wnt10b (wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634)


Basic Information

Item Value
gene id wnt10b
gene name wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15984905 ~ 15991565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224196.1
GGCACGATTGTGACATGCAGCTTTAAGAATATATAAAGTTTGACAGGCCTTGCTGTTTTTTCGTCGTGTTTAAAAACAAGCGCCTCAGGCGAAGTTCGCCCACCCTGACGGcgccccctcctcctcctccttctcctcagTGACATACACGCTCCCGTCCCAGGCTTCATCAAATGCTGCTTGCTCAACTCCCCGCTCCTCACACAAACAATTGAACTCATTTCCAGTTGCTCTCCAAAGCGATCCCACAGGTGTTTTAATGTCCCGTCGAGAAAAGCTTTCGGCGCAATGGAGTTACCCCACAGACAGTGTTTGGGACGAGTCCTGATTGTGACTGCAGCGCTTCTGTCACCTGCGTTCACGGTACTGGGCAATGACATCCTTGGCCTGAAGGTGGCAGGAGAGCCAGTGCTTACCCCCAACGCAGTGTGTTTACGACTGGCAGGCCTGACCAAAAAACAGatgcgtttgtgtgtgcgcaGCCCTGATGTCACAGCCTCTGCTCTGCAGGGCATTCAGGTTGCTATTCACGAATGCCAGCACCAGCTCAGAGACCAGCGCTGGAACTGCTCCTCCCTGGAGAACCATGGCAAGTTGCCCCATCAGAGTGCCATTCTCAACAGGGGTTTCCGAGAGAGTGCCTTCTCGCTGTCGCTGCTGGCGGCAGGTGTCGTGCATTCGGTGGCCTCGGCCTGCAGCCTCGGTAAGTTGCGCGGGTGTGGCTGCGAGGCTAAACGTCGCCTGGATGATGACAAAATCCGACTCAAGTTAACCCAGCTCCAGCTTCAGACTTTCCAGAGGAGCGGGGTGTCCATTGCAGGTGCAGAGAACACACCTGAGTTGGGATCGCTCCATGGCAGCCTGCCGGCCGATCTGCACTCGTCCCACCCTATCAGTCTCCTCAAGCCCCTGCCGGATGAGGTCACGCCGCTGCAGGACACCTGGGAGTGGGGAGGCTGCAGTCACGATGTGCGTCTTGGTGTACGGTTCTCCAGGGATTGGTTGGATTCCAGAGGATCTCCTCGCGATATACACGCTCGGATGCGGATTCATAATAATAGAGTGGGCAGACAGGTAGTTACTGACAACATGAGAAGAAAGTGCAAGTGTCACGGCACATCGGGCAGCTGCCAGTTCAAGACCTGCTGGTATGTATCTCCTGAATTCCGGCTCGTGGGATCACTGCTACGGGAGAAATTTCTGACCGCCATCTTCATAAACTCTCAGAACAAGAACAACGGAGTATTCAACTCTCGAACTGTTGAGAGCCCCGGCTCGGACCAGCTCAGAGGCCGTCGGCGGAACATTTCCCGTGAGTTGGTGTACTTCGAGAAGTCGCCTGACTTCTGCGACCGTGAGCCCGCAGTGGATTCGCCGGGCACACAGGGGCGCATCTGCAACAAGAGCAGCCCCAGCATGGACGGCTGCGGGTCGCTGTGCTGCGGTCGAGGGCACAACATCCTCAAACAGGCACGCAGCGAACGGTGCCACTGCCGCTTCCACTGGTGCTGCTACGTGCTTTGTGAGGAGTGCAGGGTTACAGAGTGGGTTAATGTGTGCAAGTAGCCAACACATTTTCATCCAAATCCTCATTTCTTTTTTGGACCGGGAGACAACAACCTGTGACTGCCTGTGTGTTTTGCTCTCCTACAGAGTGTCTGTTTATCCATTTCTCTCCTTCCTTCATCATCTGGGATCCATTTGCGTTGTGTTGCTGTTGTTATGTTCAAAATGCCAAGTCAGAGATTGAGGAGGAGGTGACTCatgtcatttgtctttttttcctcgCTTGGAATCTTCAGCCTCCAGAACCAAGCAAATGGCCCGAACGCCATCTGCACTTCTCCAAATAACGAGGCATAGCAGCAGGAACGAATTATTCCTGAGAAATATCGGCACTGCTACggtctacttttttttttttttttttttttcatttaaaaagtgcacttaaTGTATATTCCTTACTTTGGCAAAATGTTTTGAGAAGTTGTAATCTTTCTCGATGGTGAAATACCATCATAGTAGGGCTGAGGTTTCTGAAACACTGTATCTTGCAGTATTATGATCTTTGCCCACATTGATCACGAAGAATCAATGGCTGTGATGATTGAAAGGAACGTCCCAGTGCCTTTTATGAGGTTTCATAAGATGTCGTAGAGAAAACTCTCCTAAGTCTGGAGTGAATCTTGGCCATCGACTGAGAATGTGCCTTGTGTAGGGATCTGAGTTTAGTTGGTTTTTATGAAAACCAGGACAATTGTGAAGTTGATATGCTGTGTAACCCCATTCTAACCTTTATAGAGACAGACCAATCGGAAAACGGAGATGGATAGAGTGAAGGAAAGACTGGAGAACACTTGTGCCTCCCGTGGATTTTTtgcagctgattaaaaacagtcACATCTCATCTCATACTGCTGAACAATATTGGATGCCAGATGCCTTTGATGCAAGAATGGGAAGACATTCATACTCTCAagttaaactgtatttaaacagTTGCCATTACAATCATATTACAGTGAATCTGATGTATGcgatttttaaaacattactattGAGCAATCAGTGCTTAGGgaatcaaattaattatatgtataaattaactTTCATGTATTGTTGCATTTTGCATTCTTGagacttttgttattgtgatGTGATACAAGAAGAATTTTTGGTCAAGAAAACCTTGTGTGTAGGTTTTAGAACCAGGAGAAACCCTCTAAAACAGTGGAGGGGTCATAGATCAGCGTATTAGATATAATTCTTCTCttctggagattttttttttttttactgaatctGACCTCTCATAATGGGCAACAGGGATAGGTTTTCATAAAGAGTTTTATAAGCAGATTGAGGTATGAACCGATCTTATGGGATCAGCTGTCCAAAGTTGCACCATGTGCTGCTGAGTACTGTTTGTCCTTGTCTGTGAATCTGCAACTGTCAGAGACTGGACCACTGTGTGATTTCCTAACTAAATACAGGCGCACTTCTGATGTCTATGCTCTGTCTGACTTTTCTGAATGCACAACAATCACAAACATCTCAAGAATAAATGAGTTTTCTGTATGTTTCCTCACGAGACTCTGTAATGAGGATGCGCTGTGGCGGCTGTGGACTGAGTGAAGTGACCACCCACGGTCTGCTGGCTTTATCGAACTTACTTCTCGTGGTATTTCCTCTGGCAATAAAGATGGGAGCATAAGAGAACTAGAAAAAGAGTGGTGTGGAATGATAAAGCGCTGGATATCTGgtttgcatttctttattcCTTTATCATTTCACCCTGGAGCTGCTGCGAGAGGGAATTTCCTGTCGCTGTTTCTCCCATGTGTGAGACAGAGAAATTGGACAGCCATAGACCAAACCACCCCTCCACCTCCCCAACAAAATGCAGTGCAGCCAATCACACATACAAAGCAACATACTGACAAAATCAAGAATAATGACAACCAGACACTGCCACAGTTAAGACAGAAGGCCACAGAACTAAGACTGGGTCAGCTACTACACAGAAAGACAcatggatggttggatggataaATAGATGAATTATAGATAAACAGATATAGGTAGGTGGATAGATGAATTACAGATACATAGATATAGGTAGATGAATGGATTGGTAAATGAATAGATGGATAGGTGGATGGAGAGATGGAAGAATGGATAGATAGAAGGACGGTTGATAGATGGCTGGACGAACgaatagatggatggacggacagatagatat

