ngfa (ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269)


Basic Information

Item Value
gene id ngfa
gene name ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3529533 ~ 3554513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224198.1
GGGACTCCAACTTTCAGAACAATCAATTTCCCTTAAGAGAGAGTGGGAGCAGGGCTGTAGTGGATGGCACAGGACCTGGATACTCGCATTTTGTAACGCCGAACAGGACCGGGCATTGGGGATAAACCTGTGGAGAGTTTGAGAGCTGGAATACAACCAACTTGGGGATTTTGACATTTCACAAACGTGAGAGGAGAGCAGCTGTGAGaaagCAGCAGACACACAGGCCAGTCCTGATGGCAGGCGCTTGGGGGTCAGCCTGCACTGGACTCCGGCTCTAGCAGCCCACTGGGCCCTCACTTTAACTCTAAACATTTCACAGGACGAGTGCCCATGAGGTCGTTGACGCTGGTCCTGCTCGTCCTGATCAGCGTCCAGGCTGCACTCATCATGGGAGGCCACACCCAGGCGCAGGGGCCAGCCAATCAGCATGCAGCAGCGCATCACTCACCCAAGCAGGACTCGCACTACGACGACCCGATCCCCGACGTGGACCCCAAACTCTTCAACAAGCGGCGTTACCGCTCACCTCGCGTGCTGTTCAGCGACGTGGTCCCTGCGGAAAACGACACGGGGAGCCCCAGGCGCCCGCGGGTCCGGCGGAAGGCCAACGACTTCTTACACCGCGGCGAGTACTCTGTATGCGACAGCGAAGAGCACTGGGTCGGCAACTTGACCCGAGCCACAGACTTAGCGGGCAACGACGTCACGGTGCTGCCGCACGTTCGCATCAACAACGTGGTGAAGAAGCAGATGTTCTACGAGACCACGTGCCGCGTGTCGAAGCCCGTCGGGGCCCCCAAGCCGGGGCAGGGAGCCAGTGGCGTCAAAGCGGGAACCTCTAGCTGTCGTGGGATCGACAACAAGCATTGGAACTCTTACTGCACCAACGTGCACACCTACGTGCGGGCGCTAACGTCCTACAAAAACCAGATCGCCTGGAGGTTCATCCGAATCAACGCCGCTTGCGTGTGCGTCCTCAGCCGCAACTCATGGAGGCACTGACTGATATATTGTTTCGGCCAATCCACTGCAGCCTCCTGTCGTAAGCCCCTCCCACCCGTCAGTAATAACAGCAGCCGCACTGCCAACGTCGGTGATCTGAGACTCCGCCCCTTTTCTGATCTCTCTATGACATCGCAACCCAGTCCCCTCCTACCCTACCTCACTCTGTAAATTATTGGTCGTTTAAGTTATGAGGACTGCATgacatatttatatagtttatacggtcagaatataaatataaatatgaatctatatatatatatatatatatgtgtgtgtatatatatatgtgtatatacagtatacataaaGCAAGCTTTGTTGTGTTGTTGATGctcttatttattaaacaccTCACTTCAGTATGTCAATGCAAGACTGCTTCTGTCGTAATCTTATTCAATCCCACTCACAGTTTAGCGTGAAGAGTTAATCTCGTGGGAAAACCTAACTATTTTACAAGGATGTcgattttgtatttatttgtacgAAAAAAAGCAAGCATGAAGGTCCACCTCTATACATGACCATCAGTGGGGCATAAGCAGATCGTACGAAGATTTAGAAATGAGATTGTCGTTCATAAGAATTGCAGGTTAGACAGTAATTCGCCAACGCGTAAAATAGTTACGaatttccataaggcctgcacACAGAGCTGCACTTAACCTTTCGTGGATAACATAGTCCGTGTGACTATTTTCAGTGGATCAATCATAAAGTCATGTCGCTAATACTTTTTGTGggcaaataacataaaaacaatgccTCCATTCGACAATTTCTAATTTCCGGTTTCGGTCATCGATGCACGTTCACGAGTGTCAGAATGCTGTGGCACGTACTTTTTGTGAAAACTAGCCGAATAAAACAGttctttttcttgtcttttcacacaaaaagtattctggTGGCTTCATGAAATCAAGGTTGAACCGCTGATGGCACACGGACCATTTTAACAAAGCTCTCGGAGTTCATTAAACATatcataatttgtgttctgaagatgaaggaAGATCTTACAGGTTTCAGGTCTACAGGAGTCATTACTGACtgcctttttgggtgaaccaccTTTTAAGAAACATATTTTCTGAGATTGTTACAGTAGTGCGCTgttcattttcagcttttaaaaattttccaaaAACTTTTAGAAAATCTTTGTTTTAAGATCAAAGTTTAAAACGAACCCCCAGTGCCATGCAAGTAAGAGTcgatgcttttatttaatgcaaatgacaTCCATTGCTAGCAGCATTCTCTACCGTTTAAGCTGCAGGAACGCTATCAGAAATTGTACTTGGGTTCAAATCACGTAGACTTTCGCTTTGTTTCCAAACAGGAATTTATACTTCAAAGGACCCTTTGGAATGAAGGATTTCGAAGGGTACAACTGATA

