bgnb (bgnb,LOC107737601,LOC107672034,LOC107560944,LOC107699588,LOC107712721)


Basic Information

Item Value
gene id bgnb
gene name bgnb,LOC107737601,LOC107672034,LOC107560944,LOC107699588,LOC107712721
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11881386 ~ 11900643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224343.1
CCCAAACCCCCTTTCCTCCAGCTCTCCGCCTCACTGACAGATACAGGCGGGAGTTAGTTAAGACAGTTAAAACTAGAACACCAAGTCACACCGAAGAGAATATATGTTGCAAAACCCAAATAGCAAACTCGAAAGGTAAATACGGTTGCAGGAGTGTGGAAATATTGCAGCTCAGATTAAGgtctgtgtgtgtgagtctctgtATCTCTGCGATGTTCCCCTGTCACTCTCTCCTGCTTCTGCTGCTCAATGTCTGCAGCCTGACTGCTCCCTCATTGGCTCTGCCTTTTGAGCAGAGAGGATTCTGGGACTTTGCTATGGATGGAGAAATGGGAGATTTGACGACCGTAATGATGAGAGATGAAGAAGGTTCTGCTGTGGAGGAGCTGCCGCCGGATGTGTTTTCATGTCCCTTTGGCTGCCATTGTCAGCTCCATGTGGTGCAGTGCTCAGACCTGAGTTTGATCGCAGTGCCCAAGGAAATTCCCAGAGACACCAAACTCCTGGACCTGCAGAACAACCGCATCACAGAACTGAAGGAGAATGACTTCAAAGGACTTTCTAACCTCTATGCTCTGTCACTGGTCAACAACAAGATCTCCAAAGTCCACCCGCGAACCTTCGCACCCCTCCTACACttaaaaaagctgtatttttccCATAACCTCCTGACAGTGGTACCCAAAAACCTTCCCCCATCCCTGGTAGAGCTGCGCATTCATGACAACCGTATTAAGAAGGTTGCAGAAGGAACGTTCTCTGGTCTGGGCAGCATGAACTGCATTGAGATGGGCGGAAACCCTATTCAGAACAGCGGCTTTGAGCCTGGTGCTTTCAAAGGCCTGAAACTCAACTACCTGCGCATCTCTGAGTCCAAACTCACTGGAATACCAAAAGACCTCCCTGACAGTCTTCATGAGCTCCACTTGGACAATAACCAGATCCAGGCCATTGAACTAGAGGACCTGAGCCGCTATAAACACCTGTACAGATTGGGTCTGGGTTTCAACCACATCCGGATGATTGAGAACGGCAGCCTATCATACGTCCCTAATCTCAGGGAGCTGCATTTGGAAAACAACCGGCTGACCCGCGTCCCCATGGGTATGCCAGACATGAAGTACCTGCAGGTGCTCTACCTTCATTCCAACAACATAAGTCGAGTGGATGTTAATGACTTCTGCCCTCGGGGTTTCGGCATGAAGAGGAGCTTCTATAATGGCATTAGCCTCTATGGCAACCCGGTTAACTACTGGGAGGTGCAGCCCGCCACCTTTCGCTGCGTTGGAGACCGACTGGCCATTCAATTCGGAAACTATAAGAAGTAGAGaatggatgaaaagagagatcTGGGGACAAATAACAATGCTGGaattaaaacagaacagaaaaaactTGGAGAAAGTGGGCCAAAATGGTGTCAACAAACAGTATTTGcgaatcatttttattatgcatcttTGGATATATTCGTTTATGAAGCCTAAAGGTTGACACCAAGTATGTTAACTATACTGATAAAGATAGCACAGTCCACACCGCGACTATAACAATACGGTTTGTTGGAATAACTATCAGGCTGATTTTATTCAACTggtgaatgataaaaacataacagccaatcagaatccacaTTTTAAAGAGCTCAAGTATTTAAAGGGGCAGACGGCAAAACTGCTGCAGGTTTATAATGAACAGAACGTAACCATCTGtgaatgttaatataattatcgttatctttatagttatcataCTTGATAagaacagcaataaaaataagtaataagtttaaatttaaactcGCACAACTGGCTCAAAACCattgttttacagtaaagtcTTAACATTATCAATTCACTTTTTAAGGGCTCTTTGTTTTCTCGacacttttataataatattgatatGTACTGttatattgtgattattttatattagttaatgttgttttttaacagtGAAGTTTGGATGGGATGTTGAAATAGAAAGGTTAAATCTAGATGTTAAATCATGGTGCTTATAATAATCTGtgttgtttgtaaaaaaaaattgtagcttgctttttttctccttttttaccTTGCTTCCTTGCTTCAGGGGTCTTATTGTTGTGGGAGTACTTTTAGGGCAATGGATTCAAATTTCATTCAGCCGTATGCTTCATGCTCTTACCCAGCCCTTTTGGGTTAGAGGCTGATTCAGAAAAGGATTGTAATGCTATGTTGTTTTGCACAGTTTCTTTATGAATTTCAAATCTTTTCTTTGTAGCGTATtgtttttctcatgttttcttTGGCAGTGACCCTGCATGCATTTAGGCTAGTGTGCCGCACACTACTGCATGTCCCAATAAAAATATGTCTTCAGGAGCAGACGTGGCGTACCATCGTGGTTTGAAAGCTGTGACTAATAAAACTTGAGTTAACACGAGTTTGATGAGTtcagtgaaataaaacatttgcagtGCTCTCTTTGTTAAACAAGAAtgtctcctcttttttttttttcaataaagccAAATATTGATTGATAGCATTATCGAGCACATTGTCAGTGGGTCACTCTACTTGATGCAAACTTTACAAAATTACAGATTTTATGCAcgacaaaaataaaacctacaATTAATAAAA
