LOC122328520 (LOC107591107,LOC107703065,LOC107737567,LOC107717766,LOC107593370)


Basic Information

Item Value
gene id LOC122328520
gene name LOC107591107,LOC107703065,LOC107737567,LOC107717766,LOC107593370
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12911070 ~ 12930813 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224260.1
attttttttctcctcctctctgcttGGTGTAGTCTGTGCCTGTCGGATAGAGCAGACCTCAGACATGGTGTAGGATATCAGGAAAGGAACAAGCGATTGAAGTTGAGACGAGGCCTGTTGAGGCTGGAAGGGAGTGTGAAGGATTGACAGTAACCGTGGATCGGGCACAGGCAGGCGGAGGCCCCCCATGGAGAAGGAGCAGGGAAGCGTGGCCCCTAGTGCCAACGTCACCATCCCCAGCACCACCTCAGCCTCCACCGGCAGCAGCACTACAACAAACTCCTGCAGCAGACAGCAGGCTGTGCCTCAGATATCAGTATATGGAGGaatcacagacagacagactgttCAGGTCATCCAGCAGGCCTTAAACAGGCAGCCCAGCACAGCGGCAGCTCAGTATCTACAGCAGATGTATGCAGCGCAACAACAACACCTCATGCTACAGACCGCAGCACTACAGCAACAGCACCTGAGCCTGGCCGCGGTGCAGCAGGCTAGTATAGTGGCAGGAAGACAAAGCTGTAGTCAGAATGGCACTACATCCCAGCAGACCGTGGCCTCCCAAACCACTATAAACCTCGCCACATCCCCAGCGGCAGCCCATTTGATCAGTCGAGCCCAGAGCGGGAGCTCTGTTCCAGTCTGCATTGCCCAGCAGGCCGTGCTTCTGGGAAACTCCTCCACACCCACACTCACCGCCAGCCAAGCACAGATGTATTTACGAGCTCAGATGGCACAGCAAACCAATCTTGTGCAAGTAGCGAGGAGCCTAGGACGAGCCGTTCCTTTGTCCCCTCAGCTCATCTTCACCCCAACTGCCTCAGTCACCGCAGTTCAGCCCGAGACCTCTGCGTTATCAATCAACACGTCGCCCACCAGCGGACAGGTGCAGAACTTGGCTCTCCGTGGCCAGCAGGGGGCGCTGGCTTCCTCCCTCTCTCAGTCTCAGTTACAGAGCCTGGGTGCGAAACAGTGCCCCGGGGCATCAGCGCAGCTCTCTGTGACCCGACTTAAAGGTCCTGAAGCGGAGCCGAACTCTCAGGGATCTGCAGCGAAGAGCAGTCCTGCAGACACATCCTCAGAGACTGTgggaaaaaatgacaaaaccagTGACCTCACAACTAGGGAGCTTAACGTGTGTCCCAATGTGACCTCAGTGGCGGGCCATCCTCTCATCAGCACAGGTGAGCCATCACAGTCCGGATGCTGTCTTCACATGCATATCCAAACGAAAGTGTAGCATCTCGATCGTCTTACTAATGGATGCGTGAAAGCAACTAGAAAAGCTCAAGTGCCAGG

Function

NR:

description
PREDICTED: polyhomeotic-like protein 2 isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0035102 PRC1 complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224260.1 True 1302 mRNA 0.56 7 12911070 12930813

Neighbor

gene id symbol gene type direction distance location
phc2a LOC107737567,LOC107591107,LOC107703065,LOC107717766,LOC107593370 coding downstream 100501 12771790 ~ 12810569 (-)
ephb2a LOC107703068,LOC107593373,LOC107687404 coding downstream 186019 12674819 ~ 12725051 (-)
lrrc38a LOC107703049,LOC107737569,LOC107591108,LOC107712669,LOC107687405 coding downstream 237251 12665001 ~ 12673819 (-)
vps13d vps13d,LOC107703069,LOC107687459,LOC107712684 coding downstream 249938 12622070 ~ 12661132 (-)
rcc2 rcc2,LOC107687402,LOC107703073,LOC107712686,LOC107737572 coding downstream 349395 12555411 ~ 12561675 (-)
LOC122328487 LOC107717767,LOC107687461 coding upstream 5508 12936321 ~ 12940885 (-)
spsb1 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC103042472,LOC107591103,LOC107737563 coding upstream 136514 13067327 ~ 13080224 (-)
ca6 ca6,LOC107737562,LOC107703061,LOC107591102,LOC107687477,LOC107593430 coding upstream 192635 13123448 ~ 13128638 (-)
noc2l noc2l,LOC107737559,LOC107687416,LOC107716108,LOC107703058 coding upstream 445631 13376444 ~ 13401670 (-)
LOC122328822 LOC107703053,LOC107737553,LOC107687419,LOC107591147 coding upstream 505729 13436542 ~ 13442457 (-)
G157298 NA non-coding downstream 55218 12854297 ~ 12855852 (-)
G157295 NA non-coding downstream 57569 12853239 ~ 12853501 (-)
G157255 NA non-coding downstream 291013 12619019 ~ 12620057 (-)
G157224 NA non-coding downstream 377091 12533758 ~ 12533979 (-)
G157222 NA non-coding downstream 381577 12524479 ~ 12529493 (-)
G157349 NA non-coding upstream 99053 13029866 ~ 13040397 (-)
G157353 NA non-coding upstream 132841 13063654 ~ 13063904 (-)
G157357 NA non-coding upstream 172298 13103111 ~ 13103551 (-)
G157355 NA non-coding upstream 174948 13105761 ~ 13107193 (-)
G157360 NA non-coding upstream 185097 13115910 ~ 13116131 (-)
G156985 NA other downstream 986420 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 1053102 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 1109438 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 1164450 11741400 ~ 11746620 (-)
G157367 NA other upstream 210265 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 349443 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 1291996 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 1396153 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 1639534 14570347 ~ 14589622 (-)

Expression


Co-expression Network