LOC122328511 (LOC107690110,LOC107567958,LOC107724207,LOC107578799)


Basic Information

Item Value
gene id LOC122328511
gene name LOC107690110,LOC107567958,LOC107724207,LOC107578799
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1482712 ~ 1494028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224235.1
TGCAATATTTGTATATAGCCTAGTATAACATTTGAGGTTGAGGCATCCTGTCAGAAAGAGACAGTTTGACACCATGCAGAATCTCCAAAAACTCTAGGATGGATCTTCTTAAATGGATCTTCAATCTTCTAATGGTCCTGGTAATCATTACATCCCTGTATTTGCACTACTGTGGAAAACATGAGATGATGCGAAGTGAAATGACAGACAGATTTAAATTACTGAACTGCATGAAACTTCGTCAAAGGTTCTCCAACATCACTCTAGCAAAGAGTATTGATGTGATGAATGTCACTAGGTATCTCTCAGCATTAATGAGCTGTCCACATGTGTCCAATAAGACCAAAAAGGATCTAAACAGaTTAATGCTGCGTTTGTGTTGTAATGCCACGGATTCATTATACCTGACAAAGAAGAACACCGCTTTAAATCAAAGTATTACATATGAGACCTCAAACAGGGTGTACAAAGTGGAAGCTGCACTTCACAAAATTCTACCCGAGGACTTTCTATGGAGCAGCCGTGGTCATCTGGGCCGATGTGCTGTGGTGGGCAATGGAGGgattctgaagaacagcagttGTGGAAGAGAGATTGACAGTGCAGACTTCGTCATCAGgTTGAACTTGGCTCCCATTAATGACAGTGATGTTGGGCTGAAGTCTGATCTTGTGACCGTCAATCCCAGTCAGCTCTCTGCAGAAAACATGGCTGCGAATCCAGGTCCGTTGGTGGGGCGCGTGAGCGTGTATGGAAATGCGCCTCTGATAATTCCAGCCTTCGCATACACAGTGTGCACTGCAGTGTCAATTAAAACCCTCCAGGTTCTCCAGACGCTCAGACCTCAGCAGCCCGTGGTGTTCTTTAGTCCCTACTACCTCAAGTCATTGGACCGTTTCtggaagaggaaggggctgAAAGCAAAACGCCTCTCCACAGgtttcatgttagttaatacggCTCTAgagctgtgtgatgatgtccgTTTGTATGGATTCTGGCCATTTGACGTCAATCTAAAGCAGCAGATACTTCAACACCATTATTACGACAACAAACCACCCAATCTGCACATACATGCCATGCCAGAGGAGTTTTTCCAATTGTTACAGCTTCACAGCCAGGGGGCGCTAACACTGCAACTACAACCCTGCTTAtaactccctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctcatgcacacATTTGTGGTTTTCGGGGAGTCTCCATAGGTGgcattgtttttatactgtacaagcTTACTTCTTACAGTAAAGTACTGGCATTTTTTTAACCATACGTCCGTTGTGATATCCATGTCATTATACTcatttgtgtcctcataaaccacaaatgcaagcacacacacattctcataGGGCAcctgttaaataattaacatggtTTAAGTTCCCGCTGTTCTCGTAGAATACCTCTAGACGAATTCTCGATCTCATAGAGCAAGAAGACACACGAGACGTATATTTCCTTACTCCAAAAGTTTATTCCAGAATACAGTGATTTATATGAGCGTTTTCAAAGGGGAGTTTTACCCCTctagccaatgaaacaaaagatgacatatGTTGTATTCATGCCAAAAGATATGTTCTTATATAAGATAAAggaaattatgaacatataaGAAACACTGTTGGACACTGAAAAACACTTCTTCTTGTGaagtatcaaaagtgtagagCAAACTCATTCAACCCACGACTGAACCCTTCTAACATGTTAGAaggatattatatataatatatactacaGAACACTAGGGGGAGATATAAAGAAAATCACGCCTAGGAGGAGGGAAAAAGATCAGACAGAAAGAGTCTAAGGGAGAGTGTGTTCAAATCTAACAGCACCTTTTTCTGATGCTTGGACAgaaatcttttaatattttctattttgcatttgttttctgcTTTACTTGAAAAGCGCTCCGACCCGATGGCTACGCAAACAGAATAATGTCATTAGAGTGCAAAGTCATCAAAGTATATCCCTGTGTATTGAGGAAGAGGCTGAACTGTGAAAGTTACGAAATGAAATCAGCGGTTTTGTTTCGGATTTAGCTTCACTCAAATGGGAAATTTCCGATATACTCATTAAACCTGTTTGCTATTCACATTTCAAAAAGAATGATCGGTAAGTCTGGATTTGAATGTTCACACCGACTTCCAAACTAAAAATCAAACCACtagctttaaaaacacttataatATCACTGATAAAAATAGAGTAACAAGATTATGTAAATTCTTGAATGCCTTGTGTGTTCAATAGAAACCAACAGCCTTAAATAACAGTGAAATCATCCATGTGATGTTTTTCTTACACTTTTATATCTTATCTACCTTCTTATCTgtgcaaacaatattttgtcATGATGGTCCCTTACGAGCATTCTGCTGACAATAAGTAATTTTGCATCTACATCTAACATCTACATCTTTCATTATAAGTAGACTGTGTAATTATTATCTgataactctttattgtgatgatctattGTGATGGTCACCTTTATTAAGAATCATATGATGCTTCTTGATGTCTGTGTCTAAAAATACTAGTTTTCAAAGACTCTTATGCACGATGTGCTCTAGATGATGAACTATTGTAACATAACTATAAGAGCAGCTCTCTGCTTACATGCTTTAGTTCCAGAAGATCGATTACTCAAAATCTAGACATATGAAGAAAACAAAGTTATTTTGGGCATAATCAAGTTAATGCCTTGACTTATTCATGTGAAAGTAGCTGACAACTGCTTACTATGCAGCACTGAGTTCTCTGCGTCTCAACAGTACACACGACATTATGGAGAGAGATCAAATACAAAAAGTCAAgggtcaagagcccaactaaagcTATCACTGATCCCCATGATGGTAAAACATCACCATCTGATCCTCCGTAATTGTTAAAAACTGCAGGTGTTCATCTGATGCTCCATAATTGTCAAGATCCGCAGGTGTTCATCACTGATGCACAATCATCACTTAATGATCGTTGAGGACTTGACTCTAGACTTGCCTTTgtcttgaaaataataaatgtgttcaaCTTTGCAGTGCTGACAAATACACCGATCGGTGTCCGCAGCGCCGCTTTAAGTCAAACACAACTTTTGGTTTCTGGTCTGGTGaaatcagctgctgagttcatgGCTGGAATCAACATGTGGCAGGACTCTACATCTCTGGAGCTCCGTTGCTGAAGAGCATTGAACCGTTTTCTCCCGTATTCTACTGTACAGATGtcaatttactttttcttcAACCTGAGGTTTACTCATTGCACTTTTTGGTGTGAAAGGTATATGAGTAACGTTGCATTGTGACCGCTATTTTGAATTCTGTCGCGTCGCTGTGAAAGTGACGTGATGACTTGAGCTTGAGTTGAAAGCAAAGTAAAGATGCTAGATGTTCGCTAATATGATGTTCCCAGATACCACAGTatatttgctataaatatacttttttagaGAGTAAATAGTAGCGaataacacaatattgtaatgcattacttttaaaatttagaatttattctaacccta

