LOC122328575 (LOC107714980,LOC107664226,LOC107563140,LOC107664227,LOC107714944)


Basic Information

Item Value
gene id LOC122328575
gene name LOC107714980,LOC107664226,LOC107563140,LOC107664227,LOC107714944
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17784715 ~ 17786242 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224320.1
ATGAATCGCTATAACCCGAAAGAGCTCGTTCGGAAATCTCAGGAAGCCAAAGAACAGGCGTATTGCCCCTACAGCAAGTTCAGAGTTGGAGCAGCTGTCTTAACAAGCGATGGAAAAGTGTTCACAGTCTACAGTACTGTTTTCTTAACAGGTTGTAACGTAGAGAACGCCAGCTATCCTCTTGGACTGTGTGCTGAGAGGACTGCCATCTCTAAAGCTGTGTCTGAGGGATACACCGGCTTCAAAGCCATCGCAATTGCCAGCGACCTCAAGGATAGCTTTATTTCTCCATGTGGAGCCTGCAGGCAGTTCATGAGAGAGTTCGGCTCACAGTGGGAAGTTTATATGTCAAAATCTGATGGATCTCACGAGCTGATGACAGTGGAGGAGCTCCTGCCGCGTTCATTTGGCCCTGATGACCTGAAAATCGGAAAAGACCCTGTTGGCAATtcgaaaatgtaa

Function

NR:

description
PREDICTED: cytidine deaminase-like

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224320.1 True 462 mRNA 0.48 4 17784715 17786242

Neighbor

gene id symbol gene type direction distance location
pink1 pink1,LOC107714979,LOC107697909,LOC107751829 coding downstream 591 17778474 ~ 17784124 (-)
LOC122328974 agmat,LOC107714919,LOC102790280 coding downstream 6795 17773405 ~ 17777920 (-)
tmed4 tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037 coding downstream 346702 17433732 ~ 17438013 (-)
racgap1 racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350 coding downstream 423331 17354147 ~ 17361384 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding downstream 433767 17344102 ~ 17350948 (-)
LOC122328417 LOC107563141,LOC107563138,LOC107664227,LOC107751839,LOC107599502,LOC107714980,LOC107664226,LOC107563140 coding upstream 1355 17787597 ~ 17788930 (-)
LOC122328416 LOC107599143,LOC107697854,LOC107751854,LOC107714945,LOC107563142,LOC107664148 coding upstream 2738 17788980 ~ 17796430 (-)
fam43b fam43b,LOC107563144,LOC107714947,LOC107664143,LOC107697855,LOC107577211 coding upstream 48601 17834843 ~ 17836972 (-)
vwa5b1 vwa5b1,LOC107706959,LOC107714920,LOC107664114,LOC107563127 coding upstream 92825 17879067 ~ 17914537 (-)
ubxn10 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 coding upstream 136345 17922587 ~ 17924503 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding downstream 36213 17746530 ~ 17748502 (-)
G158632 NA non-coding downstream 389293 17394021 ~ 17395422 (-)
G158628 NA non-coding downstream 398161 17383342 ~ 17386554 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding downstream 445796 17311328 ~ 17338919 (-)
G158605 NA non-coding downstream 493172 17289971 ~ 17291543 (-)
LOC122328377 NA non-coding upstream 13600 17799842 ~ 17844102 (-)
G158774 NA non-coding upstream 157683 17943925 ~ 17944160 (-)
G158887 NA non-coding upstream 213591 17999833 ~ 18001690 (-)
G158892 NA non-coding upstream 225884 18012126 ~ 18015877 (-)
G158882 NA non-coding upstream 255668 18041910 ~ 18043476 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 362198 17413703 ~ 17422517 (-)
G158609 NA other downstream 441330 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 600330 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1426010 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1541320 16240810 ~ 16243395 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 259684 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 445401 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 509804 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 556092 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 961149 18747391 ~ 18754712 (-)

Expression


Co-expression Network