Function

symbol description
ngfa Predicted to enable growth factor activity and nerve growth factor receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; nervous system development; and positive regulation of peptidyl-serine phosphorylation. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon; dendrite; and synaptic vesicle. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; end stage renal disease; hereditary sensory and autonomic neuropathy type 5; interstitial cystitis; and neurogenic bladder. Orthologous to human NGF (nerve growth factor).

NR:

description
neurotrophin-6, partial

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224198.1 True 2413 mRNA 0.47 3 3529533 3554513

Neighbor

gene id symbol gene type direction distance location
uhrf1bp1 uhrf1bp1,LOC107697035,LOC107672988,LOC107566066,LOC107554204 coding downstream 56079 3447559 ~ 3473454 (-)
LOC122328834 anks1a coding downstream 99480 3352961 ~ 3430053 (-)
LOC122329174 NA coding downstream 230578 3288123 ~ 3298955 (-)
hdac7a LOC107704627,LOC107709222,LOC107752451 coding downstream 323122 3142283 ~ 3206411 (-)
LOC122328862 LOC107709224,LOC107558908,LOC107704618,LOC107696950 coding downstream 401311 3120862 ~ 3128222 (-)
pnpla1 LOC107696946,LOC107559157,LOC107746525 coding upstream 119952 3674465 ~ 3681959 (-)
etv7 LOC107559164,LOC107696965,LOC107746509,LOC107673543,LOC107707376,LOC107598153 coding upstream 127579 3682092 ~ 3688198 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding upstream 147093 3701606 ~ 3770863 (-)
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding upstream 327507 3882020 ~ 3893676 (-)
tnni1a tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619 coding upstream 352749 3907262 ~ 3913491 (-)
G154525 NA non-coding downstream 516352 3011419 ~ 3013181 (-)
G154519 NA non-coding downstream 520055 3006483 ~ 3009478 (-)
G154520 LOC107709225,LOC107565972 non-coding downstream 531569 2996765 ~ 2997964 (-)
G154443 NA non-coding downstream 578875 2925204 ~ 2950658 (-)
G154444 NA non-coding downstream 597296 2925010 ~ 2932237 (-)
G154663 NA non-coding upstream 77846 3632359 ~ 3633333 (-)
G154671 NA non-coding upstream 100773 3655286 ~ 3655596 (-)
G154672 NA non-coding upstream 101775 3656288 ~ 3656543 (-)
G154684 LOC107746508,LOC107696966,LOC107559163 non-coding upstream 118166 3672679 ~ 3673581 (-)
G154687 LOC107559166,LOC107559158,LOC107746523,LOC107696944,LOC107696945 non-coding upstream 138424 3692937 ~ 3693265 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 11391 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 83569 3434124 ~ 3445964 (-)
G154446 NA other downstream 572261 2925048 ~ 2957272 (-)
G154445 NA other downstream 577905 2925305 ~ 2951628 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other downstream 654775 2869618 ~ 2874758 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other upstream 340453 3894966 ~ 3905892 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 619401 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 1272965 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1899904 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1923328 5477841 ~ 5479822 (-)

Expression


Co-expression Network