si:dkey-32e6.6 (si:dkey-32e6.6,LOC107671966,LOC107737599,LOC107712720,LOC107593446,LOC107699569,LOC107568835)


Basic Information

Item Value
gene id si:dkey-32e6.6
gene name si:dkey-32e6.6,LOC107671966,LOC107737599,LOC107712720,LOC107593446,LOC107699569,LOC107568835
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11906699 ~ 11919506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224347.1
cTGCTGACAAAGAGAGAATTTAAGAGGGCAGCTGGAGGTGAGCCTGCAGGTACATGGTGAGCGTCTGAGCAGATCGGATAAGAATCATGCAGGCTCTTTTGGTGTTTTGCGTGTGCTTAGGAGCTTTATCTGTGGAAGGACAAGTCCTGGATGGACTGAATTCACTCTTCACATTTATAACTGAGACAGATGTTTCACCCTCGCAGCATCAACCGGTGGATTCTTCATCAGCATCAAGTGAAAAAGGAACCAATGATGTACAAAGAACAAGCCAAGTAAGCGACGCTGCTACAGACACGCAGTCAGTTATGGGGCGAGCTGAGGCTGTGTGGGTGGAGCTCAATGCTGTGTTGGAGAGATGGGGTGGAGCGGCGGGGAAACTGAATACAATCTTGAAGGAACTCAAAGAGGAGAAAAAACGCCTCTTGGATCAAGGGGAAGAGCAGAAACCaaagaaaaaggaggaggaagaggatgaggatgaagaggaagaggatgatgatgaggaggaggaggaagaagaagaggaggaggaagaggaagaagaagaaggaggagaggaggaaggAAAGGAAGAAGAGACAGCCGAAGAAGAGGAGAATGATGCATCTAACAGCACCTCCACCCAAGACTCATTACCAGAAGGCTGCCAAGTGGGAGAAGGTCGAGTATCCTGCAAGCAGATTGGCTTGTCCCAACTACCAGACATCACAAACGAGGAAGTCACCATACTTGAACTGCCTGGGAATAACTTAACAAGAATTCCTCCCAGTGGTTTTTCCGGGCTGCCAGATCTTGAAGAGCTTGACCTAAGTTTGAACAAGCTGGACGACTTCTCTTTCGACCTAAATCTCTTCACGAATCTTACAAAGCTGAAAATTCTGAAACTTGATGGCAATGAACTTACAACAGTTCCACAGTTGCCATCTTCTTTGGAGAATCTGAAGATAAACAACAATAGATTAAACCAACTGGCTTCACACAGCTTCACagGGTTGCTTAACCTACAAGTGTTAGAGCTGACAGGAAATATCCTGTATGAGAGCAGCATTGCACCCTGGGCTTTCAAACCTCTGAAGGCACTCAAGTTTTTACGACTGGATAAAAACAGATTCAGTGGTATCCCAGCAGGCTTGCCCCGGTTGCAGGACAATCAAATAGTGGAGGTGCAAGACAGGCTTTTGGATAAGTGTGTCCACTTGAAGGTGTTAGATCTCAGCCATAACCTCCTAAAAGAGAACAGCATCTACCCTGAGGCCTGGATCAAGCTGCGGAAGCTGGAAACTCTTGATCTGTCCCATAACCAGATGGCAGTGGTGCCCTCAGATCTGCCCCGGGCCTTGCGCCTACTCTCTCTGCAGCACAATCACATTCACTCCATTCCTCCATACTCACTGAGTCACCTCCGCCCAGGCTTACGGTCCCTACACCTCTCCCACAACCTGTTAGAAGAGCACGGTGTGCTGGGGAAGTCATTTCGTGGTGTTTATCAAACTCTGGAGGAGTTACACTTGGACAACAACAGGTTTCAGAGGGTGCCACACAATATGCGCCATTTCAAGAACCTCAAGCTACTGCGTCTAGACCACAACCGTATAAGCTCCGTCCCAGTGAAATCAATCTGTAAGGTTAAAAGGACTGAGGATTCTCCCCTGTCAGCTGTCCATTTAGAGTACAACTACATCAATGTGATGAAAATCCCTCGTGCTGCTTTCTCCTGCATTCGGGATTCCAACAAGATCATACTGGATCCTCAGAGCCAAACACAGGGCTAGTAAACACCCTGTCACTTGAATCCTCCCCTCTGCGTCTCCTGTCAGTCACTCTaagattaaatactgtaaacacCATGTCCATTAAATCTATTAATAGTGTGCATGCTTCCTCTCCAAATGCACATTCGGGTCACGTTCGGCAACCTGTagcatataatacattattCTGTATGTAATAAACATTCTTCTTATaagcttttgaaacaaaaaaaactgaatctgaaaaaaaaaaatctgatgccTTTCTACAATATTCATTTAGCATCTGCAgtgattttgttattatatactttcgtatttatatttgtgttgtattattttaaatcatcttCTGAtgtcacattaaaacacattaatgtctaaaatgaaacaaattcatgtctaaaatgaaatgttttagtaaatataAGTCTAAATGTACACAATTACCGCAA

