sp5l (sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429)


Basic Information

Item Value
gene id sp5l
gene name sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16189431 ~ 16192678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224214.1
ATCTTTTCCCTATAAAGAGAAGATGCAATCCGACCGCCTTTGAAATGATCCTCAGGACTTATTGCGACAGGCCCTCAGTCGCACTTCAAAAGGAACAGTCCCGGTTTGAAAGCCGCTGCTTTTGAAAAGGGGACCCAGAAAACCAGGAGCGAGAGCGCGAAGTGGTCAGAGACTCTTACAACCGATAAAGGACAGGAGCAGGAAGAGAGAATCGAGGGATTATTGATGATCACTGTATTTACACTCATGCACCGGTAACCTGGTTGTGTAACGGGGTCAGTCCGTGAAGGATCTTTGCGCGCTCTGACTTTGGCACGGTTACGCACTGCGCGCCGCGCTTCACGCAGGTGTGGATATATCTTGAAGCTCCCGCACACATGGCTGCGTTAACCTTATCCAGAGCGGACAATTTCCTGCACAATTTCTTACAGgATCGTACTCCCAGCTCCTCTCCAGACAGCGGTCCTAACACCCTTTCCTTTTTGGCCACCACATGCAGTCAGGCTTGGCAGGAAGGGTCTCAGCTCCCTTACGAGGGGCCGGTGGGCTCCGCTTCCAGCATGTTTCAGCTCTGGAGCAATGACGTGGCCCCGAACTCCAGTTTGAGCGCTCACCAGATGACCTTCACCGTGCCCAAAATGCAGTTCCCCGGCCACATGCAGCCCACCCTGGGCTCGCACTCccatcatcaccaccatcaccaccatcaccaccacGAGCTCCCCCTCACCCCTCCAGCCGAGCCTCCGTCCGCCTACTCGTTCGACCTGTCTCCAGTGAAGATGCTCTCCTCCCAGGCACAGGGGAACGCGTCGTACTACACGCAGCACAACGCTGTGGGTCAGAACTTTCCTAGCTTCCTTCAGAACGCTTCAGGAAGACCTCACCTGCCAGGTGGACACGTTGAGGACGGCCAGCAGTGGTGGAGTCTCCCTCAGAGTAACAGCGCACCCTCCGGACACCCCTTCTCTCTGGGACGCCAGCTGGTTTTGGGCCACCAGCCTCAAATCGCTGCTCTTCTGCAGGGAACCTCGAAAGGTCTGCTGAGCTCAACTCGCCGCTGTCGCAGGTGCAAGTGCCCCAACTGCCAGTCCACGGGAAACGGAGGTGCTGCTCTGGAGTTCGGGAAGAAAAGACTACACATTTGTCACATTCCGGATTGTGGCAAGGTCTACAAAAAAACCTCTCACCTGAAGGCTCACCTGCGCTGGCATGCCGGCGAGCGGCCCTTCATCTGCAACTGGCTCTTCTGCGGAAAGAGCTTCACCCGCTCAGACGAGCTGCAGAGGCATCTTCGCAcgcacaccggagagaaacgcTTCGGCTGTCAGCAGTGTGGGAAAAGGTTTATGCGGAGCGATCACCTCTCCAAGCATGTGAAGACCCACCAGAGCAGGAAGAGCCGGTCCAGTCAGCCTTCTCAAAGTGGGACCGATTCACTGCTAAGCAACATTAAGAGAGAGTAAGGGATGCTGAATGCAAAAGAACTTGCTGTAGTATCAGGAATGAATCCAGAGACCCTTTGAGGCTATTTGCGTCATCTAAAATCTTTTATAGAAAAGGTgcaattgttaaaaaatacaatatatattccAAAAAGCAATAGCAGCATGGGCCTGTTTTGAAAACACTGGAGCAAGTGAACACCATGCCGCACCGAAATTGATCTTTGAGACTTTAAAGAGAATTTAGGTCACAGTGGACGTGAAAGAGCAGAAGAAAGTGACATTTTTTACGGCTCTGGATGCAAAGACTTTTTATGACCAAATTTGCCcttgcacatttatttaaagataattcAATTCCACTAACAGCACAATCAAAAGTATTTGTCACATggtgaaaatgtcatttgtttacattttgttgttgctttctCTAGTTTTTAGGGAAAATTGATGCcttatattaaaatgagaagCTCTGGTTGCGAAATTTGCCAACATTATTCCCTGACAGATCACTGTAGGTCTTGTTTCCTTGCAGAGAATGGCACTGCTATAAATCTATTTCACTCTTAATCTAAATAGTTTCAAGACATGAACcaaatgtatataatgtttatatagcGCACAGTTCTATAAAGACCAgcatgtgaaatattaataaacgcaAATAACTGTGCAAATCGAAATCTCGTGCTTCGTTTTGTTCATTCCTTCGCAGCATTTAATGCCTTGTCAAGCGCACTTAGTGTATTTTAACAGATGTGTGAAGTTCAGCAAATGGCTAATGTTAAATCTAACACTGCATGTTGGACCtcagcattttacatttattctaatGTTAATGTACTGGCATTCAGGATGCTAATTTAAGGTGGCCATTGTTTCCGAGGTGTCAAGGAAGCACTTAAAGCAAAGACAAATGACTGGAGAGTCTTCAGACACTTTACAGTTGTCAGTAAATAGTCGGGCCATTGATGAGAACAGTGGTCTGACCTTCTCCCGTCAAGTTCACAGTCATGTTGTCTCGTAATGGCCGGTGTAAATAACAGACAACCGTCACTGAGGATAGCGCTCTACTGGAGCTCACTGTGAATGGACCCCCGGCTGTTTATATCCCACTGACTGTGACAGAAGTCGCTTTGATTTGGCACCTTTGTGATAGTGAATGCTCACAAACCCTCTTCCCCCATCTGTGTGTGCAAATGAACCCTTTGCTGCTCAAGAATGCCTAGAATGTGACTTAAACAGAGACAAATTA

