tnnc1a (tnnc1a,LOC108427795,LOC107684904,LOC107736944,LOC100708228,LOC107566179,LOC107568483,LOC103385538)


Basic Information

Item Value
gene id tnnc1a
gene name tnnc1a,LOC108427795,LOC107684904,LOC107736944,LOC100708228,LOC107566179,LOC107568483,LOC103385538
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 808924 ~ 834581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224278.1
attaaaaatatggcaGATGAGGAGCAGAACAGGTGAAACCACTGACACAGCATCAGGTGTGAGCAGGAAATATCACTCTACATCTGAAACTGGTGACACTTAAAGAAAAGAACgcctcaagaaaaaaaaagaaagcaatctTGGAGCTATCTTTTATGGGATGCATTATTGGATTGCATAAATGTCCTGGTATACTTTTCTGCCTCGACCTCCTGTTGGAAGTCCAAAAATATGTGGAAAAGATAAAAAGCACATGAGGAAACAAATGAGTATGAGAAGCACACACCACATCCACTGGAGGTTCTGGAAGAGACAGAGGATACAACAGGAACTAAGGGAGAACATAGGAGGACACAGTGTGAGAGGAAATTGCTGTGTTCATCCGTGCTCTGCTACTATATGGTTTCTATGGCAACCTCTCCAAAATGATGTGCTCTGAATGGCGTTTCATGAGATGTGGGGTGATTACAGTCTAGGAAGGAAGGCTGATGTTTCTGTTAGCCTTTGCTGTAAAGGGAAGTATGCAGTGTTCTAATAAAAGCACACTTCCTGTCCTCATATTATGATTGTGCTGTATATCTTCTGCATTTCAGAGGAAATATTTCAATACTGCCCCCTTCAGAGGGCACAGAAAATTTGCATCATTTGTACAGCaatgtgtgttgttttaaatgtcaataaatgATTAGTTAAGACTACCGGggttgcttttataaaataaatagataaataaataaataaataaataaaagataaatgaataaagcatgCACAAAGCATTTTGATTCTATTTTCCATTGAATTTATTATGCACATTTAATCTGAGGAACAgatgtattttgtgtattttcctGGCTCAGTTGTAGACACGTGTCCAATTACACAGACACTATCCGTAGTTTTTAGTCACATGACCAGTTCGAAGACCTGGGGGGCAAAACATCCATGGAACTGCAGTAAAAGTCTGTTAAATTTCACATCTATTTTACAGCcacaaatatttatatcacctctcaaaacaagaaaacaaagctatgtgaataaaatgtaaataaatttccacttttatccaaagcaacttacaaataAGGACAAGGAAAGCCTTTCAGCCATGATAATGTGTGAGAGTTTGCCAGTGTTTCTCTTATGTCTTTAAAGCTATTTAGCTGAACTAAAGAAGTTACTATATTTTGTATAGTGCAATAATGCCTTTGTCTCTTTGTCACTTAATACACTAAATTCATGGTGGAGAAATgcctactttttattttatttcattttacaggtATATTAGAATGTATGCAAGTACATTTCTTTGCTCAGACACAAAGATTAGATTAATTTGCTGATAGTTTACCCTCACATATTTGAGTGAACCCTCATCCTGACCACATAGTTGTTTTATCAGGCTGGAGTGACTGTGATGGACGTCCCGTACTCAGAGGGGCAGGAGGGAACAGGCTGTCCTGCTTCATAAAGCTCATTTAGCACCGTGTTTTCTGCTCTCCACCAGTGCCAGCACTCTTCCTGATCTCCTCTCAGGTGACATACAATGAACGATATCTATAAAGCAGCGGTAGAGCAGCTCACTGAAGAGCAGAAGAATGAGTTCCGCGCagcatttgatatttttgttcagGATGCTGAGGATGGGTGCATCAGCACTaaggagctggggaaggtgatGAGAATGCTGGGTCAGAACCCCACGCCGGAGGAACTACAGGAGATGATTGATGAGGTGGATGAGGATGGCAGCGGTACGGTGGATTTCGAGGAGTTTTTGGTCATGATGGTGAGGTGCATGAAAGATGATAGCAAAGGAAAGTCAGAGGAAGAACTGGCAGAACTCTTCCGTATGTTTGATAAGAATACAGATGGTTACATTGATCTTGATGAACTGAAGCTTATGCTGGAAGCTACAGGTGAAACCATCACTGAAGATGATATTGAGGAGCTAATGAGGGATGGAGACAAAAACAATGATGGGAAAATTGATTATGATGAGTTCTTAGAGTTCATGAAAGGAGTggaataaataatgaagaaatGTCTTCCTGGTGTTTCACCCTGGATTGTCTGTACACAAAAGCTTAATGAGAAAGATCAACAGAGAGTCTATGGTATATCTCATTATTGTGCTTGTCATTTTCAGCACACTGTTTTcagaatattaaattatttttcacattgcaTAAACAATCCGTGCAGATTTAA