>XM_043224344.1
GGGCAGAAGATATGAGAGGAACACACATAGATGTTGGCATGTCAGGATGAAGAATGGGATTCCACTGGATACTTTAGGCTTTAATGCCTACCTTGGATGAACTGATATTTAGCAAATGTTTGGATCAGCGACATATGGTCAGCTCTGGGAACTGTCAGGCACCGTGAcaaatttttaatgtaaatgtctgtTTGTAGTCATTTCAGAGATCTTTCTGTTGCCTCAGACCTTGACAACAAGCGTGAATGTTCACAGAAGATGATTGAGGAGTAGCCAAGGGGAACGGCAAAAGTATCCATGCTCATTACTCAGTTAATGACACAGACGCTGTGTGAGATGGGAGACATAAAGGACTCAACGGACACATTTACATGAGCAGCGTTTGTGTGAGATCCCTCTAAGCTTAATGGAAGTCTTTACTgtctgtgtgtgtgagtctctgtATCTCTGCGATGTTCCCCTGTCACTCTCTCCTGCTTCTGCTGCTCAATGTCTGCAGCCTGACTGCTCCCTCATTGGCTCTGCCTTTTGAGCAGAGAGGATTCTGGGACTTTGCTATGGATGGAGAAATGGGAGATTTGACGACCGTAATGATGAGAGATGAAGAAGGTTCTGCTGTGGAGGAGCTGCCGCCGGATGTGTTTTCATGTCCCTTTGGCTGCCATTGTCAGCTCCATGTGGTGCAGTGCTCAGACCTGAGTTTGATCGCAGTGCCCAAGGAAATTCCCAGAGACACCAAACTCCTGGACCTGCAGAACAACCGCATCACAGAACTGAAGGAGAATGACTTCAAAGGACTTTCTAACCTCTATGCTCTGTCACTGGTCAACAACAAGATCTCCAAAGTCCACCCGCGAACCTTCGCACCCCTCCTACACttaaaaaagctgtatttttccCATAACCTCCTGACAGTGGTACCCAAAAACCTTCCCCCATCCCTGGTAGAGCTGCGCATTCATGACAACCGTATTAAGAAGGTTGCAGAAGGAACGTTCTCTGGTCTGGGCAGCATGAACTGCATTGAGATGGGCGGAAACCCTATTCAGAACAGCGGCTTTGAGCCTGGTGCTTTCAAAGGCCTGAAACTCAACTACCTGCGCATCTCTGAGTCCAAACTCACTGGAATACCAAAAGACCTCCCTGACAGTCTTCATGAGCTCCACTTGGACAATAACCAGATCCAGGCCATTGAACTAGAGGACCTGAGCCGCTATAAACACCTGTACAGATTGGGTCTGGGTTTCAACCACATCCGGATGATTGAGAACGGCAGCCTATCATACGTCCCTAATCTCAGGGAGCTGCATTTGGAAAACAACCGGCTGACCCGCGTCCCCATGGGTATGCCAGACATGAAGTACCTGCAGGTGCTCTACCTTCATTCCAACAACATAAGTCGAGTGGATGTTAATGACTTCTGCCCTCGGGGTTTCGGCATGAAGAGGAGCTTCTATAATGGCATTAGCCTCTATGGCAACCCGGTTAACTACTGGGAGGTGCAGCCCGCCACCTTTCGCTGCGTTGGAGACCGACTGGCCATTCAATTCGGAAACTATAAGAAGTAGAGaatggatgaaaagagagatcTGGGGACAAATAACAATGCTGGaattaaaacagaacagaaaaaactTGGAGAAAGTGGGCCAAAATGGTGTCAACAAACAGTATTTGcgaatcatttttattatgcatcttTGGATATATTCGTTTATGAAGCCTAAAGGTTGACACCAAGTATGTTAACTATACTGATAAAGATAGCACAGTCCACACCGCGACTATAACAATACGGTTTGTTGGAATAACTATCAGGCTGATTTTATTCAACTggtgaatgataaaaacataacagccaatcagaatccacaTTTTAAAGAGCTCAAGTATTTAAAGGGGCAGACGGCAAAACTGCTGCAGGTTTATAATGAACAGAACGTAACCATCTGtgaatgttaatataattatcgttatctttatagttatcataCTTGATAagaacagcaataaaaataagtaataagtttaaatttaaactcGCACAACTGGCTCAAAACCattgttttacagtaaagtcTTAACATTATCAATTCACTTTTTAAGGGCTCTTTGTTTTCTCGacacttttataataatattgatatGTACTGttatattgtgattattttatattagttaatgttgttttttaacagtGAAGTTTGGATGGGATGTTGAAATAGAAAGGTTAAATCTAGATGTTAAATCATGGTGCTTATAATAATCTGtgttgtttgtaaaaaaaaattgtagcttgctttttttctccttttttaccTTGCTTCCTTGCTTCAGGGGTCTTATTGTTGTGGGAGTACTTTTAGGGCAATGGATTCAAATTTCATTCAGCCGTATGCTTCATGCTCTTACCCAGCCCTTTTGGGTTAGAGGCTGATTCAGAAAAGGATTGTAATGCTATGTTGTTTTGCACAGTTTCTTTATGAATTTCAAATCTTTTCTTTGTAGCGTATtgtttttctcatgttttcttTGGCAGTGACCCTGCATGCATTTAGGCTAGTGTGCCGCACACTACTGCATGTCCCAATAAAAATATGTCTTCAGGAGCAGACGTGGCGTACCATCGTGGTTTGAAAGCTGTGACTAATAAAACTTGAGTTAACACGAGTTTGATGAGTtcagtgaaataaaacatttgcagtGCTCTCTTTGTTAAACAAGAAtgtctcctcttttttttttttcaataaagccAAATATTGATTGATAGCATTATCGAGCACATTGTCAGTGGGTCACTCTACTTGATGCAAACTTTACAAAATTACAGATTTTATGCAcgacaaaaataaaacctacaATTAATAAAA

