jph2 (jph2,LOC107707015,LOC107715007,LOC107593978,LOC107697945,LOC107598797,LOC107664110)


Basic Information

Item Value
gene id jph2
gene name jph2,LOC107707015,LOC107715007,LOC107593978,LOC107697945,LOC107598797,LOC107664110
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18547229 ~ 18563142 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224445.1
AAACATATCCAGGAGCTCCGAGCGCAAAGAGGGGAGGCAGGGAGAGGGGAGAGGGGTGAAAGCCATGAAAGACCACTGGCTCGACAATTCGATTAAATAGATCATTGTGAACTAAAACAATTAGcatgtaactttaaaaaaaaaaaaaataaaacaaaggaaCCCTCCCTCTCCCAAGTCAAATTCAAACTTTAGCACGTTTCTTTTAGCTGTAACATTTTTAAGGATTTACCTGCAGACAAATTATGCGCGTAGGCTATACGACGAGGTTCAACGCGAGGGAAGGATCTCCCGTCTCCCTTTTACGCGTCTGCGGAGTTTGACAGATGGATCTAACGGAGACTAAGCCGTTCGTTATTGTTGATTTTTAAAGTCGCGCCTGAAAGTTTGACAAGTTCGTGGTAATTGCATTAAGAGCGATGAGCGGAGGTCGCTTCGAGTTCGACGATGGGGGAGCTTATTGTGGAGGCTGGGAAGGAGGTAAAGCGCACGGGCACGGGATCTGTACCGGACCTAAAGGACAGGGAGAGTTCTCCGGTTCCTGGAATTACGGGTTCGAGGTGGTGGGAGTCTACACCTGGCCCAGTGGAAACACTTACGAGGGGTATTGGTCCCAAGGAAAGCGTCACGGTCTAGGTGTGGAGACCAAGGGACACTGGATCTACAAGGGAGAGTGGACGCACGGATTTAAAGGCAGATACGGGACGCGCATCAGTCAGGCCAGCGGTGCCAAGTACGAGGGCACCTGGAATAACGGACTGCAGGATGGTTACGGCACGGAGACCTACGCGGATGGCGGTACCTTCCAGGGCCAGTTCACTGGTGGCATGCGACATGGCTATGGAGTACGTCAGAGCGTTCCCTACGGCATGGCGGCGGTGGTGCGTTCTCCTCTGAGGAACTCCCTGAGCTCCCTGCGCAGCGAACACAGCAACGGGACGCTCCTGCAGCAGGACATCCCGGTCATCACCGCCACCAATGCGTCCGGCCAGGAGACCCCGGTCAGCACGCCTATGCCTCTGGGCCCATCCCGCGGCGGCTTCGCCCTCACACTGCAAGTGGACCCAGATGCGGTCAAGCCCAAGAAGAAGGGCCTCTTCCGGCGCGGCTCGCTTCTCGGCAAGCTGAAGAAGTCCGATTCCCGCACGTCCCTCTCCAGCAATAAGAGCAAGATCAGCTTTTTGCGCAGTGAGTCAGCTCTCAGCTCCGCAGCTAGCGATGCCAACTCCACCATCAGCCTGGGTGAGAGCGAAGGGGAAGGTGAAGGTCACGACTTTCCCCCGGTGGAGTCGGACATCGACGCCACCACCACAGAAGTCTACATGGGAGAGTGGAAAAACGACAAGCGCTCGGGTTACGGCATCAGCGAACGTTCTAGCGGGCTGAAGTATGAGGGCGAATGGCTGAACAACCAGCGGCACGGTTATGGGTGCACCACTTTCGCAGAGGGTGGCAAAGAGGAAGGCAAATACGTTAACAACATGCTGGTGAAGTCTGTGAAGAAGAAGGTGATTCAGCTGAAGGGCACTAAGATCAAGCAGAAAGTGGAGCGCAGTGTGGAAGGAGCCCAGAGGGCAGCCGCTATAGCCAAACAGAAGGCCGAAATTGCCAACTCAAGAACGGCTCACGCCAAAAGCAAAGGAGATGCTGCAGACCAGGCTGCCATAGCATCTAACAATGAGTCTAGTATCGCCCGTGTGGTTGCCAGAGAGCTCTCTCCCTCCTTCCATCAACCAGGACCGGAGTATATGAAAAAGCGAGCCTTGCAGGAGGTTGCTGAGAGAAATGAGAATGCAGATACAGGGATGCACGAGCCCTTATTAGCCGAGGATTCCCTACCAACACCCCCGGAGAGCCCCTTCATGCACGAGATGGAAAGTCTTAGACCAAGCTCCACCATTGCACGTACTCCCTCACCCACTGCAGTCATCGTCCCCCAGACACCCAGCAAGGAAGATCCAAACCTCTTGAGCCCTGGCAGCTGGAACGGAGACAAGGCCAGTCGGGGCAGTGGTAGCAGAGGTAGCAGTCGAGCAGGTAGTAGGCCAAGTAGTCGACCCACCACCCCGTCTTCCACTCCTGCCGTTGCTCCCGCTTCAGATGCTGTTCCAGAGGAGCGTTCTGCTCCCAGCAGCAAGGTGCCATCCCGTACCCCTAGCCGCCAAAGTGCCAAAGCCGAGCAGGGATCTGACCTGGAAATCAAAGCCCTGCAGAAAATGGATTTGGAGTCAAGAGCAGCAGAACCTGCTCCTGCTGTTACGCCAGTAAGAACCAACCTCGTCCTCACCACCGACGAAGATGAACCACCTCCTCGCCCTGCCCCCAGGCTGTCCCCCAAAGCCGTCACACCAGAGCCAAAGGCAGCTGAGGTCAAGCACAGAGCTGAAATAAGGGAGCCTGTAAATGAGCGCCCAGCTTCGAAGACAGAAAGCAAACCTGAGTCTAGGACAGAAGTCAGGGAGGAGAAGAAACTAACTAACAGAATTGAGCCTAAACCCTCACCAAAAAGAGAACCAAGCCCTGCCCCAAAAGCTGCACCAAAGCCTGAGCCCAAGTCAGTGCCTAAACCAGAACCTAAACCTGTGGTCAAGCCGGTTGCTAAACCAGTTGCCAAGGTCGAGGCCAAAACTGAAATGAGGCAGAGGTCTATTGTGAAAGCCCCTAGCGAAACAAGACAGGAGCCTCTGGAACTAAATGAGGGGCCAAACACGATTATGATCTGCATGGTTATATTCCTGAACATCGGTTTGGCAATCCTTTTCGTTCACATCCTATCTTGAGATGACAATGGCTAAGCCAAAACCATCCAGGTGAAAGAAACTACCGTGGGGAGCTGTGAGGATGCACTGCGCTCCATTAACGGCTCTGTTGTTGCGTTATCCAGTTTCAGACCAGCCCTTCTGAGCTACTCTAAAGTTGGTTGCCATCTGTAATTGGGCCGAGTGCTCCCAAATGATCAGTGTGTCTCAGTACCTGAACATTATTGAATAAAGCATTTGTGcacatttgctttgtttgtggAAGGTACTGCTGCATTTAACAGTTCTGCTGAAGTCTAATGCAGGTGAAACTGAATCATCTTTAAGGGCTAATTGTTACGTACGTTCACAATCACGTCACATATCCTATAGAGCAGAACATGTCACTTGGCATGTAATGTTCATCTTTGGAGAATAAACAAATAGTTATGACATTATGAAATGGGTCaatcctgtttttttcttttcagtggcTAAAACAAAATCCACCAGTGCACTTATGTTTTAACAACAGGTAGTGTCATGCATCATAATCTCAGATGCTGTATGCAAAATGTCTTAAAGTCTCTCCTGCATGACAAGGAGCAACATGGctgaacaattaaaatatatagttgcTACAAAACACAGTGAAATTGTGAGTATTCTACAATAGTGTAATACaacaaaaagacaagaaaaaagttGTGATGAGAATGTTCTAATTAGAAAATGAGGTCTATGAAGATGTAACATGCTTAATTTTATTAAGCTAAAACATCCCTATAGAGATGGTCTCCACAAGTTTATGTGAGTTTTTaatcacaaatttaaaaatacaactatttatttaatggaaaaagaaaaaaagggggaaattaTGTTTTGGCTTACTAACTGTTGTACTGTGAATTTGTGATGGctcttttgcctttttttcttcctgtacTAGACATAACAGTATGCAAGAGAATGTTCAAACCAGATTGTGCAAATGTACATGTcccatatttttatgcatgtgtgCACATTAGTGTTTTTGTAAACTTTTAAATTCTGAACGTTAACAGAAACATTTCATGGTTTTAGCTATAACCCTCATATAGTAATGTATTACCTCAAAATTGGAAAggtcttataaaaaaaaatgttaactgtccaaaatgttatttattgaataaataaatagggttttaacattttatctaGAATAACAAATTAAGTTGATTAGGGGTTTACAAGTCCCAATTCACCCAAATACACTTGTTTCTTATAGCTTTGAAATCACTAGACATGCCATTTTCACTACTTTGTAACATTAAATCCTTTAATATCTGTAATATGACTTCCAAATGGATTACATTTTAGCTAATAAAGACATAGTATTTCAGCATGGTTGATGCATTGCATTACTTGAGATTATCGTGCAAAATCCCCTCTTCACATGACTGTTACGTTTCTTGTGTTTCAACACTCACAAAATGCACcacacaatttaaataaatgactatcaACTGAA