>XM_043224279.1
AACCAGAATAGGGTGTCGGTCGAGCCATGGCAAGGCAAAGAATTACTGACAGTGACAGGTGAGGTAACTGGAAGTGTGGTTCGTGGATGAAAGAGAACTCGAAGGTTATTGACGAGTTTCTGAAATGGGTCTGTGGTGCTCATGCTGTGCAAGTTTGTAATCTGGGTGTAATCTTGCAGGTGAGTAATCAGTTCAAAGACAGTTTAGAACTTTGTAATGCAGAGCAGTAATATCAGTCTTTATCTTTCCAGGAAAAGATAAAAAGCACATGAGGAAACAAATGAGTATGAGAAGCACACACCACATCCACTGGAGGTTCTGGAAGAGACAGAGGATACAACAGGAACTAAGGGAGAACATAGGAGGACACAGTGTGAGAGGAAATTGCTGTGTTCATCCGTGCTCTGCTACTATATGGTTTCTATGGCAACCTCTCCAAAATGATGTGCTCTGAATGGCGTTTCATGAGATGTGGGGTGATTACAGTCTAGGAAGGAAGGCTGATGTTTCTGTTAGCCTTTGCTGTAAAGGGAAGTATGCAGTGTTCTAATAAAAGCACACTTCCTGTCCTCATATTATGATTGTGCTGTATATCTTCTGCATTTCAGAGGAAATATTTCAATACTGCCCCCTTCAGAGGGCACAGAAAATTTGCATCATTTGTACAGCaatgtgtgttgttttaaatgtcaataaatgATTAGTTAAGACTACCGGggttgcttttataaaataaatagataaataaataaataaataaataaaagataaatgaataaagcatgCACAAAGCATTTTGATTCTATTTTCCATTGAATTTATTATGCACATTTAATCTGAGGAACAgatgtattttgtgtattttcctGGCTCAGTTGTAGACACGTGTCCAATTACACAGACACTATCCGTAGTTTTTAGTCACATGACCAGTTCGAAGACCTGGGGGGCAAAACATCCATGGAACTGCAGTAAAAGTCTGTTAAATTTCACATCTATTTTACAGCcacaaatatttatatcacctctcaaaacaagaaaacaaagctatgtgaataaaatgtaaataaatttccacttttatccaaagcaacttacaaataAGGACAAGGAAAGCCTTTCAGCCATGATAATGTGTGAGAGTTTGCCAGTGTTTCTCTTATGTCTTTAAAGCTATTTAGCTGAACTAAAGAAGTTACTATATTTTGTATAGTGCAATAATGCCTTTGTCTCTTTGTCACTTAATACACTAAATTCATGGTGGAGAAATgcctactttttattttatttcattttacaggtATATTAGAATGTATGCAAGTACATTTCTTTGCTCAGACACAAAGATTAGATTAATTTGCTGATAGTTTACCCTCACATATTTGAGTGAACCCTCATCCTGACCACATAGTTGTTTTATCAGGCTGGAGTGACTGTGATGGACGTCCCGTACTCAGAGGGGCAGGAGGGAACAGGCTGTCCTGCTTCATAAAGCTCATTTAGCACCGTGTTTTCTGCTCTCCACCAGTGCCAGCACTCTTCCTGATCTCCTCTCAGGTGACATACAATGAACGATATCTATAAAGCAGCGGTAGAGCAGCTCACTGAAGAGCAGAAGAATGGATGCTGAGGATGGGTGCATCAGCACTaaggagctggggaaggtgatGAGAATGCTGGGTCAGAACCCCACGCCGGAGGAACTACAGGAGATGATTGATGAGGTGGATGAGGATGGCAGCGGTACGGTGGATTTCGAGGAGTTTTTGGTCATGATGGTGAGGTGCATGAAAGATGATAGCAAAGGAAAGTCAGAGGAAGAACTGGCAGAACTCTTCCGTATGTTTGATAAGAATACAGATGGTTACATTGATCTTGATGAACTGAAGCTTATGCTGGAAGCTACAGGTGAAACCATCACTGAAGATGATATTGAGGAGCTAATGAGGGATGGAGACAAAAACAATGATGGGAAAATTGATTATGATGAGTTCTTAGAGTTCATGAAAGGAGTggaataaataatgaagaaatGTCTTCCTGGTGTTTCACCCTGGATTGTCTGTACACAAAAGCTTAATGAGAAAGATCAACAGAGAGTCTATGGTATATCTCATTATTGTGCTTGTCATTTTCAGCACACTGTTTTcagaatattaaattatttttcacattgcaTAAACAATCCGTGCAGATTTAA

