ribc1 (LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094)


Basic Information

Item Value
gene id ribc1
gene name LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16488226 ~ 16505803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224307.1
AGAAACAAGAGGCGACCAATGGCAGCTGGCTGACGTCATCAACAAGCGCGAGGACGGGGCATGTCTGTGCAAGCATGGTTGATTGTGCTCAGAACATGTACAAGGCTGATTTACCCGTGGATGAGTCTGCGCAGCGGGTGGTGGAACGGCGTCGGGCCGCAGAGGCTGAACGCAAAAACCGAATATTCAGCACGAGAAGTCGAGTAATCGGGGTTGACCTGCACGCGCTCCACAAACAGCGGGAGGAGAAACAAGAACTGCTGGAGATGGAGAAGCAGCGGGACATGGCTCATGATCTGTTGCGCTTGTCCCTGGATGAAATGGTAATGCAACAGaataaagaggaagaggagtTGCGAAAAGAGTTGGCTCAGGACCTGGTCCGATATAGAGCAATATATCAACGTGCTGAGGACAGCCGTGATGCAGATATCAACTCTAACCGACAGGTGGCGCCAGACGCCAGTATTTCTGTGTCGGACTCTGCATTGGGACCCGCCAGTATGCAAGTGTTTTTGGGAGAAGGagttaaagaaaaagaaaagaaaagagctcAGATGGAAATGAATGAGAGAAACCTGAGAGCTCaaaaggaggagagagaaaaacaagaaagagaacaaaaaaacagagagCTGCTAACCGGCAGGGAGTTGGTGGAAAAAGACCTTAGGGCAGTGAAGCTGAATGTCCTGGAGGAAGAGTGCAAAAGAGCGGCACACATTGCACTCAGTCATTACAATCGAGCTCAGGCTGAGGAGAGGATGGAGAGGGAGCAACAAGAGAGAcggaggagagagggagaggagctGGCTGAGGTGCGGTACatggtgacctctgacctcctgaCAGAGCGACCAGAGGCTGCCAAGAGAAAAAACGAATCCTCAGCAGAGGGTCCACGAGTCCTGACTGACCGCTGGAAGGGCATGACCCCACCGCAGATCAGTGAAATccacagaaagagagaagagcagTGTTTGGAGAAAGAGagactgagagagatggagaggcAGAGAGATGTGGCCTGGGATTACCATCTGACAGAGCAGGCCAGACAGCAGGAGAGAGACGATAATAGAGACAAGGAGttgcagagagagaggagaacgCAGCTCGATAAATACAATCAACAGCTGGCACGAGAGCAGCAAGCACAccaACACTACCTGGACAAGCAGCTGTATACCAACCGTCCCACAGTTCAGTACTTCACCCAGTTCAGCACAAGCTCTCGCTAAAGAACCATCTCATTCCATCCTCTCAGCTAATCATTCTCCTGCACGACAAATAAAGTGAAGTACTGGATTTCAAAGCACTGTGTACGTTTGACATTCATAAATTGGACTTATACAGTAGGTATTGCTGACAGTTgccattataaaatgttatatagtGATAGAATATTGCAGATGTAGATTGATTTAAGTATTTACTTACACTGGCTTATGGTGATGCAGATACAATTACAAAATCCAGGCAGCCCACCCTCACTTCCCTTTCAGTCCACAACACTGCAGGGGAATGTGACCAATACAGTCCCACAACCTCATTCATCTCgtccttcatttattttcacatcatATGcagtaacaaacaaaacatacaggAGGAATAAGAGACTATTATGTCAAGCTTATTTATGCATTAAGCCTACAGTTTAAGATGCATTATGAGCTTGAATGCGTACATTTGACGAGTAACAACAGAAACAGCAACGTTCGTCCGCTAGTCAAGCTTTAAACGGTGCCCTCCCACCCAGTTTTAGTTGCAGTAGCAGAGGGCAGTATAGTGGATATCCGAGAGTCGATTCACCTCCGAGCTCAATACACAGTCAAGACACTGACAAAATACACAAGTCGTCTAGCAGCAGTTCAGTTGAATATTGAGTTGAATATAATTTGCATCACTTCCCCCTCCTGTAAGAAAATAGATCTCTAAGAGACTTTTGTCCTGAGTGTGTCTGTACAGCTTTTGTGAGGGAGGCTAACACAGATCGGACAATCCCAGAGGGCTGGGAATCACTGCAAAAAGCCCGCCGCAAGACAGTGGTCTCAAAGATCTGAGTCAGCGTGTTTCTATTGCTCCCtggaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaataagATGACTGCGTCCCTCCTTTCACGCTGCCTCTGCAGCAATAGATTCTAATCAGATACGCACAATACTGCCATTCTTTAGCACTCGGGAAACTATAAGCGCAATCATGTTTCAATTagcttttttctgtctcttttatccaatcagctttttttcagaacctgcaacatttatttatcaaaggactttttttttagttatttaaaactatGCACTACTTGTCTACCACACTCAAATCACAACTAACAAGTTActctaaagtttaaaaaaaagttacaaaactcaaacaaatgtaaaaaacaatcaACAAGACACAGTTTTCAACGTCATAACAAACAATCTTTTGGGCtatatttacattcatctggaaattaagagattttttttctccctgtgCCCTTCTCTTGAGAAATACCAGATGTGCCATAGATTCTCTCAGTGCTATATTCTGCTATATTTGTTTATCAAACATCAGAtcaaataaaccaaaaagcaaaaaaaggaacaaatgcTATTTGGTATACTGGTATGGAACTATTCCCACCCAAACAAAGCATACATTCTGTGTAATAAGACAAGCCAATACATGATTGCATTTTACGTAACCAACCTAAACTGTGACGTTCCCTCCCACAGCCCTATCTAACTCAATACGACCTCAAATCTACGCACCTTACGTGTGTATTCTTATGGCTTTACACCAACAGGACTGCAAGAGAGAATCAGTACAGCTTAATACAATGCTGAAAACAAGAATTAAGAACACAGACATACAGAGGGAGGAGTAAACATGAGAGATGGTGGTGATTATGTTGTCGAAGGCAGGCACAGGAACCGATGGAGATGAAAGAGTATTATAATACTGTATTTGGCTAAATTGATAGATGCTTGTATGTACAGCTTGCTATAAACGATCTAGCGTCGTAGAGCCATTGCATCTCATGTATGTACATCTGTAATCGTAACTGAGGGGATGCCGATATGTATCATCTATTGAATCactacaatattacaatatatcaACATACAGGTGACTTAAAAGGTACTGTAAGCAAATTGTATGGAACGGAATTGTTTAAATGGTGGCAGATCTGAAGGTGACATTGTAATAGATTGTAGGAAATTCGCTGGAAGGATGGATTATGGCATcgagttaaaaattaaacatttcacaatatcaaGATGATTTTGTAATTTCTGAAAAGTGCTGGGCAATGTACAAACAGCTACTCTAATATAACTAAATTTAGCATTGTTAttcacc
>XM_043224308.1
TGTAGCTTCAGTTAACTATAATTTCGGTTTGGAAAACGAAATTTGCATATCCAAATAATTTTTCATGAATAATATATGTCTGTCAAACGTATCCCATAACGTACTAAAGCCGCGTCACCAGTTACCATGGCTACCATGTCAAACACTCATCAAACACAAGAGGAAAGCAGGCGCACTCCCGTTCGTCGAAACCCAACTGATATTCACCAAACATGTACAAGGCTGATTTACCCGTGGATGAGTCTGCGCAGCGGGTGGTGGAACGGCGTCGGGCCGCAGAGGCTGAACGCAAAAACCGAATATTCAGCACGAGAAGTCGAGTAATCGGGGTTGACCTGCACGCGCTCCACAAACAGCGGGAGGAGAAACAAGAACTGCTGGAGATGGAGAAGCAGCGGGACATGGCTCATGATCTGTTGCGCTTGTCCCTGGATGAAATGGTAATGCAACAGaataaagaggaagaggagtTGCGAAAAGAGTTGGCTCAGGACCTGGTCCGATATAGAGCAATATATCAACGTGCTGAGGACAGCCGTGATGCAGATATCAACTCTAACCGACAGGTGGCGCCAGACGCCAGTATTTCTGTGTCGGACTCTGCATTGGGACCCGCCAGTATGCAAGTGTTTTTGGGAGAAGGagttaaagaaaaagaaaagaaaagagctcAGATGGAAATGAATGAGAGAAACCTGAGAGCTCaaaaggaggagagagaaaaacaagaaagagaacaaaaaaacagagagCTGCTAACCGGCAGGGAGTTGGTGGAAAAAGACCTTAGGGCAGTGAAGCTGAATGTCCTGGAGGAAGAGTGCAAAAGAGCGGCACACATTGCACTCAGTCATTACAATCGAGCTCAGGCTGAGGAGAGGATGGAGAGGGAGCAACAAGAGAGAcggaggagagagggagaggagctGGCTGAGGTGCGGTACatggtgacctctgacctcctgaCAGAGCGACCAGAGGCTGCCAAGAGAAAAAACGAATCCTCAGCAGAGGGTCCACGAGTCCTGACTGACCGCTGGAAGGGCATGACCCCACCGCAGATCAGTGAAATccacagaaagagagaagagcagTGTTTGGAGAAAGAGagactgagagagatggagaggcAGAGAGATGTGGCCTGGGATTACCATCTGACAGAGCAGGCCAGACAGCAGGAGAGAGACGATAATAGAGACAAGGAGttgcagagagagaggagaacgCAGCTCGATAAATACAATCAACAGCTGGCACGAGAGCAGCAAGCACAccaACACTACCTGGACAAGCAGCTGTATACCAACCGTCCCACAGTTCAGTACTTCACCCAGTTCAGCACAAGCTCTCGCTAAAGAACCATCTCATTCCATCCTCTCAGCTAATCATTCTCCTGCACGACAAATAAAGTGAAGTACTGGATTTCAAAGCACTGTGTACGTTTGACATTCATAAATTGGACTTATACAGTAGGTATTGCTGACAGTTgccattataaaatgttatatagtGATAGAATATTGCAGATGTAGATTGATTTAAGTATTTACTTACACTGGCTTATGGTGATGCAGATACAATTACAAAATCCAGGCAGCCCACCCTCACTTCCCTTTCAGTCCACAACACTGCAGGGGAATGTGACCAATACAGTCCCACAACCTCATTCATCTCgtccttcatttattttcacatcatATGcagtaacaaacaaaacatacaggAGGAATAAGAGACTATTATGTCAAGCTTATTTATGCATTAAGCCTACAGTTTAAGATGCATTATGAGCTTGAATGCGTACATTTGACGAGTAACAACAGAAACAGCAACGTTCGTCCGCTAGTCAAGCTTTAAACGGTGCCCTCCCACCCAGTTTTAGTTGCAGTAGCAGAGGGCAGTATAGTGGATATCCGAGAGTCGATTCACCTCCGAGCTCAATACACAGTCAAGACACTGACAAAATACACAAGTCGTCTAGCAGCAGTTCAGTTGAATATTGAGTTGAATATAATTTGCATCACTTCCCCCTCCTGTAAGAAAATAGATCTCTAAGAGACTTTTGTCCTGAGTGTGTCTGTACAGCTTTTGTGAGGGAGGCTAACACAGATCGGACAATCCCAGAGGGCTGGGAATCACTGCAAAAAGCCCGCCGCAAGACAGTGGTCTCAAAGATCTGAGTCAGCGTGTTTCTATTGCTCCCtggaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaataagATGACTGCGTCCCTCCTTTCACGCTGCCTCTGCAGCAATAGATTCTAATCAGATACGCACAATACTGCCATTCTTTAGCACTCGGGAAACTATAAGCGCAATCATGTTTCAATTagcttttttctgtctcttttatccaatcagctttttttcagaacctgcaacatttatttatcaaaggactttttttttagttatttaaaactatGCACTACTTGTCTACCACACTCAAATCACAACTAACAAGTTActctaaagtttaaaaaaaagttacaaaactcaaacaaatgtaaaaaacaatcaACAAGACACAGTTTTCAACGTCATAACAAACAATCTTTTGGGCtatatttacattcatctggaaattaagagattttttttctccctgtgCCCTTCTCTTGAGAAATACCAGATGTGCCATAGATTCTCTCAGTGCTATATTCTGCTATATTTGTTTATCAAACATCAGAtcaaataaaccaaaaagcaaaaaaaggaacaaatgcTATTTGGTATACTGGTATGGAACTATTCCCACCCAAACAAAGCATACATTCTGTGTAATAAGACAAGCCAATACATGATTGCATTTTACGTAACCAACCTAAACTGTGACGTTCCCTCCCACAGCCCTATCTAACTCAATACGACCTCAAATCTACGCACCTTACGTGTGTATTCTTATGGCTTTACACCAACAGGACTGCAAGAGAGAATCAGTACAGCTTAATACAATGCTGAAAACAAGAATTAAGAACACAGACATACAGAGGGAGGAGTAAACATGAGAGATGGTGGTGATTATGTTGTCGAAGGCAGGCACAGGAACCGATGGAGATGAAAGAGTATTATAATACTGTATTTGGCTAAATTGATAGATGCTTGTATGTACAGCTTGCTATAAACGATCTAGCGTCGTAGAGCCATTGCATCTCATGTATGTACATCTGTAATCGTAACTGAGGGGATGCCGATATGTATCATCTATTGAATCactacaatattacaatatatcaACATACAGGTGACTTAAAAGGTACTGTAAGCAAATTGTATGGAACGGAATTGTTTAAATGGTGGCAGATCTGAAGGTGACATTGTAATAGATTGTAGGAAATTCGCTGGAAGGATGGATTATGGCATcgagttaaaaattaaacatttcacaatatcaaGATGATTTTGTAATTTCTGAAAAGTGCTGGGCAATGTACAAACAGCTACTCTAATATAACTAAATTTAGCATTGTTAttcacc