Function

symbol description
jph2 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 17. Orthologous to human JPH2 (junctophilin 2).

NR:

description
PREDICTED: junctophilin-2

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224445.1 True 4257 mRNA 0.47 6 18547229 18563142

Neighbor

gene id symbol gene type direction distance location
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107697860,LOC107599644,LOC107706975 coding upstream 12135 18532917 ~ 18535094 (+)
nr1d4a nr1d4a,LOC107715006,LOC107707011,LOC107697943,LOC107593977,LOC107664228,LOC107598823 coding upstream 15727 18516604 ~ 18531502 (+)
calcoco1a calcoco1a,LOC107697941,LOC107593974,LOC107598830,LOC107664191 coding upstream 95343 18437059 ~ 18451886 (+)
cbx5 cbx5,LOC107714996,LOC107664188,LOC103047453,LOC107697930 coding upstream 303526 18235688 ~ 18243703 (+)
nfe2 LOC107593960,LOC107714957,LOC107664150,LOC107707001,LOC107697927,LOC107598932 coding upstream 315339 18215096 ~ 18231890 (+)
LOC122328644 tuba1c,LOC108255233,LOC103148207,LOC102311436,LOC106920718 coding downstream 12056 18575198 ~ 18578740 (+)
tmem18 tmem18,LOC107714962,LOC107594052,LOC107664181,LOC107697861,LOC107706976,LOC107599622 coding downstream 30592 18593734 ~ 18595684 (+)
fbxo25 fbxo25,LOC107715015,LOC107664196,LOC107697951,LOC107707022 coding downstream 83055 18646197 ~ 18653191 (+)
cmtr1 cmtr1,LOC107715019 coding downstream 111472 18674614 ~ 18689276 (+)
cpne9 cpne9,LOC107706977,LOC107715020,LOC107664104,LOC108432252,LOC108275764 coding downstream 128879 18692021 ~ 18729675 (+)
G158880 NA non-coding upstream 1739 18544910 ~ 18545490 (+)
G158830 hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 190695 18296006 ~ 18356534 (+)
G158828 NA non-coding upstream 273737 18273226 ~ 18273492 (+)
G158827 NA non-coding upstream 274386 18272329 ~ 18272843 (+)
LOC122329094 NA non-coding upstream 275302 18250591 ~ 18271927 (+)
G158866 LOC107714908,LOC108433416,LOC107659949 non-coding downstream 2134 18565276 ~ 18569950 (+)
G159002 NA non-coding downstream 37760 18600902 ~ 18601176 (+)
LOC122329080 NA non-coding downstream 58684 18621826 ~ 18623979 (+)
G159018 si:ch211-225h24.2,LOC107715017,LOC107594029,LOC107664242,LOC107697952,LOC107707023,LOC107598767 non-coding downstream 90254 18653396 ~ 18655822 (+)
G159034 NA non-coding downstream 175619 18738761 ~ 18738995 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other upstream 488312 18057114 ~ 18058917 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other upstream 690695 17811069 ~ 17856534 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 1119198 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 1120596 17423120 ~ 17426633 (+)
G158523 NA other upstream 1375390 17105498 ~ 17171839 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 78352 18641494 ~ 18644692 (+)
G159081 NA other downstream 208808 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 236430 18799572 ~ 18814653 (+)

Expression


Co-expression Network