Function

symbol description
wnt10b Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within midbrain-hindbrain boundary development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in obesity; split hand-foot malformation 6; and tooth agenesis. Orthologous to human WNT10B (Wnt family member 10B).

NR:

description
protein Wnt-10b-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224196.1 True 3748 mRNA 0.47 5 15984905 15991565

Neighbor

gene id symbol gene type direction distance location
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 1736 15978616 ~ 15983169 (-)
phf8 phf8,LOC107570386,LOC107745465,LOC107681973,LOC107563633,LOC107695732 coding downstream 9196 15966421 ~ 15975709 (-)
LOC122328386 LOC107745468,LOC107681975,LOC107570394,LOC107716202 coding downstream 20486 15957896 ~ 15964419 (-)
pfkma pfkma,LOC107745467,LOC107681974,LOC107563631,LOC107716200,LOC107695813,LOC103038352,LOC108276103 coding downstream 27507 15949082 ~ 15957398 (-)
LOC122328789 LOC107681987,LOC107745464,LOC107563630,LOC107695814 coding downstream 36842 15935353 ~ 15948063 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding upstream 18155 16009720 ~ 16019647 (-)
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding upstream 29752 16021317 ~ 16023370 (-)
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding upstream 92167 16083732 ~ 16099759 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding upstream 110843 16102408 ~ 16115284 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding upstream 126827 16118392 ~ 16126411 (-)
G158227 NA non-coding downstream 19142 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 171978 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 195574 15728154 ~ 15789331 (-)
G158188 NA non-coding downstream 303033 15680886 ~ 15681872 (-)
G158174 LOC107571455 non-coding downstream 377825 15603848 ~ 15607080 (-)
G158282 NA non-coding upstream 110060 16101625 ~ 16102214 (-)
G158284 NA non-coding upstream 126316 16117881 ~ 16118214 (-)
G158333 NA non-coding upstream 255451 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 425360 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 432399 16423964 ~ 16424362 (-)
LOC122329227 NA other downstream 267655 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 510515 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 683223 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 936561 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 1395283 14570347 ~ 14589622 (-)
G158231 NA other upstream 16541 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 152268 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 249245 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 363804 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1185060 17176625 ~ 17184385 (-)

Expression


Co-expression Network