Function

NR:

description
RIB43A-like with coiled-coils protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224307.1 False 3406 mRNA 0.43 8 16488226 16505803
XM_043224308.1 True 3523 mRNA 0.43 8 16488226 16494459

Neighbor

gene id symbol gene type direction distance location
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding downstream 86521 16399805 ~ 16401705 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding downstream 111418 16359689 ~ 16376808 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 143539 16341446 ~ 16344687 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding downstream 156554 16259075 ~ 16331672 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding downstream 253652 16222809 ~ 16234574 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding upstream 35711 16541514 ~ 16545688 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding upstream 103675 16609478 ~ 16616339 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 168434 16674237 ~ 16677367 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding upstream 174503 16680306 ~ 16681688 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding upstream 326282 16832085 ~ 17007286 (-)
G158388 NA non-coding downstream 44189 16443806 ~ 16444037 (-)
G158353 NA non-coding downstream 48946 16416925 ~ 16439280 (-)
G158383 NA non-coding downstream 54597 16432961 ~ 16433629 (-)
G158377 NA non-coding downstream 63864 16423964 ~ 16424362 (-)
G158333 NA non-coding downstream 240933 16247016 ~ 16247293 (-)
G158417 masp2,LOC107571531,LOC107708846 non-coding upstream 24249 16530052 ~ 16531096 (-)
G158432 NA non-coding upstream 47240 16553043 ~ 16553395 (-)
G158462 NA non-coding upstream 101658 16607461 ~ 16607960 (-)
G158481 NA non-coding upstream 218128 16723931 ~ 16724403 (-)
G158483 NA non-coding upstream 221635 16727438 ~ 16727715 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 129521 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 244831 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 318392 16143833 ~ 16169834 (-)
G158231 NA other downstream 479311 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 770976 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 670822 17176625 ~ 17184385 (-)
G158609 NA other upstream 833464 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 907900 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1540123 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1725840 18231643 ~ 18235536 (-)

Expression


Co-expression Network