ap4b1 (ap4b1,LOC107697033,LOC107672998,LOC107566065)


Basic Information

Item Value
gene id ap4b1
gene name ap4b1,LOC107697033,LOC107672998,LOC107566065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3474016 ~ 3482861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224364.1
CTTGGCCTTCGCGCTTCCTGATTGACGTAAATACTCTCCGATGGATGCTAAGAAATATTCAGATCTCACTGTTATTTTTAGATGGTTGTGTGTTGAGTCAATTTTTTAAGGTGATACAGGAGGCACCTGAAAACCCCACAATGCCTTATTTTGGCTCGGAGGAGACGGTGAAAGAGCTCAAGCGAGCACTGTCCAATCCAAACGTTCAAGCAGACCGCCTCCGCTACAAAAACTACATCACCAAAGTCATCAGGTACATGAcacagggcctggatgtctctGCTTTATTTATGGACATGGTGAAAGCGAGTGCTACGGTGGATATTGTTCAGAAGAAGCTGGTTTATCTGTACATGTGCACCTATGCCAGTGACAAGCCTGACCTGGCTCTGCTGGCCATCAACACGCTCCGCAAGGACTGCGCTGATCCCAATCCCATGGTGCGAGGGTTGGCCCTGAGGAACATGTGCAACTTCAGGATGCCGGGGATGACAGAGTACATAGAGCAGCCCATTGTTGCTGGTCTGCAGGACAAGGCCAGTTACGTAAGGAGAGTCGCCGTGCTCGGCTGCGCCAAAATGCACAGCCTGCAGCCCAACAACGAGATCGACGGCGCTGTAGTGAACGAGCTGTACGCGCTCCTGAGGGACTCGGACCCCGTGGTTGTAGTGAACTGCCTTCGAGCTTTGGAGGAGATTCTCAAAGATGAGGGTGGTGTGGTTATTAACAAACCCATTGCTCATCATCTTCTCAACAAAATGAAGGACCTGGACAGTTGGGCTCAGAGTGAAGTCCTCACCTTCCTGCTGCGCTATCGTCCTCGCAGCGACGACGAGTTGTTTGACATCCTCAGCCTGCTAGACGCCTTCCTCCAGAGCGCTCACGCGCACGTGGCGGTATCCACGCTCCGCCTCTTCCTTCACCTGGCCGCCGCCCACCCGGCCGTGCAGGCCGACGCCCTCCTGCGCTCGATCGCGCCCCTGCTGGCCGCTTGCGGCGCCGCGTCCCGTGAGCTCCGCTTCGCCGGCCTCTGTCACGTACAGCAGGTCATGCGGAGTCAGCCGGGCCTGTTCGGCACGCAGTACAAACGCTTCTTTTGTGGGTACTCTGAACCCGGTTACATTAAGTTTCGCAAGATGGAGatcctggtggagctggtgaaTGATGAAAACGTGGCTTTGGTTTTGGAGGAGCTGAGAAGCTACTGCACCGATGTGTCTCCCGAACTGGCCCAGGCAGCCATTGCCGCTATCGgaCGTATTGCACGAACATACAGTGAAAAGTGTCTGCATATCCTGACCGGACTGCTGGCTCTGAAACAGGATCACATCACGTCAGccgTGATCCAGACGTTCAGGGATTTGGTGTGGTTCTGTCCTCAGAGTACGGCCGCCGTGTGTCAGACCGTCGAGGCTTGTGTTGACGGTCCTCAAGATAGCGAGGGAAAGCAGGCTCTGTTGTGGCTTTTGGGAGAACATGGCGATCAGATCAGCAGCGCCCCCTATGTGATGGAGGGCTACATAGACGGCCTGAAGACCGAGCTGTCTTCGGCCGTGAAGATGGAGCTGCTGAGCGCCTCGGTCAAGATGTTCCTGTGCCGCCCCGCCGAGACTCAAGACATGCTGGGACGTCTTTTACATTACTGTATTGAGGAAGAGAGCgacgtgtgtgtgcgtgaccGGGCTCTGCTGTACTACAGACTGCTCCAGCGGGGAGCTGAAGAGACGAGGAAGGTTGTAACCGGACCCAAATCTGATCCGTCCATGAGTGTTCTCACCGGACGCCAACAAGAGCCCATTAGTCAGTGGGCCTCTACCTTCAACACACTCGGCCCTCTGGCTGGACGCGACTTCTGCCTTCACACGGCCGCTCTACCAGCCGCCGGCCAGCCATCCAGCGGTGCAGAGAAGGAGCTGTTGCCAGAAAGTACAGATGTAACCCTCTCCAGCCCAGATGACACGGAAGAGGAGATCAGTCTATCTCTGGGTCCTCCTCTATCCCATGAGACTTTTGAGAAAATGTGGATGGACTTGGAGATTCTCCACACGCAAACTCTGGGTTGCCCCCGACCCAGATCGGCTCCGGATGCGTTGCAGGCTGCCTTACAGCTGGTGAAGATCCAGACTCTGGCCTTCACTCCGGGAGACACTGTGCCGTGGAAGGCCTACATCTACACCAGGAGCGCTGGGACCCTGATCCTCGCCGAGCTGCTGCAGGGGGAACCCCAGGGCCCCGGCCGTGATGAAAGCCTGCTGGTATCAGTCAAACAGCAGCCCGAAAACCAGCGTGCCACCAGAGGATTCGTTTCAATACTCAAGAGTGTGCTGCAGACTCTTAATGTTGACGGTTCATGATATTCAGAAGCTACTGCTATTGCTTTAAGGACGATGTGCAGTGTATTCCGGTACCCAAGCTGGAGCATCTCCAACTTTCTAAACACAAATGCCTACCAATAAAACAGTAGTTGGAATCACAGACCGTTTTTAGCACTTTACTGGTTTAAGCGCATTCAAATTTAGCACACGCGTcgaaataaatcatttctttgCAGGTATAAGGAAGTTCATCAGAAATAAGGAAGCTCAGAATTGCTTTTTCATGCAGGTTGCCCAACAGATCCGCGTTGTATGTCTCGCATGCTTTTCACAGaaatgtcaaacaacttataaaTGTGTGGCAGCGGTCTTCTGTGTTTATAACAGACCGAATTCCAGAGCGAAGCCGAGTTTTAATGGTGAAAGCGAGGTAAAGGCTACCACGGTCCACATATACAGAGATATACTGGTTTCTCAGTAACACCATGATAATAAACAAGTGTGACATTGA
>XM_043224365.1
CGCGCTTCCTGATTGACGTAAATACTCTCCGATGGATGCTAAGAAATATTCAGATCTCACTGTTATTTTTAGATGGTTGTGTGTTGAGTCAATTTTTTAAGGCACCTGAAAACCCCACAATGCCTTATTTTGGCTCGGAGGAGACGGTGAAAGAGCTCAAGCGAGCACTGTCCAATCCAAACGTTCAAGCAGACCGCCTCCGCTACAAAAACTACATCACCAAAGTCATCAGGTACATGAcacagggcctggatgtctctGCTTTATTTATGGACATGGTGAAAGCGAGTGCTACGGTGGATATTGTTCAGAAGAAGCTGGTTTATCTGTACATGTGCACCTATGCCAGTGACAAGCCTGACCTGGCTCTGCTGGCCATCAACACGCTCCGCAAGGACTGCGCTGATCCCAATCCCATGGTGCGAGGGTTGGCCCTGAGGAACATGTGCAACTTCAGGATGCCGGGGATGACAGAGTACATAGAGCAGCCCATTGTTGCTGGTCTGCAGGACAAGGCCAGTTACGTAAGGAGAGTCGCCGTGCTCGGCTGCGCCAAAATGCACAGCCTGCAGCCCAACAACGAGATCGACGGCGCTGTAGTGAACGAGCTGTACGCGCTCCTGAGGGACTCGGACCCCGTGGTTGTAGTGAACTGCCTTCGAGCTTTGGAGGAGATTCTCAAAGATGAGGGTGGTGTGGTTATTAACAAACCCATTGCTCATCATCTTCTCAACAAAATGAAGGACCTGGACAGTTGGGCTCAGAGTGAAGTCCTCACCTTCCTGCTGCGCTATCGTCCTCGCAGCGACGACGAGTTGTTTGACATCCTCAGCCTGCTAGACGCCTTCCTCCAGAGCGCTCACGCGCACGTGGCGGTATCCACGCTCCGCCTCTTCCTTCACCTGGCCGCCGCCCACCCGGCCGTGCAGGCCGACGCCCTCCTGCGCTCGATCGCGCCCCTGCTGGCCGCTTGCGGCGCCGCGTCCCGTGAGCTCCGCTTCGCCGGCCTCTGTCACGTACAGCAGGTCATGCGGAGTCAGCCGGGCCTGTTCGGCACGCAGTACAAACGCTTCTTTTGTGGGTACTCTGAACCCGGTTACATTAAGTTTCGCAAGATGGAGatcctggtggagctggtgaaTGATGAAAACGTGGCTTTGGTTTTGGAGGAGCTGAGAAGCTACTGCACCGATGTGTCTCCCGAACTGGCCCAGGCAGCCATTGCCGCTATCGgaCGTATTGCACGAACATACAGTGAAAAGTGTCTGCATATCCTGACCGGACTGCTGGCTCTGAAACAGGATCACATCACGTCAGccgTGATCCAGACGTTCAGGGATTTGGTGTGGTTCTGTCCTCAGAGTACGGCCGCCGTGTGTCAGACCGTCGAGGCTTGTGTTGACGGTCCTCAAGATAGCGAGGGAAAGCAGGCTCTGTTGTGGCTTTTGGGAGAACATGGCGATCAGATCAGCAGCGCCCCCTATGTGATGGAGGGCTACATAGACGGCCTGAAGACCGAGCTGTCTTCGGCCGTGAAGATGGAGCTGCTGAGCGCCTCGGTCAAGATGTTCCTGTGCCGCCCCGCCGAGACTCAAGACATGCTGGGACGTCTTTTACATTACTGTATTGAGGAAGAGAGCgacgtgtgtgtgcgtgaccGGGCTCTGCTGTACTACAGACTGCTCCAGCGGGGAGCTGAAGAGACGAGGAAGGTTGTAACCGGACCCAAATCTGATCCGTCCATGAGTGTTCTCACCGGACGCCAACAAGAGCCCATTAGTCAGTGGGCCTCTACCTTCAACACACTCGGCCCTCTGGCTGGACGCGACTTCTGCCTTCACACGGCCGCTCTACCAGCCGCCGGCCAGCCATCCAGCGGTGCAGAGAAGGAGCTGTTGCCAGAAAGTACAGATGTAACCCTCTCCAGCCCAGATGACACGGAAGAGGAGATCAGTCTATCTCTGGGTCCTCCTCTATCCCATGAGACTTTTGAGAAAATGTGGATGGACTTGGAGATTCTCCACACGCAAACTCTGGGTTGCCCCCGACCCAGATCGGCTCCGGATGCGTTGCAGGCTGCCTTACAGCTGGTGAAGATCCAGACTCTGGCCTTCACTCCGGGAGACACTGTGCCGTGGAAGGCCTACATCTACACCAGGAGCGCTGGGACCCTGATCCTCGCCGAGCTGCTGCAGGGGGAACCCCAGGGCCCCGGCCGTGATGAAAGCCTGCTGGTATCAGTCAAACAGCAGCCCGAAAACCAGCGTGCCACCAGAGGATTCGTTTCAATACTCAAGAGTGTGCTGCAGACTCTTAATGTTGACGGTTCATGATATTCAGAAGCTACTGCTATTGCTTTAAGGACGATGTGCAGTGTATTCCGGTACCCAAGCTGGAGCATCTCCAACTTTCTAAACACAAATGCCTACCAATAAAACAGTAGTTGGAATCACAGACCGTTTTTAGCACTTTACTGGTTTAAGCGCATTCAAATTTAGCACACGCGTcgaaataaatcatttctttgCAGGTATAAGGAAGTTCATCAGAAATAAGGAAGCTCAGAATTGCTTTTTCATGCAGGTTGCCCAACAGATCCGCGTTGTATGTCTCGCATGCTTTTCACAGaaatgtcaaacaacttataaaTGTGTGGCAGCGGTCTTCTGTGTTTATAACAGACCGAATTCCAGAGCGAAGCCGAGTTTTAATGGTGAAAGCGAGGTAAAGGCTACCACGGTCCACATATACAGAGATATACTGGTTTCTCAGTAACACCATGATAATAAACAAGTGTGACATTGA

