kif3b (kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362)


Basic Information

Item Value
gene id kif3b
gene name kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7774301 ~ 7782717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224442.1
GTTTCTGTTTCGGCGTGTGCTCTATTAATAATGACACGGTTTGTTTGCCGTTGCCAGGCCGCTTGTTTTGAGTCTCTGCATCCTCACAGATCCGTTTATACACCTCGACGGGCTAATGTTAGCAACAGTGCTTTATCGAACTCAAAACGGCACGATCGCTGTTGAGACGACGGCGTTTTCGGCAAAACGGAAAATTAGCATTCGTCTCTTCGGCTGATGCTGGCAGCACCAACACTGTGAAATAAACTACAATCTCATTAGGAGAGGCCAGCAGATACCCCAGAGCCATCAAAATGTCTAAAAGCAAGAGCTCTGAATCCGTTAAGGTAGTGGTGCGTTGCCGCCCCATGAATGAGAAGGAGCGAGCCGCCAACTTCGAGAGGGTGGTTTCGGTGGATGTGAAGTTTGGGCAAGTGGCTGTGCGCAACTCTCGAGGAGCGTCTTCCCATGAGCACCCGAAAGTGTTCACCTTTGATTCAGTCTACGACTGGAATTCGAAGCAGATGGAGCTCTACGATGAGACTTTCCGACCGCTAGTGGACTCTGTACTCTTTGGCTTCAATGGGACCATCTTTGCATACGGCCAGACGGGCACCGGAAAGACTTACACGATGGAAGGGGTGCGAAACGACCCCGACAGGAGGGGCGTCATCCCGAACTCCTTCgaacacattttcacacacatcTCCCGCTCTCAGAACCAGCAATACTTGGTGAGGGCTTCCTACTTGGAGATTTATCAAGAAGAGATCAGGGACCTTTTATCGAAAGACCAATCGCGTCGGCTGGAGCTCAAAGAGAGACCGGATACGGGTGTCTACGTTAAAGACCTCTCTTCATTCGTCACTAAAAGTGTTCGTGAGATTGAGCATGTGATGAACGTGGGGAACCAGAACCGCTCGGTTGGCGCAACTAACATGAACGAGCACAGCTCTCGCTCTCATGCCATCTTCGTCATCACCATCGAATGCAGTGAGTTGGGTCCGGATGGGGAGAACCACATTCGGGTTGGGAAACTCAACCTTGTTGACCTGGCGGGAAGTGAAAGGCAGACCAAAACTGGTGCTCAGGGGGCGCTGAAAGAAGCCACCAAAATCAATCTCTCTTTGTCAGCTTTGGGCAACGTCATCTCAGCGCTGGTGGATGGGAGAAGCACCCACATCCCATACCGTGACTCTAAACTTACAAGACTGCTTCAGGATTCCTTGGGCGGAAATGCCCGTACGGTGATGGTTGCCAACATCGGACCTGCTTCCTACAATTTGGAGGAGACGCTGACCACGCTACGCTATGCAAATCGCGCCAAAAACATCAAGAACAAACCCCGCGTCAACGAAGACCCCAAGGATGCCCTGCTTCGGGAGTTTCAGGAGGAGATTGCCCGCTTGAAAGAACAGTTGGAGAAGAGGTCTGgcaggaagaggaggaaaaggaggagaaggagggtTGGAGAAGGAGGGGAGGAGTTAGAAGATGGagaggatgatgaggaggaggatgacGACGACGAAGAGGACGAAGAGGATGGAATGAGTGCAGATAAGAACATCACAGATTATTGGCGGGAACAACAAGAGAAGCTGGAGAAGGAGAGGAAGGCCATCATGGAGGACCACAGCCTGGTGGCCGAGGACAAACAGCGGctgctgaaagagaaagagaggaagatgGACGATCTTTGCAAAGAGAAGGAGGCGTCAGAGATGCTGGCGGCCAAAGTTAAGGCCATGGAAAGCAAGCTGCTGGTGGGAGGAAAGAACATTGTCGACCACACCAATGAGCAGCAGAGGATTCTGGAGCTGAAGAGGCAGGAGATAGCCGAACAGAAAAGGCGGGAAAGGGAGATGCAGCAGGAGATGGAGTGTCGTGACGAAGAGACGCTGGAGCTCAAAGAGACGTACAGCTCCCTGCAGCAGGAAGTTGACATTAAGACCAAGAAACTGAAAAAgCTCTTTTCCAAGCTGCAGTCTGTGAAGGCGGAGATTCAGGACGCCCAGGACGAACACGTCAAATACAGGCAGGAGCTGGAGCAGACGCAGAATGAGTTGACCAGAGAACTCAAACTTAAACATCTGATCATAGAGAACTTCATCCCAACGGAGGAGAAGAACAAGATCGTACGAGCCACTTTTGATGAAGAAGATGACCTTTGGAAGATGACCCCCATCACTCGCATTCAAAATGATCAGCAGATGATGAAAAGGCCTGTTTCTGCAGTGGGCTACAGACGGCCTCTGAGTCAGCACGCCCGTATGGCCATGTTGATGCGGCCTGATGTCAGATACAAGGCTGAGAATATCTTGCTGCTGGAGTTGGACCTTCCCACTCGGACCACAAAAGACTACGAGGGGCCGGTGATCGCTCCTAAAGTGGCTGCGGCTCTGGAGGACGCTCAGGAGGAAGATGAGATCCAGGTGGACGCCTCTGGTCTTCGTGCCAGCCTGGGCTCCAGTCCAGGCCTCAGTGCCTCAGCTGCTGGGTTTTCCAAGAAACCAAAGTCAGGCCGCCCAAAAACTGGCAAGAAGGTGAGCACTCCAACTTCAGCTCACAGCCCTTTGTCCGGCTCAGGTCCCTCTTTACCACAGTCCCGAGGCCTTGTGCCaaagtgaaaataatgaaaacctTCACCGCTCCATGTAAACTGACTGGCTTTGGCATTAAAGTTGTCATTTTTAGACAGATTTACGACGGTAGAACATCTTGGTGTTTTATTCAAACCCACCAATTGGCCCTCAAACTAACTTGTTTTTAGATATCACGTAAACATAAGGTTTATAGcgcaaaaaaaagttacatttggtGAGAATTAAATCTCAACGCAAGATTTAGTTCCACAGATTTAGTTTGCACTCAAGCAAAatgttacgtgtgtgtgtgtgtgaggtcattGAGACAGCAGATGGTCTCGAAATTGACCATACGTGGTAGTTACGTCATTgtgggaatgtttttttttcttctgtgtccAGTTGTAGGATTAACAAATTTCTCACAAAGTAGCTGGAGATGAGATTTATGCTGGTCTGGGCCACTAAAGCACTGTATTGTTGTTTGACAAGAGAGTAAGCACATTACGTCATTGGCTAAGACCCAAAACAACCTCTAAGCCTTTTTCCGAAGACTCTTTGAGTCGCTTTGGCTGGGAGATGGGCCCAGAAACGCACTTGACCGGGTTGCCATCACAGTCAGCGCTGTATCCAGTAAGAAAAGGAATTAGGGGGTTTAAAGGTCATTACATACTAAAAATATCAGGGTTCCAAGGTGCCTTAGATTCTCTTTACATACAGAAGTTTGGTCTGAGAGTCCCTTGACCTGATAGCTGGACAGTTGAACCCGAAATCCACACCAAAACCCCTGTGGATGGTTCATGAATGCTTTGAATTACACTAGAAGTCTGTCGTGTTGGGCAGGCTTGTATTTGATGTTCACGGGGATCTGAGTTTGACACGAGGAAGTCTTATTTCTGTTGAACTAGTGAAGGTAATACCATTGCCTGCTGCTACTGTAGGGTTCTTTTACCCCTGTGTCATAGCATACGGTTATGTATATTAAGACATGTTAGTAAATAAATCTGCATCATCATTGCAGTTGTATTtaaatccaaaataataaatgcagtcttaaagtaacattttaaaaaggctaaGTTATTACCATACTAGTCGGTTTTATATTCAAGCAATTGTAGATAGTTTTTAACAGTCGTATTTTCTTTGCTTAGATTTATAtggtttatttttgaatatgtattatttaaagttgtgtacaaatttatttttgcatataagATTTAAGTATCATTTTCATGTGATTCACTGCGTTCTCTTGTGTTGAGCGAAATGCGCCATCGTCGTATAATAAACACGCAGCTTTTGGATCGTCAGAACGTGTCCTGCAAATCCTGATGCTGCTCATTGAAATCGGTGTGAATTTCTTCATTTGAGTATGCATTATCTAATCAATGTTCACGCTGCCACTCCTGGCTGTATTAATGCATAAGTCATTAGTCGCCGTTATGTTATTTTTGAGGTTTTAGCATGACATGAGAACATCCAAAGCATTATAGGCAAAATGAAACCGTACGTCGGCGGTCTAATACTCCACTTTCACCTTCTTCCATGTGATGCATGAGTCCAGTGCGAATACCTACACtgagaaaataattttactgttcacacaggtttttgttttgtactaAAATGTTTTCGAATTTGTATTTGAGTTTAGAATGCAAATGTCCTCAATGTTTTAACCATCTTTAATTAAAAGGATGATTATTCTCTA

