ddx23 (ddx23,LOC107705733)


Basic Information

Item Value
gene id ddx23
gene name ddx23,LOC107705733
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4914490 ~ 4920882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224424.1
agactacatttcccataatcCATCACAGGAAGTCCGTCATATGTTGACGCCAAGCATAATGGCGGCTCAGTGAAACGCACAGGCTTCGCAAGCGACTTCATTTTGATCTGTTAAGATGGCGGGTGACTCATCTGATAAGAAGGACCTGGACACCGCGGGGAAGGAGCGGGAGTCTCGTAAGCGCAGTCGTTCTCGCTCCAGGGATCGGGATCGGGATCGGAAAGGGTCTCCCGGCAGAGAACGCAAACGGCACCGATCCCGTGAACGCAAGCGCTCCCGCAGCAGATCCAAATCTCCCGAGCGAGACCGTCGTCtaaaagataaagagagagacagagacagagacaaggACAGAGACAGGAGCCgcaaagacagagaaagagacagggaCAGACGGGACAAGGACCGGTCTAAGAAATCAAGgagcACTTCTCCTAAATCCAAGGATTTGAAAATAAAGAGGGAGAAGGATTtgaaaaaagaggaagaggaggaagatgagaagaagaaagagaagGTGCAGCCTCTTTCTCTTGAAGAACTGCTTGCTAAAAAGAAAGCGGAAGAAGAGGCAGAATCTAAGcCCAAGTTCTTGTCTAAAGCAGAGCGAGAAGCTGAGGCCATCAAACGCAGGGAGCTGATTGCAGAGGAGCGCCGCAGACAGCTGGACGAGGAAAGGAAGAAACGAAGAGTATTTCAGGACATTGGCAGGAAGATGCTAGAGGATCCTCAGGAGAGAGAACGGCGGGAAAGAAGGGAGCGGATGGAAAGAGAGAACAATGGCAATGATGAGGATGATGGGCGCCAGAAAAttagagaagaaaaagacaaaggaaAAGAACTGCAGGCCATAAAGGAGCGTTATCTTGGTGGTATGAAGAAACGGAGGCGTACCCGCCATCTGAATGACAGGAAGTTCGTCTTTGAGTGGGATGCATCTGAAGACACGTCAATCGACTACAATCCAATCTATAAAGAAAAGCATCAGGTTCAGCTGTATGGCCGAGGCTTCATCGCCGGCATCGACCTCAAGCAGCAGAAGAGAGATCAGTCCCGATTCTACGGAGACCTGATGGAGAAGAGAAGGACTCTTGAAGAGAAGGAGCAAGAGGAACAGAGGCTGAAGAAGGTCCGGAAGAAGGAGGCCAAGCAGCGCTGGGACGACCGGCACTGGTCTCAGAAGAAGCTTGATGagatgacagacagagactGGAGAATCTTCAGAGAGGACTACAGCATCACGACCAAAGGAGGAAAGATCCCCAACCCCATCCGCAACTGGAAGGAGTATTCCCTGCCGCCACACATTCTGGAGGTCATCGAAAAGTGCGGCTATAAGgATCCCACGCCTATCCAGAGGCAGGCCATTCCTATTGGTTTACAGAACCGTGACATCATCGGTGTGGCCGAGACTGGTAGTGGTAAAACCGCCGCCTTCCTCATTCCTTTATTGGTCTGGATCACCACTCTACCTAAGATTGACAGGATCGAGGACTCCGATCAGGGACCGTATGCCATCATTCTGGCCCCCACTCGTGAGCTGGCACAGCAGATAGAGGAGGAGACGATTAAATTTGGCAAACCGCTGGGGATCCGGACAGTGGCTGTGATCGGTGGAATATCCAGAGAGGATCAAGGGTTCAAACTCAGGATGGGTTGTGAGATTGTTATAGCCACACCCGGTCGTTTGATCGACGTCTTGGAAAACCGATACCTCGTCCTGAGCAGATGCACATATGTGGTACTGGATGAAGCTGACAGAATGATTGACATGGGCTTTGAACCTGACGTCCAGAAGATTCTGGAGTACATTCCTGTGACCAATCAGAAGCCAGACACGGATGATGCGGAGGACCCGGAAAAAATGATGCAGAACTTTGAGTCAggcaaacacaaatacagacaGaCGGTCATGTTTACAGCCACTATGCCTCCTGCAGTGGAGCGTTTGGCCAGAAGTTACCTCCGTCGGCCTGCGGTGGTGTACATCGGTTCTGCAGGCAAACCTCACGAGAGGGTGGAGCAGAAGGTCATCCTCATGTCTGAGGGTGAaaagagGAAGAAGCTGCTGGATGTTTTGGCAAGTGGCTTCGAGCCGCCCATCATCATTTTTGTTAACCAGAAGAAGGGTTGTGACGTGCTGGCTAAGTCTTTGGAGAAGATCGGATATAATGCTTGTACACTCCATGGCGGTAAAGGTCAGGAACAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCGGGAGCGAAGGACATCCTGGTGGCCACAGACGTGGCGGGCAGAGGTATCGACATCCAGGACGTCTCCATGGTCATCAACTATGACATGGCCAAGAACATCGAGGATTATATCCATCGTATTGGCCGAACGGGTCGTGCTGGAAAGAGTGGTGTGGCCATGACTTTCCTGACCAAAGAAGACTCTTCTGTTTTCTACGACCTGAAACAGGCCATCTTAGAAAGCCCCGTGTCCACCTGCCCTCCGGAGCTGGCCAATCACCCGGACGCCCAGCACAAACCCGGCACCATCCTCACCaagaagaggagagaggagacCATCTTTGCCTGAGCCAGACCATTTACACATGCTGTTTTGTTTCCTGTTGTACATCTTGTAAGTGTGCTGTGTTTTACCACCAGATTATTTGCAACCAAGTTCATGAGAGACCACCAGTAATCCAGAGGATCGGTTTTCTGCCAGATAAACCAATGACAAAGTGTAGAAATCTGTAAGAAAGCTGTAGTAGAGAGAAGGCAATACTTGACATCCTAAGTTGTTCGGCTAGAGCAGCAAacatctttcctttttttttttacacattacatgtaattgtgtttttaaatggtgtaaaaaatgctaattcatgaATGCATCTGTAGATACTCCATGTCAGTCAAAGGATAGGTAAAACTCTTCACTCTGTGGATAAATAAAGTCCTTTAGACTGA
>XM_043224425.1
TGGTTAGCTGTGTTTTGATGATTTGACTAAAATGTGacttatttttttcctaaacaAATGCTTTTCCCGTGCAATAAGTCTACACAATAATCTGTTAGATCCTGATTGGTAAATGTCGCACGGTTTTGgggaaagaaaaatattgaaatATGGCGGGTGACTCATCTGATAAGAAGGACCTGGACACCGCGGGGAAGGAGCGGGAGTCTCGTAAGCGCAGTCGTTCTCGCTCCAGGGATCGGGATCGGGATCGGAAAGGGTCTCCCGGCAGAGAACGCAAACGGCACCGATCCCGTGAACGCAAGCGCTCCCGCAGCAGATCCAAATCTCCCGAGCGAGACCGTCGTCtaaaagataaagagagagacagagacagagacaaggACAGAGACAGGAGCCgcaaagacagagaaagagacagggaCAGACGGGACAAGGACCGGTCTAAGAAATCAAGgagcACTTCTCCTAAATCCAAGGATTTGAAAATAAAGAGGGAGAAGGATTtgaaaaaagaggaagaggaggaagatgagaagaagaaagagaagGTGCAGCCTCTTTCTCTTGAAGAACTGCTTGCTAAAAAGAAAGCGGAAGAAGAGGCAGAATCTAAGcCCAAGTTCTTGTCTAAAGCAGAGCGAGAAGCTGAGGCCATCAAACGCAGGGAGCTGATTGCAGAGGAGCGCCGCAGACAGCTGGACGAGGAAAGGAAGAAACGAAGAGTATTTCAGGACATTGGCAGGAAGATGCTAGAGGATCCTCAGGAGAGAGAACGGCGGGAAAGAAGGGAGCGGATGGAAAGAGAGAACAATGGCAATGATGAGGATGATGGGCGCCAGAAAAttagagaagaaaaagacaaaggaaAAGAACTGCAGGCCATAAAGGAGCGTTATCTTGGTGGTATGAAGAAACGGAGGCGTACCCGCCATCTGAATGACAGGAAGTTCGTCTTTGAGTGGGATGCATCTGAAGACACGTCAATCGACTACAATCCAATCTATAAAGAAAAGCATCAGGTTCAGCTGTATGGCCGAGGCTTCATCGCCGGCATCGACCTCAAGCAGCAGAAGAGAGATCAGTCCCGATTCTACGGAGACCTGATGGAGAAGAGAAGGACTCTTGAAGAGAAGGAGCAAGAGGAACAGAGGCTGAAGAAGGTCCGGAAGAAGGAGGCCAAGCAGCGCTGGGACGACCGGCACTGGTCTCAGAAGAAGCTTGATGagatgacagacagagactGGAGAATCTTCAGAGAGGACTACAGCATCACGACCAAAGGAGGAAAGATCCCCAACCCCATCCGCAACTGGAAGGAGTATTCCCTGCCGCCACACATTCTGGAGGTCATCGAAAAGTGCGGCTATAAGgATCCCACGCCTATCCAGAGGCAGGCCATTCCTATTGGTTTACAGAACCGTGACATCATCGGTGTGGCCGAGACTGGTAGTGGTAAAACCGCCGCCTTCCTCATTCCTTTATTGGTCTGGATCACCACTCTACCTAAGATTGACAGGATCGAGGACTCCGATCAGGGACCGTATGCCATCATTCTGGCCCCCACTCGTGAGCTGGCACAGCAGATAGAGGAGGAGACGATTAAATTTGGCAAACCGCTGGGGATCCGGACAGTGGCTGTGATCGGTGGAATATCCAGAGAGGATCAAGGGTTCAAACTCAGGATGGGTTGTGAGATTGTTATAGCCACACCCGGTCGTTTGATCGACGTCTTGGAAAACCGATACCTCGTCCTGAGCAGATGCACATATGTGGTACTGGATGAAGCTGACAGAATGATTGACATGGGCTTTGAACCTGACGTCCAGAAGATTCTGGAGTACATTCCTGTGACCAATCAGAAGCCAGACACGGATGATGCGGAGGACCCGGAAAAAATGATGCAGAACTTTGAGTCAggcaaacacaaatacagacaGaCGGTCATGTTTACAGCCACTATGCCTCCTGCAGTGGAGCGTTTGGCCAGAAGTTACCTCCGTCGGCCTGCGGTGGTGTACATCGGTTCTGCAGGCAAACCTCACGAGAGGGTGGAGCAGAAGGTCATCCTCATGTCTGAGGGTGAaaagagGAAGAAGCTGCTGGATGTTTTGGCAAGTGGCTTCGAGCCGCCCATCATCATTTTTGTTAACCAGAAGAAGGGTTGTGACGTGCTGGCTAAGTCTTTGGAGAAGATCGGATATAATGCTTGTACACTCCATGGCGGTAAAGGTCAGGAACAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCGGGAGCGAAGGACATCCTGGTGGCCACAGACGTGGCGGGCAGAGGTATCGACATCCAGGACGTCTCCATGGTCATCAACTATGACATGGCCAAGAACATCGAGGATTATATCCATCGTATTGGCCGAACGGGTCGTGCTGGAAAGAGTGGTGTGGCCATGACTTTCCTGACCAAAGAAGACTCTTCTGTTTTCTACGACCTGAAACAGGCCATCTTAGAAAGCCCCGTGTCCACCTGCCCTCCGGAGCTGGCCAATCACCCGGACGCCCAGCACAAACCCGGCACCATCCTCACCaagaagaggagagaggagacCATCTTTGCCTGAGCCAGACCATTTACACATGCTGTTTTGTTTCCTGTTGTACATCTTGTAAGTGTGCTGTGTTTTACCACCAGATTATTTGCAACCAAGTTCATGAGAGACCACCAGTAATCCAGAGGATCGGTTTTCTGCCAGATAAACCAATGACAAAGTGTAGAAATCTGTAAGAAAGCTGTAGTAGAGAGAAGGCAATACTTGACATCCTAAGTTGTTCGGCTAGAGCAGCAAacatctttcctttttttttttacacattacatgtaattgtgtttttaaatggtgtaaaaaatgctaattcatgaATGCATCTGTAGATACTCCATGTCAGTCAAAGGATAGGTAAAACTCTTCACTCTGTGGATAAATAAAGTCCTTTAGACTGA
>XM_043224426.1
agactacatttcccataatcCATCACAGGAAGTCCGTCATATGTTGACGCCAAGCATAATGGCGGCTCAGTGAAACGCACAGGCTTCGCAAGCGACTTCATTTTGATCTGTTAAGATGGCGGGTGACTCATCTGATAAGAAGGACCTGGACACCGCGGGGAAGGAGCGGGAGTCTCGTAAGCGCAGTCGTTCTCGCTCCAGGGATCGGGATCGGGATCGGAAAGGGTCTCCCGGCAGAGAACGCAAACGGCACCGATCCCGTGAACGCAAGCGCTCCCGCAGCAGATCCAAATCTCCCGAGCGAGACCGTCGTCtaaaagataaagagagagacagagacagagacaaggACAGAGACAGGAGCCgcaaagacagagaaagagacagggaCAGACGGGACAAGGACCGGTCTAAGAAATCAAGcACTTCTCCTAAATCCAAGGATTTGAAAATAAAGAGGGAGAAGGATTtgaaaaaagaggaagaggaggaagatgagaagaagaaagagaagGTGCAGCCTCTTTCTCTTGAAGAACTGCTTGCTAAAAAGAAAGCGGAAGAAGAGGCAGAATCTAAGcCCAAGTTCTTGTCTAAAGCAGAGCGAGAAGCTGAGGCCATCAAACGCAGGGAGCTGATTGCAGAGGAGCGCCGCAGACAGCTGGACGAGGAAAGGAAGAAACGAAGAGTATTTCAGGACATTGGCAGGAAGATGCTAGAGGATCCTCAGGAGAGAGAACGGCGGGAAAGAAGGGAGCGGATGGAAAGAGAGAACAATGGCAATGATGAGGATGATGGGCGCCAGAAAAttagagaagaaaaagacaaaggaaAAGAACTGCAGGCCATAAAGGAGCGTTATCTTGGTGGTATGAAGAAACGGAGGCGTACCCGCCATCTGAATGACAGGAAGTTCGTCTTTGAGTGGGATGCATCTGAAGACACGTCAATCGACTACAATCCAATCTATAAAGAAAAGCATCAGGTTCAGCTGTATGGCCGAGGCTTCATCGCCGGCATCGACCTCAAGCAGCAGAAGAGAGATCAGTCCCGATTCTACGGAGACCTGATGGAGAAGAGAAGGACTCTTGAAGAGAAGGAGCAAGAGGAACAGAGGCTGAAGAAGGTCCGGAAGAAGGAGGCCAAGCAGCGCTGGGACGACCGGCACTGGTCTCAGAAGAAGCTTGATGagatgacagacagagactGGAGAATCTTCAGAGAGGACTACAGCATCACGACCAAAGGAGGAAAGATCCCCAACCCCATCCGCAACTGGAAGGAGTATTCCCTGCCGCCACACATTCTGGAGGTCATCGAAAAGTGCGGCTATAAGgATCCCACGCCTATCCAGAGGCAGGCCATTCCTATTGGTTTACAGAACCGTGACATCATCGGTGTGGCCGAGACTGGTAGTGGTAAAACCGCCGCCTTCCTCATTCCTTTATTGGTCTGGATCACCACTCTACCTAAGATTGACAGGATCGAGGACTCCGATCAGGGACCGTATGCCATCATTCTGGCCCCCACTCGTGAGCTGGCACAGCAGATAGAGGAGGAGACGATTAAATTTGGCAAACCGCTGGGGATCCGGACAGTGGCTGTGATCGGTGGAATATCCAGAGAGGATCAAGGGTTCAAACTCAGGATGGGTTGTGAGATTGTTATAGCCACACCCGGTCGTTTGATCGACGTCTTGGAAAACCGATACCTCGTCCTGAGCAGATGCACATATGTGGTACTGGATGAAGCTGACAGAATGATTGACATGGGCTTTGAACCTGACGTCCAGAAGATTCTGGAGTACATTCCTGTGACCAATCAGAAGCCAGACACGGATGATGCGGAGGACCCGGAAAAAATGATGCAGAACTTTGAGTCAggcaaacacaaatacagacaGaCGGTCATGTTTACAGCCACTATGCCTCCTGCAGTGGAGCGTTTGGCCAGAAGTTACCTCCGTCGGCCTGCGGTGGTGTACATCGGTTCTGCAGGCAAACCTCACGAGAGGGTGGAGCAGAAGGTCATCCTCATGTCTGAGGGTGAaaagagGAAGAAGCTGCTGGATGTTTTGGCAAGTGGCTTCGAGCCGCCCATCATCATTTTTGTTAACCAGAAGAAGGGTTGTGACGTGCTGGCTAAGTCTTTGGAGAAGATCGGATATAATGCTTGTACACTCCATGGCGGTAAAGGTCAGGAACAGAGAGAGTTTGCTCTGTCCAACCTGAAGGCGGGAGCGAAGGACATCCTGGTGGCCACAGACGTGGCGGGCAGAGGTATCGACATCCAGGACGTCTCCATGGTCATCAACTATGACATGGCCAAGAACATCGAGGATTATATCCATCGTATTGGCCGAACGGGTCGTGCTGGAAAGAGTGGTGTGGCCATGACTTTCCTGACCAAAGAAGACTCTTCTGTTTTCTACGACCTGAAACAGGCCATCTTAGAAAGCCCCGTGTCCACCTGCCCTCCGGAGCTGGCCAATCACCCGGACGCCCAGCACAAACCCGGCACCATCCTCACCaagaagaggagagaggagacCATCTTTGCCTGAGCCAGACCATTTACACATGCTGTTTTGTTTCCTGTTGTACATCTTGTAAGTGTGCTGTGTTTTACCACCAGATTATTTGCAACCAAGTTCATGAGAGACCACCAGTAATCCAGAGGATCGGTTTTCTGCCAGATAAACCAATGACAAAGTGTAGAAATCTGTAAGAAAGCTGTAGTAGAGAGAAGGCAATACTTGACATCCTAAGTTGTTCGGCTAGAGCAGCAAacatctttcctttttttttttacacattacatgtaattgtgtttttaaatggtgtaaaaaatgctaattcatgaATGCATCTGTAGATACTCCATGTCAGTCAAAGGATAGGTAAAACTCTTCACTCTGTGGATAAATAAAGTCCTTTAGACTGA

