LOC122328564 (LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970)


Basic Information

Item Value
gene id LOC122328564
gene name LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10646963 ~ 10658747 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224311.1
TTTCACGTCGACGCTCGTCTTCCCTCACGAGGCTCTCAAACAAACCTCACGCGCCAGAATCCCTCTCATTATCAGCGGCAGCACCGCCCCGTCGACTCGCCCTCCCGAGCAGCGGAGCACCGCTGTGGCGGAGTCCTTGACGGGGACGAGCACCCGGGTGAACACGACGAAACGCCGCTGTTTACATGAAGGCAGGCAGATTCTCGCCGGAAGGCTGCGACCAGGCTGGCTGCAGCTGAGCTGTTCATGCTGTGTTGACAGAGAGGAAGACCGATCCAGCTGAAGAAGGAGAAGGAAGGGAGAAGACTGCTGACTCCATGTCTTCGCCAAATAAAAGATCTGGCTCTGGATCACGCAAATTCAACCTGCTGAAGGCCCTACAGCCTAAGCACCGCTTGCAACAAATGCTGTCGTCTCCCACTGCATCCCCTGTTTTTGACTATTGCAGGTTTATAGAGCTAGACTACACACCCATGGAGTCAGGCATTATGGTCTCTATGAGACAGAGCAGAGGATTTCTGACACCAAAGTCCCCGGAACACCACTGTCGACGGAGTCCAGCACCTGTCAGTAACCGTGATCCCTATGGAAATGCCTCTCTCAGCAGCAGTAGCAATTCAGGGTCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCGTCACATAAAATACACCTCCTGCAATGATAACCATGGTATCCGACCCCCTCCACCTGAGCAATACCTTACCCCGCTGCAACAGAAAGAGGTGTGTATCCGACACCTCAGAGCACGGCTCAAAGAAACCATCGAAAGACTACAGGACAGGGATACTGAGATTGATGAGTTGCGTACTCAGCTGTCTCGTATGCAAGAGGATTGGATAGAAGAGGAGTGCCACCGTGTGGAGGCCCAGTTGGCTCTGAAGGAGGCTCGCAGGGAGATCCAGCAGCTTAAGCAGGTGGTCGATGTCGTCAGATCTAGTCTGGGAGACACCGACACTGGAGTGCAAAAGTGCTTCCAAGACATAAACCTCCAGAACCACAAGCTGGAGTCTTTATTGCAAAGCATGGAGCTGGCTCAGGTCGGGACCCCCAAAACAGGCGAAACCCTGGCAGGTGGAGGGGTGGTGGGGGCAGAGCTGGAGGTCAGCGAGGGCCTGGTGGAGTCTTCTGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGCTAAGTGACCAGACTGGCCAGGAACGTGGCAGTAATGAAAATGGGTGTGACATTCCATGTTTGTCAGGTGAGGGCACGCAGGACAGCGGGTTTGTTTGCTGTGGAGAAAGTGGAAGAGGAGCAAGCAAAGCAGACCTGCTCCTGGAGGCTGCGTTTTTGTCTCAAGAGACGGCCTCGCTGCTTAACGCGCACTCCCGCCTGCCACACTCCTCCACCTATGAAGCACTGAGCATCAGCGAGCCGAGAGTTGTGCCACTCCGCTGCAGTGGGATCGGGACAGGGACAACTGTCAGTGTAAGTCATCCATGTCTGTCGCATCATCACCTATATCTACATCACCTGCGTGAGCAAGGCATTCAAACCGACTACGACCATGCCCCTGCTTCGGCACCTGCTCATGGTCCCAGTACGTCCTTTAACTCCGATCTGGACACTATTGCTGAGCGTACCTTCCGCTCCCAGGCATGCAGTCCGACCTCTACCTGGATGTCCGATGAGGGAGATGATCTGGAGTCGGTAGCCACAGAGTCAGCCATTACGGCAACAGTTGCCACAGTTTCTGTCGTAACAGACTTTTCCACTAAGTCTGCACCAGCTATTGCAATGGAGCCTTGGGCATCAAAAGGACCTGCGACTTTAGTGTTGGAGTCTTCTGTCAAGGAGACAACTGTTTCCGAGATCCTTACAGTCTTACCAATCACCACAACAGCTTTGACCACAGACACCATGGGGTCCCAAGTACAATCTCAACCTGTGACAGACCCTTTGCCAAACCCTGGCACCTCACCTTGCTCCATAGAGCCATTGTTTGGCATTGAAGGAGAGCCCCTTCCACAGACCACTCAGCCTCTTAGTGTACTAACAGAGGCTGGGGTTGAAGGGGATCATGTCATTAATATAGGCACAGACGATGAAGATGAGGTTGATGAGAGTGCGACGAACACAGAGTCCAAGTCATCTGGCTGTGGTTTACCAGCAAAGAACTACTGGAGCCGGCACTTCCTAGTGGATTTGCTTGCGGTGGTCGTGCCAGTGGTCCCCACAGTAGCTTGGCTCTCGGGTCCACACCGTGTTGGTCAGCCAATGTACCATATTGGTTCTCTCTGCGGGTTGTTGCACGGTGGCCTCCATTCCCTGGGCGCCGAGGAGGAGGTATTCGCACTACCCGCAGGAGGAGGTGGTCCGGGGGAATGA

Function

NR:

description
PREDICTED: syntaphilin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224311.1 True 2396 mRNA 0.55 8 10646963 10658747

Neighbor

gene id symbol gene type direction distance location
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding upstream 80306 10555276 ~ 10566657 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 197632 10447808 ~ 10449331 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 214460 10429277 ~ 10432503 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 265573 10368453 ~ 10381390 (+)
LOC122329250 si:dkey-261h17.1 coding upstream 324956 10316085 ~ 10322007 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding downstream 107115 10765862 ~ 10772199 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding downstream 128137 10786884 ~ 10870751 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding downstream 216077 10874824 ~ 10884303 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding downstream 225719 10884466 ~ 10892545 (+)
trnae-cuc_40 NA coding downstream 243322 10902069 ~ 10902140 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding upstream 126196 10520142 ~ 10520767 (+)
G156171 NA non-coding upstream 258337 10387868 ~ 10388626 (+)
G156169 NA non-coding upstream 259463 10386960 ~ 10387500 (+)
G156217 NA non-coding upstream 300909 10263990 ~ 10346054 (+)
LOC122328771 NA non-coding upstream 390557 10254786 ~ 10256406 (+)
G156398 NA non-coding downstream 8114 10666861 ~ 10674148 (+)
G156413 NA non-coding downstream 37555 10696302 ~ 10696558 (+)
G156417 NA non-coding downstream 43982 10702729 ~ 10703093 (+)
G156431 NA non-coding downstream 68171 10726918 ~ 10727164 (+)
G156432 NA non-coding downstream 69186 10727933 ~ 10728230 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 74717 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 92243 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 128212 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 219801 10415663 ~ 10427162 (+)
LOC122328781 pifo other upstream 283145 10329851 ~ 10363818 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 40051 10698798 ~ 10700895 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 255157 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 418407 11077154 ~ 11085604 (+)
G156586 NA other downstream 515674 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 1038667 11697414 ~ 11746570 (+)

Expression


Co-expression Network