srm (srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652)


Basic Information

Item Value
gene id srm
gene name srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16505922 ~ 16510329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224309.1
AAATCCCCGGCAATGGACAACATTAAAGACGGGTGGTTCACCGAAACGTGCACATTATGGCCCGGCCAAGCGATGAGTCTTCAAGTAGAGGAGGTGTTGTATCATAAAAAATCGAAGTTCCAGGATGTGATGGTTTTTAAAAGTAAAACTTACGGAAATGTGCTGGTTTTGGATGGAGTCATCCAATGCACAGAGCGAGATGAATTTTCTTATCAAGAAATGATTGCCAACCTACCTCTCTGCTGCCACCCTTGCCCAAAGAAGGTTCTCATCATTGGTGGAGGAGATGGAGGGGTCCTGAGGGAGGTGGTCAAACATCCACTGGTTGAGTCTGTCGTTCAGTGTGAAATTGATGAGGATGTAATAAATGTCTCCAAGAAGTACCTCCCTGGAATGGCAAAAGGCTTCTTCAGCCCCAAACTCACTCTGCATGTAGGTGATGGCTTTGAATTTATGAAAAAGAACCAGGATGCCTTTGATGTCATCATCACAGACTCCTCAGACCCTGTCGGTCCGGCTGAAAGCCTGTTCAAAGAGTCTTACTATCAGCTCATGAAAACGGCACTTTGTGATGGAGGAATTCTCTGTTGTCAAGGAGAGTGTCAGTGGTTGCATTTAGAGCTAATCAAAGAAATGCAGACTTTTTGTAAGACCCTCTTTCCTGTAGTAGACTATGCATACTGCACCATTCCAACATATCCAAGTGGACAAATCGGCTTCATGCTTTGCAGTAAAAATACGAAAACTAATTTCCGTGAGCCACTACGAGAACTACCCAGAGATGAGATTGAGAGCATGAAACTCAAATACTACAATCCTGAAATCCACCGTGCGGCATTCATCCTCCCAGAATTTGCCAGAAAGGTACTAAGCGAAGCGTAAGCGGCTTCATGGCTGCCATCTTGTCAACACGCTGCCTTCTGTGAAAGCAGAACAAACCCTCAGCTGCAGAAGCTCCTACACTGCATCCCTCTCCCGCTTTCAGTTAGTCAATGGACTGCTAATGGACAAGTGCAAATGCCTTTCTGGGGAAATTCTTTTTGTCTGTCCAGTTTCATCAGTACGTCggtcttatttgtttttttttaatttccttttacaACTCCGCTCTCCCCGTCAAACCTTTAGAAATGTACAAACAGACAATCATGCATGTTCTGTGACCGATTCCAGTCTTTCTCTTACTCGTGTTGAGTATGAAAAAAGAGTGCAATGTTCCGCTACAAACTGTCCtgttttctgttaattaaataagcatgcaggtattttaaatgaactgcatATCTTCTCTGTAACCCTTCAGGTCAGtaacaattatacattttgtcaATATGCTCTATTAAGGTTTCATGTTATGGGTCACGTGTTCAACAGTACGCTACtgttaaacttaaaataatatttagtataatttaaaactattatCTAAAGTCTGTACAGAAGATTCTTTATCTAACTAGCAAAACTGGAAACTATTTTCTGCAGTTATCTAACAAATAAATGGTTTGTTTTCCTTCTTAGCCTGTAAAGGTGGCATATGGGCTCTGTGGGTGACTTGTGCTCTGGCTCTCCTGAACAAGTCTGATTACATGATGtgattttgttagtttttttctttttttttgtagaggaaATAGTGTTTGATATGCAGCCTTTTTGAGTGATATGCTATGGTGTATTGCAAATGTATTCTTATGGTCAGTGGATTCTGTATGATGGAACGATTTTTGCTGTGTCTTTTAACATTAGCATTACTGGAAGTCTCAGACACTGAGACGCTGTCTTAATATTGAATATAATCGTGGAGGTATACTCggataaaataacagcattcgATGGATAGATGAAGCGCTTTTAAGGGTAGTCGAATAGGACAAACTATTTTGTACTCTTGTCAAGTTTAACAATATGGAAGAGGGTTTATTTGTCCTTTTaccatttaatgtttatgatgtaaatttaattttgccAATTTCataaattgttttgaaataaaacttatGTAACCACA

Function

symbol description
srm Predicted to enable spermidine synthase activity. Acts upstream of or within spermidine biosynthetic process. Is expressed in forebrain; immature eye; optic tectum; and tail bud. Orthologous to human SRM (spermidine synthase).

NR:

description
spermidine synthase isoform X2

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00797 speE, SRM, SPE3; spermidine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224309.1 True 2011 mRNA 0.40 8 16505922 16510329

Neighbor

gene id symbol gene type direction distance location
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding upstream 324 16494956 ~ 16505598 (+)
l1cama LOC107708848,LOC107681982,LOC107570628,LOC107716224,LOC107586533,LOC107695787 coding upstream 15843 16445121 ~ 16490079 (+)
huwe1 huwe1,LOC107716223,LOC107586534 coding upstream 66648 16403912 ~ 16439274 (+)
zgc:153867 zgc:153867,LOC107586536,LOC107570608,LOC105897346 coding upstream 145108 16353722 ~ 16360814 (+)
birc5b birc5b,LOC107571769,LOC107708796,LOC107695794,LOC107716091,LOC107586566,LOC107681933 coding upstream 170309 16334501 ~ 16335613 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding downstream 2778 16513107 ~ 16514904 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding downstream 19543 16529872 ~ 16539021 (+)
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding downstream 106840 16617169 ~ 16619703 (+)
LOC122328573 NA coding downstream 644866 17155195 ~ 17162236 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding downstream 670543 17180872 ~ 17214492 (+)
G158117 NA non-coding upstream 540158 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 556501 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 568051 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 624030 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 677989 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 29207 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 35512 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 38910 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 45088 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 98496 16608825 ~ 16611041 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other upstream 422393 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 482528 16022199 ~ 16023394 (+)
G157620 NA other upstream 1201372 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1509777 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1747705 14725910 ~ 14758217 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 71641 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 110869 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 125117 16635446 ~ 16669648 (+)
G158486 NA other downstream 221017 16731346 ~ 16732884 (+)
G158524 NA other downstream 571876 17082205 ~ 17082655 (+)

Expression


Co-expression Network