Function

NR:

description
PREDICTED: alpha-2,8-sialyltransferase 8E-like

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224235.1 True 3635 mRNA 0.39 8 1482712 1494028

Neighbor

gene id symbol gene type direction distance location
LOC122329157 NA coding downstream 80922 1395429 ~ 1401790 (-)
LOC122328434 NA coding downstream 111238 1362002 ~ 1371474 (-)
LOC122329156 nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952 coding downstream 138146 1282121 ~ 1344566 (-)
b4galt5 b4galt5,LOC107736963,LOC107684873,LOC107656676,LOC107566184,LOC107725076 coding downstream 298046 1165023 ~ 1184666 (-)
zgc:113278 zgc:113278,LOC107714267,LOC107555798,LOC107736961,LOC107656677,LOC107684897,LOC108427771,LOC105906438,LOC107564801 coding downstream 387274 1087192 ~ 1095438 (-)
LOC122329158 NA coding upstream 60234 1554262 ~ 1557987 (-)
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 112249 1606277 ~ 1608631 (-)
LOC122329161 LOC107678070,LOC107571224,LOC107705859 coding upstream 116241 1610269 ~ 1613006 (-)
LOC122329162 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 123559 1617587 ~ 1619011 (-)
spata2 spata2,LOC107703616,LOC107562628,LOC107713568,LOC107680738 coding upstream 151959 1645987 ~ 1651285 (-)
LOC122328606 NA non-coding downstream 62258 1419857 ~ 1420454 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding downstream 89577 1389362 ~ 1393135 (-)
G153967 NA non-coding downstream 275125 1206700 ~ 1207587 (-)
G153966 NA non-coding downstream 276110 1205479 ~ 1206602 (-)
LOC122328476 NA non-coding downstream 519135 960274 ~ 963577 (-)
LOC122328609 NA non-coding upstream 99584 1593612 ~ 1594209 (-)
LOC122328398 LOC107678070 non-coding upstream 110584 1604612 ~ 1606221 (-)
LOC122328412 LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794 non-coding upstream 115132 1609160 ~ 1610175 (-)
LOC122328435 LOC107738794,LOC107571225,LOC107678080,LOC107678070 non-coding upstream 119180 1613208 ~ 1614708 (-)
LOC122328558 LOC107738794 non-coding upstream 122458 1616486 ~ 1617477 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 417938 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 600528 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 696833 779085 ~ 785879 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 13670 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 608682 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1275454 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1293268 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1375590 2869618 ~ 2874758 (-)

Expression


Co-expression Network