LOC122328644 (tuba1c,LOC108255233,LOC103148207,LOC102311436,LOC106920718)


Basic Information

Item Value
gene id LOC122328644
gene name tuba1c,LOC108255233,LOC103148207,LOC102311436,LOC106920718
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18575198 ~ 18578740 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224451.1
TCGTTTCGACGTCAAGCTCTTTCTagctcctcctcttcatcctcaaCTGACTGCCTCAATCTTAGACAGTGTACTCAGTATACTCCAACAATAAAGAAATTTCCTGCCTGCTGATATTCGCCTCACCGCTCCATCTCCTCCAGAACAATGCGTGAGTGTATCTCTATCCACGTTGGTCAAGCTGGAGTCCAGATCGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCACGGCATCCAGCCGGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGTGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGTACATACCGTCAGCTGTTCCACCCTGAACAGCTCATCACTGGAAAGGAAGATGCTGCCAATAACTATGCCCGTGGTCACTACACTATTGGAAAGGAAATCATTGACCTGGTGTTGGACAGGATTCGCAAACTGgctGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCCGCTCCTCAGGTCTCCACCGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTACGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTACTTACACCAATCTCAACAGGCTGATCAGTCAGATCGTGTCCTCCATCACAGCCTCCCTCAGGTTTGATGGTGCCCTCAATGTTGATCTTACAGAATTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCATTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCCGAAATCACTAATGCTTGCTTCGAGCCAGCAAATCAGATGGTGAAATGCGACCCACGTCACGGCAAATACATGGCTTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCCAAAGACGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTTGGAATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGGGATCTGGCTAAAGTGCAGAGGGCTGTGTGCATGTTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTACGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAAGTCGGTGTCGACTCCATCGAGGGTGAGGGAGAAGAGGAGGGCGAGGAATATTAAAATTTTCACTAAAtgtctaaaactaaaaacagtagACCGGTAATTTACACACGATATACATGAGGTATCAAGTGTAAAGTCTACTCCTAAATGTTAGAGACACATTCTTGATCAGTTGTTGTATTGTTACGGCCAGTATGATTATTATTTGTGGAATTTGCTTGCCAAATTTTTGACTGAATAAATTGAtggtgatataaaaaaaaa

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: tubulin alpha-1A chain-like

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224451.1 True 1710 mRNA 0.50 4 18575198 18578740

Neighbor

gene id symbol gene type direction distance location
jph2 jph2,LOC107707015,LOC107715007,LOC107593978,LOC107697945,LOC107598797,LOC107664110 coding upstream 12056 18547229 ~ 18563142 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107697860,LOC107599644,LOC107706975 coding upstream 40104 18532917 ~ 18535094 (+)
nr1d4a nr1d4a,LOC107715006,LOC107707011,LOC107697943,LOC107593977,LOC107664228,LOC107598823 coding upstream 43696 18516604 ~ 18531502 (+)
calcoco1a calcoco1a,LOC107697941,LOC107593974,LOC107598830,LOC107664191 coding upstream 123312 18437059 ~ 18451886 (+)
cbx5 cbx5,LOC107714996,LOC107664188,LOC103047453,LOC107697930 coding upstream 331495 18235688 ~ 18243703 (+)
tmem18 tmem18,LOC107714962,LOC107594052,LOC107664181,LOC107697861,LOC107706976,LOC107599622 coding downstream 14994 18593734 ~ 18595684 (+)
fbxo25 fbxo25,LOC107715015,LOC107664196,LOC107697951,LOC107707022 coding downstream 67457 18646197 ~ 18653191 (+)
cmtr1 cmtr1,LOC107715019 coding downstream 95874 18674614 ~ 18689276 (+)
cpne9 cpne9,LOC107706977,LOC107715020,LOC107664104,LOC108432252,LOC108275764 coding downstream 113281 18692021 ~ 18729675 (+)
klf15 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 coding downstream 166282 18745022 ~ 18754478 (+)
G158866 LOC107714908,LOC108433416,LOC107659949 non-coding upstream 5248 18565276 ~ 18569950 (+)
G158880 NA non-coding upstream 29708 18544910 ~ 18545490 (+)
G158830 hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 218664 18296006 ~ 18356534 (+)
G158828 NA non-coding upstream 301706 18273226 ~ 18273492 (+)
G158827 NA non-coding upstream 302355 18272329 ~ 18272843 (+)
G159002 NA non-coding downstream 22162 18600902 ~ 18601176 (+)
LOC122329080 NA non-coding downstream 43086 18621826 ~ 18623979 (+)
G159018 si:ch211-225h24.2,LOC107715017,LOC107594029,LOC107664242,LOC107697952,LOC107707023,LOC107598767 non-coding downstream 74656 18653396 ~ 18655822 (+)
G159034 NA non-coding downstream 160021 18738761 ~ 18738995 (+)
LOC122329216 NA non-coding downstream 177545 18756285 ~ 18763992 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other upstream 516281 18057114 ~ 18058917 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other upstream 718664 17811069 ~ 17856534 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 1147167 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 1148565 17423120 ~ 17426633 (+)
G158523 NA other upstream 1403359 17105498 ~ 17171839 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 62754 18641494 ~ 18644692 (+)
G159081 NA other downstream 193210 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 220832 18799572 ~ 18814653 (+)

Expression


Co-expression Network