Function

symbol description
ap4b1 Predicted to enable clathrin binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 47. Orthologous to human AP4B1 (adaptor related protein complex 4 subunit beta 1).

NR:

description
PREDICTED: AP-4 complex subunit beta-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12401 AP4B1; AP-4 complex subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224364.1 True 2826 mRNA 0.53 11 3474016 3482861
XM_043224365.1 False 2805 mRNA 0.53 11 3474025 3482861

Neighbor

gene id symbol gene type direction distance location
taf11 taf11,LOC107554211,LOC107566076,LOC107696971 coding upstream 40412 3431323 ~ 3433604 (+)
LOC122328845 LOC107554212,LOC107697038,LOC107571185,LOC107673381,LOC100001805,LOC107752455 coding upstream 121682 3319441 ~ 3352334 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding upstream 336038 3133531 ~ 3137978 (+)
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding upstream 480661 2989515 ~ 2993355 (+)
LOC122328866 LOC107709226,LOC107576631 coding upstream 485000 2983338 ~ 2989016 (+)
zgc:101663 LOC107709235,LOC107697032,LOC107566074,LOC107746337,LOC107554219,LOC107673483 coding downstream 151 3483012 ~ 3491622 (+)
LOC122328605 LOC107673498,LOC107746338,LOC107709218,LOC107554217,LOC107696970 coding downstream 11276 3494137 ~ 3496896 (+)
slc25a55b zgc:92113,LOC107746330,LOC107554216,LOC107709233,LOC107697031,LOC107673507 coding downstream 14145 3497006 ~ 3500981 (+)
LOC122329307 LOC107697030,LOC107711716,LOC107746331,LOC107673019,LOC100330283,LOC107598116,LOC104931868,LOC103360392 coding downstream 122395 3605256 ~ 3608341 (+)
kcna2b kcna2b,LOC107746332,LOC107711719,LOC107697029,LOC107673029,LOC107566069,LOC107598117,LOC108438074 coding downstream 145886 3628747 ~ 3631765 (+)
G154584 NA non-coding upstream 73258 3400009 ~ 3400758 (+)
G154582 NA non-coding upstream 78609 3394923 ~ 3395407 (+)
LOC122328887 NA non-coding upstream 158756 3314508 ~ 3315260 (+)
G154561 NA non-coding upstream 231294 3242215 ~ 3242722 (+)
G154517 NA non-coding upstream 267328 3206482 ~ 3206688 (+)
G154647 NA non-coding downstream 117581 3600442 ~ 3600856 (+)
LOC122329308 NA non-coding downstream 125502 3608363 ~ 3614844 (+)
G154661 NA non-coding downstream 151903 3634764 ~ 3636277 (+)
G154667 NA non-coding downstream 157002 3639863 ~ 3640681 (+)
G154673 NA non-coding downstream 174238 3657099 ~ 3657405 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 376981 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 463999 2995169 ~ 3010017 (+)
G154424 NA other upstream 517291 2923382 ~ 2956725 (+)
LOC122329169 NA other upstream 530210 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 1117289 2312722 ~ 2356727 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 211791 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1334504 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3109741 6592602 ~ 6598532 (+)
G155561 NA other downstream 3743133 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 3815499 7298360 ~ 7305534 (+)

Expression


Co-expression Network