ccnq (fam58a,LOC107737713,LOC107671950,LOC107560943,LOC107699584,LOC107593410,LOC107712723)


Basic Information

Item Value
gene id ccnq
gene name fam58a,LOC107737713,LOC107671950,LOC107560943,LOC107699584,LOC107593410,LOC107712723
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11861887 ~ 11866571 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224345.1
GCTCAGGTGACTCTTCCCGTACGTGGGGGGCGCTAGAGACCGTTGAGCGCCATGTTGCACGCTAAACGATCCGCTGAAGGAAAGTCACAAGCTCTCTGCACGGCGTTGCATTTGGACAACCCATTTATATACAAATGGAGGAGTTACAAGCCGTAAAATGAGCACGCAGGCGTCAACATCTGGATCCGTCAATGAGGCGAGAGGTAGAAGTGCTCAAGATATGGAAGACTCCAAAACACACTTCAGAGTCTGTCGGTTTATCATCGAGACGGGAGTGAAGTTAGGCATGAGATCTGTGCCCATGGCTACAGCATGTGTGCTGTATCACAGGTTCTTCCAGTCTGCCAGTCTACAGGTCTATGAGCCTTACCTAGTGGCCATGTCTGCCATCTACCTCGCGGGCAAAGTAGAAGAGCAGCATCTCAGAACTAGGGACATCATCAATGTCTGTCACAGGTATTTTCACCCAGAGAGTGAACCTATGGAACTGAATGGGAAGTTTTGGGAGTTGCGGGACAGTATAGTACAATGTGAGCTCCTTATCCTTCGACAGCTTAACTTCCAAGTGTCCTTTGAGCATCCACATAAGTACGTGCTGCACTACCTGCTCTCGGTGAGGAGTCTTTTGAATCGTCACGCCTGGTCTCGAACCCCCATTGCAGAGACGGCCCTGGCTGTGTTAAAAGACAGTTACCACGGCTCTGTGTGTGTCCGCCATAAGCCTCAACACCTTGCCCTCACCTCCCTCTACCTCGCTCTCCAGACATATGGAGTGCAGCTCCCCAGAGGAGAACTGGAGTGGTGGCAGGTTGTTTGTGCAGACATCACCAAGGCTCAGATTGAGACCATCATGAGTGAGTTACTGCAGCTCTACGACATGGAGGCCAAGTGTACCTGAGAGACAACGAATGAAGCGGTACTAAAACACTGGCGCGGAAACCAACATCTTCAGCCGAATCTGTATCTGACGATCATCTTAACACATGCATTGAACCCTTTTTCTCCTGATGTTGCGACGTAACCTAATGAGCTCTGCTTGTTAATTACATTACAGAACATGAAGGTTTAGAAAGGCTCGTCAGGAATGATGAGAGGAATTTCGATATAGAAGCAGGCTTTGTAAGTGGTGCTATGAAAACCAGACTTTAGCCACACCGCATCAATCAATTCCCAGCCACCGACCTACTTTCTTCTCCTACCTTGTGCTATTTTTCCCCttaaagagggagagagaaattACAAAAGAGATGGAATAGCTGGTTGAAGGAAGAATGAAACAAAAGAAGAGCCATCCTGTCCCCAGAGCTAAATTCTGAGGTAAACGCTAGATCTGAgccttttcttttatattttctaatttaattactCTCCTCCTCTCCCTACAGAACTTGTCCCGGTAGGATTCTTTATGTAACTCCTTAAAGCAGTATTACTGTAAAGCACCACAGTTTTATTAGATACCACACTTCTatttcaaacttcaaaaacacTTCACTGACGTAAACTTTCCATAGTCTTAGCTAAAGATGAACGGCAGTTTCATTCTAagactatatttaaaaatgtaattacaaataaaaatgttttttgcaccAA

Function

symbol description
fam58a cyclin-Q

NR:

description
cyclin-related protein FAM58A

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23964 CCNQ, FAM58A; cyclin-Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224345.1 True 1596 mRNA 0.46 6 11861887 11866571

Neighbor

gene id symbol gene type direction distance location
LOC122329113 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107737609,LOC107576394 coding downstream 54498 11806356 ~ 11807389 (-)
haus7 LOC107737606,LOC107712722,LOC107560873,LOC107671952,LOC107593450 coding downstream 56747 11801778 ~ 11805140 (-)
LOC122329333 NA coding downstream 119084 11742670 ~ 11742803 (-)
LOC122328548 LOC107560872,LOC107712665,LOC107737683,LOC107671934 coding downstream 124302 11736897 ~ 11737585 (-)
ognb zgc:193598,LOC107671963,LOC107737613,LOC107570281,LOC107699558 coding downstream 126941 11732231 ~ 11734946 (-)
b4galt3 LOC107737602,LOC107593408,LOC107672040,LOC107699583 coding upstream 1871 11868442 ~ 11880517 (-)
bgnb bgnb,LOC107737601,LOC107672034,LOC107560944,LOC107699588,LOC107712721 coding upstream 14815 11881386 ~ 11900643 (-)
si:dkey-32e6.6 si:dkey-32e6.6,LOC107671966,LOC107737599,LOC107712720,LOC107593446,LOC107699569,LOC107568835 coding upstream 40128 11906699 ~ 11919506 (-)
tktb tktb,LOC107737598,LOC107568840,LOC107671986,LOC107712719,LOC108410447,LOC103046877 coding upstream 58374 11924945 ~ 11933113 (-)
lrrc23 LOC107737597,LOC107671988,LOC107568844,LOC107699590,LOC107712718,LOC107593427 coding upstream 67756 11934327 ~ 11936611 (-)
G156972 NA non-coding downstream 10177 11793603 ~ 11851710 (-)
G156971 NA non-coding downstream 79521 11781567 ~ 11782366 (-)
G156962 NA non-coding downstream 98864 11762440 ~ 11763023 (-)
G156812 NA non-coding downstream 321842 11539623 ~ 11540045 (-)
LOC122328925 NA non-coding downstream 485199 11376177 ~ 11376688 (-)
G156978 NA non-coding upstream 188675 12055246 ~ 12061368 (-)
G156973 NA non-coding upstream 194876 12061447 ~ 12064715 (-)
G157012 NA non-coding upstream 232396 12098967 ~ 12099726 (-)
G157035 LOC107737586,LOC107672037,LOC107712704 non-coding upstream 284789 12151360 ~ 12156300 (-)
G157036 NA non-coding upstream 290831 12157402 ~ 12158314 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 3919 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 60255 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 115267 11741400 ~ 11746620 (-)
LOC122329329 NA other downstream 116492 11745262 ~ 11745395 (-)
G156746 NA other downstream 756664 11100744 ~ 11105223 (-)
G156985 NA other upstream 56273 11922844 ~ 11924650 (-)
G157367 NA other upstream 1274507 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 1413685 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 2356238 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 2460395 14326966 ~ 14330784 (-)

Expression


Co-expression Network