Function

symbol description
si:dkey-32e6.6 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix.

NR:

description
extracellular matrix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224347.1 True 2209 mRNA 0.44 9 11906699 11919506

Neighbor

gene id symbol gene type direction distance location
bgnb bgnb,LOC107737601,LOC107672034,LOC107560944,LOC107699588,LOC107712721 coding downstream 6056 11881386 ~ 11900643 (-)
b4galt3 LOC107737602,LOC107593408,LOC107672040,LOC107699583 coding downstream 26182 11868442 ~ 11880517 (-)
ccnq fam58a,LOC107737713,LOC107671950,LOC107560943,LOC107699584,LOC107593410,LOC107712723 coding downstream 40128 11861887 ~ 11866571 (-)
LOC122329113 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107737609,LOC107576394 coding downstream 99310 11806356 ~ 11807389 (-)
haus7 LOC107737606,LOC107712722,LOC107560873,LOC107671952,LOC107593450 coding downstream 101559 11801778 ~ 11805140 (-)
tktb tktb,LOC107737598,LOC107568840,LOC107671986,LOC107712719,LOC108410447,LOC103046877 coding upstream 5439 11924945 ~ 11933113 (-)
lrrc23 LOC107737597,LOC107671988,LOC107568844,LOC107699590,LOC107712718,LOC107593427 coding upstream 14821 11934327 ~ 11936611 (-)
si:dkey-32e6.3 si:dkey-32e6.3,LOC107568841,LOC107737596,LOC107671987,LOC107712717,LOC107593405,LOC107699565,LOC107699564 coding upstream 17330 11936836 ~ 11940344 (-)
usp19 LOC107737595,LOC107671985,LOC107568839,LOC107712698,LOC107699591 coding upstream 21608 11941114 ~ 11961105 (-)
lamb2 lamb2,LOC107737594,LOC107672036,LOC107699592,LOC107712697 coding upstream 42353 11961859 ~ 11994891 (-)
G156972 NA non-coding downstream 54989 11793603 ~ 11851710 (-)
G156971 NA non-coding downstream 124333 11781567 ~ 11782366 (-)
G156962 NA non-coding downstream 143676 11762440 ~ 11763023 (-)
G156812 NA non-coding downstream 366654 11539623 ~ 11540045 (-)
LOC122328925 NA non-coding downstream 530011 11376177 ~ 11376688 (-)
G156978 NA non-coding upstream 135740 12055246 ~ 12061368 (-)
G156973 NA non-coding upstream 141941 12061447 ~ 12064715 (-)
G157012 NA non-coding upstream 179461 12098967 ~ 12099726 (-)
G157035 LOC107737586,LOC107672037,LOC107712704 non-coding upstream 231854 12151360 ~ 12156300 (-)
G157036 NA non-coding upstream 237896 12157402 ~ 12158314 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 48731 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 105067 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 160079 11741400 ~ 11746620 (-)
LOC122329329 NA other downstream 161304 11745262 ~ 11745395 (-)
G156746 NA other downstream 801476 11100744 ~ 11105223 (-)
G156985 NA other upstream 3338 11922844 ~ 11924650 (-)
G157367 NA other upstream 1221572 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 1360750 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 2303303 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 2407460 14326966 ~ 14330784 (-)

Expression


Co-expression Network