prim1 (prim1,LOC107741309,LOC107671973)


Basic Information

Item Value
gene id prim1
gene name prim1,LOC107741309,LOC107671973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11058159 ~ 11062247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224234.1
AAGAACCAAGCGCGTCATTTCCTATTTACGTAAATTTTCCCGCGCTGGTTGTAGAGTCAGCTGTCATTGAGAATAAACACTGCACAGCTTAAGTATGTCAAGCTCTGATTATGATACAGCTTGTTTGCCCGACTTGTTGCCGATTTATTACCGCAGACTGTTTCCGTTTTCACAGTACTATCGCTGGTTAAGTTATGGCGGTGTGTCTAAAAACTACTTCCAGAACCGTGAGTTTTCCTTCACCCTAAAAGATGACATTTATGTGAGATATCAGTCCTTCACTACTCAGAACGAGTTGGAGAAAGAGATGCAGAAAATGGTTCCCTACAAGATTGATATCGGAGCAGTCTACAGCCACAGGCCCAGTCAACATAACGCGGTGAAGTCTGGAACCTTCCAGGCCCTGGAGAAGGAGCTGGTGTTTGACATTGACATGACCGACTACGATGACGTCAGATATTGCTGCAGTGCTGCCGATATCTGCTCAAAGTGCTGGACTCTGATGACCATTGCTATCCGTATTCTGGACCGGGCACTTCGGGATGACTTTGGATTCCACCATCTCCTCTGGGTGTACTCGGGCCGGAGAGGGGTGCATTGTTGGGTTTGTGATGATGCTGCTAGGAAGCTCTCGGTGGCGGCGCGGTCTGCCGTGGCAGAGTACCTCAGTTTAATCAAGGGTGGCGAGGAGACCGTTAGAAAAGTTGTGTTGTCAGATCCAATCCATCCTTTCATCAAtcattctCTGTCTGTGGTGGAGCACTATTTCCAACAATATGCCATTGTGGACCAGGACATATTGGGCAGCAAGGAGAGTATAGACAAAGTGCTCGCTCTGCTGCCTGAAGATATCAGAAAGGAGCTGACAGTCTTTAATAAGGATGTAAAGGACCCAGTGAAGCGATGGGACAAACTCTGCGATCTGGTTGAACGTAAAAAGTCAAATAGTAAGAAGGGTCAGCACTTCGATAAGGAGATCATGCTGCAGTACTGTTACCCGCGCTTGGATGTCAACGTCAGTAAAGGAGTCAACCACTTACTAAAGAGCCCCTTCAGCGTACACCCCAAGACAGGTCGAATCTCAGTTCCAATAGATCTGAAAGAACTGAACACGTTTGATCCTTTTGAGGTCCCTACGATCAGTCTGATCTGTGAGGAGCTGGAGAAGCCAAGAGAAGATGAGGCGGAGGAAGATGACACAAAGGACAAGGAGAATGAACAAGAAGCTGGAGAACGACGCAGAATCAGAGaCTACAAGCGGACCAGCCTGGCCAAGTacgtgaaggtctttgatcgGTTTTTGGAGGCAATGGCTCGGTCTCGGAAAGGAGAGATGCTGCAGAAGAGTGatcTTCAGAAGGacttctaagaaaaaaaaaagaactgtaaaATAGCCGTTTCagaatgcatttacatgtttatttgcTGACTCTCTGCTTCTGAAGATACAGACACTTTCACATACAGAGTGAATCATTCCATTGGACGATCAGTCAAGTTGTCATTAAGTGATACTGTTTCTTTACTTTTCTAATAGAAATAGGTTTTCTcttatgttgtgttttgtaaATCAAACCTATTTCATTTTTCTaccagttaaataaaataacttgtaCAAATCTGTTA

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

NR:

description
DNA primase small subunit

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224234.1 True 1626 mRNA 0.45 13 11058159 11062247

Neighbor

gene id symbol gene type direction distance location
rnd1a rnd1a,LOC107657046,LOC107737660,LOC107563659,LOC107560900,LOC107672025,LOC103027302,LOC108435239 coding upstream 8503 11041080 ~ 11049656 (+)
slc17a9b slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106600547 coding upstream 109259 10939395 ~ 10948900 (+)
gid8b gid8b,gid8,LOC107560896,LOC108266002,LOC101169608,LOC108276161,LOC108231957,LOC106566597 coding upstream 119586 10934963 ~ 10938573 (+)
trnae-cuc_40 NA coding upstream 156019 10902069 ~ 10902140 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding upstream 165614 10884466 ~ 10892545 (+)
naca naca,LOC107737655,LOC107671995,LOC107657042,LOC107563656 coding downstream 6239 11068486 ~ 11075931 (+)
LOC122329336 NA coding downstream 12844 11075091 ~ 11075166 (+)
LOC122329335 NA coding downstream 13415 11075662 ~ 11075737 (+)
nfascb nfascb,LOC107672057,LOC107737654,LOC107741310,LOC107657041,LOC107560902 coding downstream 23619 11085866 ~ 11098542 (+)
LOC122329135 LOC107737653,LOC107671959 coding downstream 37825 11100072 ~ 11105175 (+)
G156551 NA non-coding upstream 22664 11033791 ~ 11035495 (+)
G156496 NA non-coding upstream 156336 10829167 ~ 10901823 (+)
G156432 NA non-coding upstream 329929 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 330995 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 355066 10702729 ~ 10703093 (+)
G156572 NA non-coding downstream 61845 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 86616 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 148794 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 156788 11219035 ~ 11313603 (+)
G156599 NA non-coding downstream 183304 11245551 ~ 11311487 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 134171 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 357264 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 485913 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 503439 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 539408 10514979 ~ 10518751 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 14907 11077154 ~ 11085604 (+)
G156586 NA other downstream 112174 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 635167 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 668733 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 1183946 12246193 ~ 12251982 (+)

Expression


Co-expression Network