tfip11 (tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308)


Basic Information

Item Value
gene id tfip11
gene name tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11062357 ~ 11068609 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224233.1
GTTCAGGGCACAGGATCCAAGATGGCTGTAAGAGAGGGCTTCTGACCTCCGCGTCGCTCTGATGTCACAGCTCTGCTTCCGGCCTCAGCAGGAAGTTGCTTCTGGATACGCTCTTGCTGATAGCGAGAATCCACATTTACAgCACAGAGATGTCTATGTCCCATTTGTATGGGCGTAGAGGtaatgaggaggaggaggatggtgTGGAAATTGAGAAGTTTGAGGTGACTGAGTGGGACTTGGCCAATGAATTCAACCCGGACAGACGCAGATACAGACAGACTAAAGAAGAAGCGACTTATGGGATTTGGGCAGAGCATGACTCTGATGATGAGCGGCCCAGCTTTGGGGGGAAAAGATCCAAAGACTATTCAGCTCCCGTGAACTTTGTGAGTGCTGGCCTACGAAAGACTGCAGCTGAAGAGAAAGCAGAGCAGGAGGGTTCAGATGACTCAAATGATAGTGGAGAAGCACCTCCTCCACCCCGCGCTGCTGCTCCCAAAAAACTCCAAACgGGTGGAAGCTTTAAGACGTCCCAAAGGTTTGCAGGTGGTATCAGAACAGGGCAGGACATCGGATCATGGGAGAAACACACACGAGGCATCGGTCAAAAACTTCTGCAAAAGATGGGCTACGTTCCAGGAAAAGGATTGGGCAAAAATGCTCAAGGTATTGTGAACCCGATTGAGGCGAAAGTGCGGAAGGGCAAAGGAGCGGTAGGAGCGTATGGCAATGAGAGGACCCAGCAGTCCCTGCAGGATTTCCCTGTTGTAGActctgaggaggaggaagagaaaGAGTTTCAGAGGGAGTTGGGGCAATGGCGTAAAGAACCAGGAACGGCAAAGAAGAAGCCTAAATATTCTTACAAGACTGTGGAAGAACTTAAAGCTCATGGCAAACTGACCAACAGGAGCATGAGCAGACCTGCTGGAGAACTGGCTCAGGTTAAGGTGATCGATATGACAGGCAGAGAGCAGAAGGTGTATCACAGTTACAGTCACATGAGTCAGAAGCACAGTGTTCCCGAGGAGGCCCCTTTGAGTGTGAGCACACGTGAACAGAAGACCTCTGGCTTCTCCTTACCGGAGCTGGAACACAACCTCAAACTGCTCATTGAGCTGACAGAGCAAGACATCCTACAGAGTGCAAGACGTCTACAGCACGAAAAGGACACTGTGGTGACCCTGACCCACGAGAGCGACGCACTGCAGGTCAGGTTGGCAGAGGAGGAACAGTCTGTTGGTCGGCTGGAGCAGGTGATGAACCTGGTGGATCGTTTCGAAGCAGGCGATAAAGAGGGAACCCCTGCTCTCAGCCTTCAGGAGTGCGCTAAGATCTTTCAACAGCTGCAGACGGAGTTCTATCAGGAGTATAAAACCTTGGGTTTGGGAGACCTAGCTGTGTCTGTGGTGCATCCTTTATTGAAAGAGAGACTTCGCAGTTGGGATCCACTGAagGACTGTTCAGATGGTTTAGAAGAAGTCGGTCAGTGGAGAGCCATTCTTGAAAGCTCACAATCTCTTCACGGTGGCCCAGACACTTCTAACATGGACCCCTATCACAGgTTAATATGGGAAGTGTGGGTTCCAGTCATGAGGAGCTGTGTGTCTCAGTGGCAGCCCAGAATCGTGGGGCCAATGGTGGACTGTGTGGAGTGCTGGGCTCCTGTATTGCCTCTGTGGATTCTGGATCATGTTTTGGAACAGCTTATTTTCCCACGACTACAAAGAGAGGTGGACAGTTGGAACCCACTGACAGACACGGTGCCGATCCATTCATGGATTCATCCCTGGTTGCCTCTGATGCAAACCCGTCTCGAGCCGCTGTACGCACCAATCCGCAGTAAACTAGCCCATGCCCTGCAGCGCTGGCACCCCAGCGACTCCTCTGCCAGACTCATTCTGCAACCCTGGAAAGATGTCTTCACACCCGGTGCATGGGAGGCCTTCATGGTCAAAAATATTGTTCCAAAACTAGCTTTGTGTTTAGGAGAGCTGGTGGTGAATCCTCATCAGCAAGTACTGGAGCCATTCAACTGGGTGATGGACTGGGAAGGCATGCTCTCTGTCTCCACCATGGTTGGACTGCTGGATAAgaattttttccccaaatggCTACAGGTGTTGTGTTCCTGGCTCAGTAACAACCCAAACTACGAGGAGATCACCAAATGGTATCTGGGCTGGAAAAGTTTGCTCTCAGACAACCTGCTCAGTCACCCACTGgtcaaagaaaaactgaatgaGGCTCTTGACATCATGAATCGTGCTGTTGCCTCTGGACTAGGTGGATATATGCAACCAGGAGCAAGAGAGAATATTGCGTATCTGATTCAGACGGAGAGAAGGAAAGATTTCCAGTGCGAGCCTCAGCCTGAGCGTCGTGACATGGACAGTTCTGTGACACGGCCACCAGGCACCGCAGCGGCACCAACATCTGTACCCACCAACTTTAAAGACCTAGTCCAGGCCAAAGCTGAGGAGAACGGCATCGTCTTCATGCCACTGGTGGCTAAACGGCATATGGGCAAACAGTTGTTCACATTTGGCAGAATAGTCATCTACATTGAGCGTGGAGTGGTCTTTGTCCAAGGCGAGAAAACCTGGGTTCCTACATCACTACAGAGTCTGATTGACATGGCCAAGTGAGATTGATGATCAGTCACAGAAGCTGTTTAATTGTTGCCGTCTAGTCTGCTTTCATGCAGTTCATAACGCTGTATCAGACTTGTCTGTCGATGTTTTTTATATTGCTGAAGAACTGGTTTTGAATAAATGAGTCTTTAAATTAA