Function

symbol description
ddx23 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human DDX23 (DEAD-box helicase 23).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX23

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12858 DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224424.1 False 2946 mRNA 0.50 17 4914490 4920882
XM_043224425.1 True 2980 mRNA 0.49 17 4914490 4920508
XM_043224426.1 False 2943 mRNA 0.50 17 4914490 4920882

Neighbor

gene id symbol gene type direction distance location
adcy6a adcy6a,adcy6,LOC107705664 coding downstream 37462 4835981 ~ 4877028 (-)
g6pd g6pd,LOC107723128,LOC107705737,LOC107693547,LOC107697003 coding downstream 87311 4815822 ~ 4827179 (-)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding downstream 99165 4811788 ~ 4815325 (-)
prpf6 prpf6,LOC107705744,LOC107697009,LOC107673318 coding downstream 348216 4551029 ~ 4566274 (-)
edem2 edem2,LOC107697010 coding downstream 368084 4540302 ~ 4546406 (-)
nkain4 nkain4,LOC107693550,LOC107696930,LOC107601334,LOC107705734,LOC107594068 coding upstream 7147 4928029 ~ 4977122 (-)
gss gss coding upstream 155471 5076353 ~ 5082995 (-)
sla2b LOC107705729,LOC107696991,LOC107594020,LOC107724197,LOC107693557 coding upstream 172951 5093833 ~ 5110924 (-)
ndrg3b ndrg3b,ndrg3,LOC107724194,LOC107696989,LOC107705728,LOC107693556 coding upstream 193745 5114627 ~ 5153535 (-)
phf20b phf20b,LOC107696986,LOC107724192,LOC107705726,LOC107594424,LOC107575030,LOC107693555 coding upstream 233079 5153961 ~ 5169328 (-)
G155096 NA non-coding downstream 183350 4727854 ~ 4731140 (-)
G155093 NA non-coding downstream 201408 4712689 ~ 4713082 (-)
G155092 NA non-coding downstream 204153 4707665 ~ 4710337 (-)
G155085 NA non-coding downstream 234211 4679983 ~ 4680279 (-)
G154933 NA non-coding downstream 364272 4546883 ~ 4550218 (-)
G155153 NA non-coding upstream 164260 5085142 ~ 5089097 (-)
G155156 NA non-coding upstream 175650 5096532 ~ 5097130 (-)
G155157 NA non-coding upstream 190962 5111844 ~ 5112964 (-)
LOC122329300 NA non-coding upstream 509664 5430546 ~ 5431524 (-)
G155238 NA non-coding upstream 604159 5525041 ~ 5547708 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 79970 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 719492 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 1008598 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 1396348 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 1468526 3434124 ~ 3445964 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 533535 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 556959 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 563330 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 1809969 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 1845726 6766608 ~ 6823032 (-)

Expression


Co-expression Network