGGCATTAAATAGAAGAACCCTTCTGACAGTCATCTAAGGGGATTTCTCTACATGCTACAAAAAGATTGTAAAAAAGATTCCAAATTTTTGATTTCCCTGCTAAGGCTAAatacaaaaggagatatttgcCAGGATGTTAATGCTGACCTACATTGAAAAACACCAGAGGCTAACAATAAGCACCAAAAACGTATCACAGAATCGGTCCATTTCAAGTACCCTATactttgtgtaaataataaacaaatcaatgcaAATCTCAGATCTCATTTATACAGAAAGAAATTTGACAGAATGGGGGTGAATTTACATATTATGAacattaatgttacatttcattATGCAAATTACATGAACAAAAGTTTTGTAttcaatataaacaataaatgtttgctACTTCA

Function

symbol description
si:rp71-17i16.5 Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Predicted to be involved in cell migration; phosphatidylinositol 3-kinase signaling; and phosphatidylinositol-3-phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be part of phosphatidylinositol 3-kinase complex, class IA and phosphatidylinositol 3-kinase complex, class IB. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in autistic disorder and swine influenza. Orthologous to human PIK3CG (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma).

NR:

description
phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224192.1 True 3693 mRNA 0.46 11 12038033 12045305

Neighbor

gene id symbol gene type direction distance location
si:rp71-17i16.6 NA coding downstream 5287 12030850 ~ 12032746 (-)
lamb2l lamb2l,LOC107672045,LOC107568836,LOC107699593,LOC107593402,LOC107712713,LOC107737682 coding downstream 7803 11995970 ~ 12030230 (-)
lamb2 lamb2,LOC107737594,LOC107672036,LOC107699592,LOC107712697 coding downstream 43142 11961859 ~ 11994891 (-)
usp19 LOC107737595,LOC107671985,LOC107568839,LOC107712698,LOC107699591 coding downstream 76928 11941114 ~ 11961105 (-)
si:dkey-32e6.3 si:dkey-32e6.3,LOC107568841,LOC107737596,LOC107671987,LOC107712717,LOC107593405,LOC107699565,LOC107699564 coding downstream 97689 11936836 ~ 11940344 (-)
LOC122329006 LOC107712662,LOC107593423,LOC107699566 coding upstream 1811 12047116 ~ 12048791 (-)
taf13 taf13,LOC107671955 coding upstream 20042 12065347 ~ 12066172 (-)
znf362b znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding upstream 159028 12204333 ~ 12212104 (-)
megf6a megf6a,LOC107687467,LOC107593418,LOC107712656,LOC107671929 coding upstream 339538 12384843 ~ 12440260 (-)
her12 LOC107703051,LOC107591151,LOC107737706,LOC107593438,LOC107687468,LOC107712674 coding upstream 471617 12516922 ~ 12519193 (-)
G156972 NA non-coding downstream 186323 11793603 ~ 11851710 (-)
G156971 NA non-coding downstream 255667 11781567 ~ 11782366 (-)
G156962 NA non-coding downstream 275010 11762440 ~ 11763023 (-)
G156812 NA non-coding downstream 497988 11539623 ~ 11540045 (-)
LOC122328925 NA non-coding downstream 661345 11376177 ~ 11376688 (-)
G156978 NA non-coding upstream 9941 12055246 ~ 12061368 (-)
G156973 NA non-coding upstream 16142 12061447 ~ 12064715 (-)
G157012 NA non-coding upstream 53662 12098967 ~ 12099726 (-)
G157035 LOC107737586,LOC107672037,LOC107712704 non-coding upstream 106055 12151360 ~ 12156300 (-)
G157036 NA non-coding upstream 112097 12157402 ~ 12158314 (-)
G156985 NA other downstream 113383 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 180065 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 236401 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 291413 11741400 ~ 11746620 (-)
G157367 NA other upstream 1095773 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 1234951 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 2177504 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 2281661 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 2525042 14570347 ~ 14589622 (-)

Expression


Co-expression Network