Function

symbol description
tfip11 Predicted to enable nucleic acid binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type post-mRNA release spliceosomal complex. Orthologous to human TFIP11 (tuftelin interacting protein 11).

NR:

description
tuftelin-interacting protein 11

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K13103 TFIP11; tuftelin-interacting protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224233.1 True 2794 mRNA 0.50 14 11062357 11068609

Neighbor

gene id symbol gene type direction distance location
bhlhe23 bhlhe23,LOC107737661,LOC107560898,LOC107671927,LOC107657004,LOC107756976,LOC107563681 coding downstream 74945 10985385 ~ 10987412 (-)
dnajc5ab LOC107747984,LOC107672029,LOC107563663,LOC107719908,LOC107657050,LOC107560895 coding downstream 127450 10923126 ~ 10934907 (-)
trim101 LOC107719918,LOC107671958,LOC107560876,LOC107656995,LOC107747989 coding downstream 139277 10915631 ~ 10923080 (-)
tpd52l2b tpd52l2,tpd52l2b,LOC107672016,LOC107719909 coding downstream 148154 10903880 ~ 10914203 (-)
ppdpfb ppdpfb,ppdpf,LOC107719911,LOC107560892,LOC107657053,LOC107747982,LOC107563664 coding downstream 160571 10899826 ~ 10901786 (-)
pm20d1.2 pm20d1.2,LOC107672051,LOC107560903,LOC107737652,LOC107560862 coding upstream 38332 11106941 ~ 11111646 (-)
pm20d1.1 pm20d1.1,LOC107737726,LOC107671971,LOC107656991,LOC107560862,LOC107672051 coding upstream 44400 11113009 ~ 11117428 (-)
lemd1 LOC107741312,LOC107657040,LOC107737650,LOC107563651,LOC107672064 coding upstream 49073 11117682 ~ 11131520 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding upstream 80259 11148868 ~ 11154450 (-)
tafa1a fam19a1a,fam19a1,LOC107657002,LOC107560881,LOC107563677,LOC107741340,LOC108436303,LOC108275576 coding upstream 107338 11175947 ~ 11213276 (-)
LOC122329093 NA non-coding downstream 4362 11050293 ~ 11057995 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding downstream 9062 11047145 ~ 11053295 (-)
G156715 NA non-coding downstream 26862 11033742 ~ 11035495 (-)
G156538 NA non-coding downstream 102511 10959635 ~ 10959846 (-)
LOC122329022 NA non-coding downstream 179705 10880591 ~ 10882652 (-)
G156726 LOC107737655 non-coding upstream 2801 11071410 ~ 11075961 (-)
G156759 NA non-coding upstream 94055 11162664 ~ 11163019 (-)
G156762 NA non-coding upstream 173991 11242600 ~ 11244820 (-)
G156785 NA non-coding upstream 284550 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 307568 11376177 ~ 11376688 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 384207 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 676390 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 694988 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 702571 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 1228675 9831809 ~ 9833682 (-)
G156746 NA other upstream 32135 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 672791 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 676653 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 695100 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 731313 11799922 ~ 11801632 (-)

Expression


Co-expression Network