Function

symbol description
sp5l Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including mesoderm formation; notochord development; and post-anal tail morphogenesis. Is expressed in several structures, including forerunner cell group; mesoderm; nervous system; neural plate; and notochord. Orthologous to human SP5 (Sp5 transcription factor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224214.1 True 2706 mRNA 0.48 2 16189431 16192678

Neighbor

gene id symbol gene type direction distance location
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding downstream 63020 16118392 ~ 16126411 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding downstream 74147 16102408 ~ 16115284 (-)
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding downstream 89672 16083732 ~ 16099759 (-)
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding downstream 166061 16021317 ~ 16023370 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding downstream 169784 16009720 ~ 16019647 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding upstream 30131 16222809 ~ 16234574 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding upstream 66397 16259075 ~ 16331672 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 148768 16341446 ~ 16344687 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding upstream 167011 16359689 ~ 16376808 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding upstream 207127 16399805 ~ 16401705 (-)
G158284 NA non-coding downstream 71217 16117881 ~ 16118214 (-)
G158282 NA non-coding downstream 87217 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 223668 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 376504 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 400100 15728154 ~ 15789331 (-)
G158333 NA non-coding upstream 54338 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 224247 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 231286 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 240283 16432961 ~ 16433629 (-)
G158388 NA non-coding upstream 251128 16443806 ~ 16444037 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 19597 16143833 ~ 16169834 (-)
G158231 NA other downstream 180516 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 472181 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 715041 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 887749 14684890 ~ 15301682 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 48132 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 162691 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 983947 17176625 ~ 17184385 (-)
G158609 NA other upstream 1146589 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 1221025 17413703 ~ 17422517 (-)

Expression


Co-expression Network