Function

symbol description
kif3b Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including cilium assembly; photoreceptor cell outer segment organization; and sensory organ development. Part of kinesin complex. Is expressed in forerunner cell group and retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 89. Orthologous to human KIF3B (kinesin family member 3B).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0048839 inner ear development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048884 neuromast development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224442.1 True 4284 mRNA 0.46 14 7774301 7782717

Neighbor

gene id symbol gene type direction distance location
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding downstream 248800 7522064 ~ 7525501 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding downstream 431602 7310570 ~ 7342699 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding downstream 683057 7088177 ~ 7091244 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding downstream 714050 7008897 ~ 7060251 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding downstream 847885 6871977 ~ 6926416 (-)
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 1588 7784305 ~ 7788287 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding upstream 39405 7822122 ~ 7832584 (-)
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 71587 7854304 ~ 7861354 (-)
LOC122328942 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 79486 7862203 ~ 7866387 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding upstream 139536 7922253 ~ 7932104 (-)
G155629 NA non-coding downstream 290096 7483923 ~ 7484205 (-)
G155628 NA non-coding downstream 291809 7482027 ~ 7482492 (-)
G155627 oprl1,LOC107705672,LOC107681404,LOC107666560,LOC107727003,LOC107559467 non-coding downstream 293731 7479495 ~ 7480570 (-)
G155624 NA non-coding downstream 312999 7460929 ~ 7461302 (-)
G155623 NA non-coding downstream 314521 7459531 ~ 7459780 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding upstream 37029 7819746 ~ 7852251 (-)
G155684 NA non-coding upstream 51845 7834562 ~ 7836538 (-)
G155698 NA non-coding upstream 190386 7973103 ~ 7973325 (-)
G155737 NA non-coding upstream 393982 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 524562 8307279 ~ 8382607 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 495978 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 770778 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 792340 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 907001 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 951269 6766608 ~ 6823032 (-)
G155807 NA other upstream 762677 8545394 ~ 8551977 (-)
G155827 NA other upstream 843041 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1130345 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1138847 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1296815 9079532 ~ 9097302 (-)

Expression


Co-expression Network