Function

symbol description
tnnc1a Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction; cardiac ventricle development; and response to activity. Predicted to be part of troponin complex. Is expressed in heart primordium; mesoderm; muscle; and pericardial region. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).

NR:

description
troponin C, slow skeletal and cardiac muscles isoform X4

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0003231 cardiac ventricle development biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224278.1 True 2217 mRNA 0.39 8 808924 834581
XM_043224279.1 False 2200 mRNA 0.39 7 808924 816154

Neighbor

gene id symbol gene type direction distance location
LOC122329137 NA coding downstream 498347 308363 ~ 310577 (-)
LOC122329136 NA coding downstream 542892 258605 ~ 266032 (-)
raf1a raf1a,LOC107713759,LOC107684881,LOC108427788 coding upstream 48611 883192 ~ 895323 (-)
gp9 LOC107736950,LOC107675164,LOC107564798 coding upstream 68927 903508 ~ 905461 (-)
LOC122329272 LOC107736949,LOC107675168,LOC107564797,LOC107555789,LOC107684883,LOC108181449,LOC107713762,LOC107684884,LOC107555806 coding upstream 71030 905611 ~ 958991 (-)
nup210 nup210,LOC107684885,LOC107555788,LOC107675171,LOC107736952,LOC107564796,LOC107713743 coding upstream 131093 965674 ~ 991444 (-)
LOC122328452 wnt7a,LOC107684886,LOC107736972,LOC107713763,LOC107555800,LOC568110,LOC108276349,LOC107564804 coding upstream 175322 1009903 ~ 1018911 (-)
G153911 NA non-coding downstream 32874 770513 ~ 776050 (-)
G153760 NA non-coding downstream 125813 679034 ~ 683111 (-)
G153757 NA non-coding downstream 224342 575924 ~ 584582 (-)
LOC122328559 NA non-coding downstream 224433 583143 ~ 584491 (-)
LOC122328560 NA non-coding downstream 232090 575989 ~ 576834 (-)
G153893 cnbp non-coding upstream 7138 841719 ~ 899766 (-)
LOC122328476 NA non-coding upstream 125693 960274 ~ 963577 (-)
G153966 NA non-coding upstream 370898 1205479 ~ 1206602 (-)
G153967 NA non-coding upstream 372119 1206700 ~ 1207587 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding upstream 554781 1389362 ~ 1393135 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 23045 779085 ~ 785879 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other upstream 30896 865477 ~ 882184 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other upstream 218796 1053377 ~ 1064774 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 673117 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 1268129 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1934901 2769482 ~ 2839047 (-)

Expression


Co-expression Network