Function

symbol description
bgnb Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including alar plate midbrain region; central nervous system; neurons; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia. Orthologous to human BGN (biglycan).

NR:

description
biglycan-like

GO: NA

KEGG:

id description
K08118 BGN; biglycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224343.1 False 2633 mRNA 0.42 8 11881386 11900643
XM_043224344.1 True 2873 mRNA 0.42 8 11881386 11892786

Neighbor

gene id symbol gene type direction distance location
b4galt3 LOC107737602,LOC107593408,LOC107672040,LOC107699583 coding downstream 869 11868442 ~ 11880517 (-)
ccnq fam58a,LOC107737713,LOC107671950,LOC107560943,LOC107699584,LOC107593410,LOC107712723 coding downstream 14815 11861887 ~ 11866571 (-)
LOC122329113 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107737609,LOC107576394 coding downstream 73997 11806356 ~ 11807389 (-)
haus7 LOC107737606,LOC107712722,LOC107560873,LOC107671952,LOC107593450 coding downstream 76246 11801778 ~ 11805140 (-)
LOC122329333 NA coding downstream 138583 11742670 ~ 11742803 (-)
si:dkey-32e6.6 si:dkey-32e6.6,LOC107671966,LOC107737599,LOC107712720,LOC107593446,LOC107699569,LOC107568835 coding upstream 6056 11906699 ~ 11919506 (-)
tktb tktb,LOC107737598,LOC107568840,LOC107671986,LOC107712719,LOC108410447,LOC103046877 coding upstream 24302 11924945 ~ 11933113 (-)
lrrc23 LOC107737597,LOC107671988,LOC107568844,LOC107699590,LOC107712718,LOC107593427 coding upstream 33684 11934327 ~ 11936611 (-)
si:dkey-32e6.3 si:dkey-32e6.3,LOC107568841,LOC107737596,LOC107671987,LOC107712717,LOC107593405,LOC107699565,LOC107699564 coding upstream 36193 11936836 ~ 11940344 (-)
usp19 LOC107737595,LOC107671985,LOC107568839,LOC107712698,LOC107699591 coding upstream 40471 11941114 ~ 11961105 (-)
G156972 NA non-coding downstream 29676 11793603 ~ 11851710 (-)
G156971 NA non-coding downstream 99020 11781567 ~ 11782366 (-)
G156962 NA non-coding downstream 118363 11762440 ~ 11763023 (-)
G156812 NA non-coding downstream 341341 11539623 ~ 11540045 (-)
LOC122328925 NA non-coding downstream 504698 11376177 ~ 11376688 (-)
G156978 NA non-coding upstream 154603 12055246 ~ 12061368 (-)
G156973 NA non-coding upstream 160804 12061447 ~ 12064715 (-)
G157012 NA non-coding upstream 198324 12098967 ~ 12099726 (-)
G157035 LOC107737586,LOC107672037,LOC107712704 non-coding upstream 250717 12151360 ~ 12156300 (-)
G157036 NA non-coding upstream 256759 12157402 ~ 12158314 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 23418 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 79754 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 134766 11741400 ~ 11746620 (-)
LOC122329329 NA other downstream 135991 11745262 ~ 11745395 (-)
G156746 NA other downstream 776163 11100744 ~ 11105223 (-)
G156985 NA other upstream 22201 11922844 ~ 11924650 (-)
G157367 NA other upstream 1240435 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 1379613 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 2322166 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 2426323 14326966 ~ 14330784 (-)

Expression


Co-expression Network