tnfrsf9a (LOC107708826,LOC107656554)


Basic Information

Item Value
gene id tnfrsf9a
gene name LOC107708826,LOC107656554
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9189374 ~ 9193433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224462.1
TGACATGGCAGGCCAGTCCTTTGAGTCATGATGTGTCATTAACCAGCAGTTAAAAGTACGTCTGCGTCTACAGCTCAGCGTCTGCGTCCCTTAAAGCCTGCAGTTTATTTATCTCTCGTTTCGCTGTAACACTTCACATCGCGACATTAAACGTGTGAAGAAACTCTAAAGACGAAGTAAAAGTCACGTTGGCAGAGGTGCGAGAGCACTGCGCGTGAACGCGTTTATGTGGAAGCCTTTCAAAGACACGCCCACTTCAGTGAGGTCTTGTACATTTCTGATCTTTTAATGATGAGCCATTGGAAATTCTCATTGTAGTGCGCGTTTGCTTCGAGTCGGGACCACTGCACTGAAAACAgaAGAAATGTTGGCTGCTTTCAGAGGACTTGCAAGGATTGTGCTAATATTCAGTCTAGTACTGAACTTCACCTTAGGTGCTGACATTGGATGCGAGGACTGGAATATAGATGAAAATTATGGTGTCTGCTGCAAGAAATGCAAGCCAGGGAACCGCTTGGTGGAAACTTGTGGAATAAACCCAGAAAAGCTCTGTACTCCTTGTGAACCTGGAACTTACATTACCAGTcctaatttttattgtttgagaTGTACCCAGTGCATAGGTAATCAGGTTACAGATAAACTGTGCACTATCAGCAGCGATACCGTATGCAAATGCAAGGACGGATATCGGTGTGGAAACAAGAAATGTTCCTTCTGTGTTTATGAATGCAAGGTGGGAGAGGAGCCCACCGAAGAACGATCTTGTAGAAAATGTCCGGAGGGAAAATTCAATGATAAAATCCACAGTATGTGCAAAGAATGGAAGAAAAGTTGTCCTGATGGACAGACTTTGGTCAAAGGAAATGTTACCAGTGACAGTATATGCACATATTTAGAGGAGCCTAGACCAAATTCCTCAACAAGTGGGACAGACAACAAAAATGAACAGACAAGATGGCTATCAGTTTTAATTGCTGCAGGCATGGCAGGTTTGGCTGTCCTTCTCATCGTAGCATCCATCGCTGCATACGTAAaggcacaaaacaaaacagagaagcCAAAAACCGATACCCCTGACGAAGATCACTCAGCCGAGTCTAGGATAATGGTTGTTGATCAGGAAGACTGCAGTTTTCGTCATCCCGAGCAGGAACAGGGTGGCAGCTTAGATTCCATCAATACACAGGACTCCGAGTCTAAACTCATAGTGTGAGTTTAcagaacagtattttttttttatataagacTTTAGCATTGCTACTGGAACAAGGGGACAAAACCCCAGAATATCTACTAAACTGTGAAATACATGACTGGATGTTGATCAGCAGTTCCAGTTGGTGTATCTATGGGAACAAAATTAGTTACGTTTGTGTTCTGTAGGACTTTCATGTCGGAGTTTTTAAGTTGTGAAGTGTGGTGCACCTTAATAACACAAAGATGAGAGGTTGTTAATGTAGGTGTGCAGTAGCAGACAGCATGTCAACACTTTTATGAGAGTAGGCGTCATCTACTGGTGTTTGCGTCACGTTTTTCAGGTCAAAGCCCTTTTGAAATACCCTGGTGGGCTTCCCCACTTTTTCTAAAGAGCATCAAAAAGTTTGGATCAAGAACAAAGTGGATAACATAAGCACAAAGAGGCATGTTTGCACTTTAATCATTGTTAGTTATAgttctttttatgtttatgttcttttatgttttttttattattgtgtggAAATCAACAGCGAGAGAAGAGTAGTTTTTCTGTAGCTAAATGTGGTTGACTGTGTCATGTAGGAAGTGAACTGCTGAAACTAAACATCTGACctaattttttgtgcattttactgttttgtacAAGTAAGCTTGTCAACTCTTGCCTTTCTAAACTCTGGGTTAACAAAATTATGACTTATGGTTCATTCATTCACAATTCATTCTTTACTTGGGGTTAGGAATTTACCCTGGGCATGTAGGTTTCGACTCAAGGTTTCACAATGCTATACTTGTAAATCCTTATTTGCATAGTCAATATCATTGACTAGATGAACTGCTTAAATTAAAGCTTGTCTTGCTCATATGCAGCAGTTTGAAaattccaagcttggtaatccGGGTTATTTGGAAGTTCCGTAAAATGGATATATTAACCTGTAAGACTTACCTATATGCCTACGGGGGAGAACTAGAAATACTTTTCTTACGAAATTCCAttaatctgcttcagaggacatgtgataacccccgaAGGCATATAGTTTAGTTTCATGatggatatatctgatttaaggagttcaaaataatggccgctatccaccagcattaccaagcttgtaAGTTTAAAAAGTCAGTATACACCTTGAATGGCTTTGGGaatgagtaaaatatgctgtaatttt

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224462.1 True 2387 mRNA 0.40 9 9189374 9193433

Neighbor

gene id symbol gene type direction distance location
dvl1a dvl1a,LOC107708824,LOC107570850 coding upstream 2499 9156494 ~ 9186875 (+)
mxra8b LOC107708825,LOC107681995,LOC107570868,LOC107718822 coding upstream 34362 9147923 ~ 9155012 (+)
aurkaip1 LOC107695745,LOC107571831,LOC107708787,LOC107681958,LOC107578281,LOC107718821 coding upstream 42052 9145020 ~ 9147322 (+)
tardbpa tardbpl,tardbp,LOC107570713,LOC107681961,LOC107695779,LOC107716231,LOC107586522,LOC107708842 coding upstream 265103 8919719 ~ 8924271 (+)
pex14 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 coding upstream 499541 8629204 ~ 8689833 (+)
uts2a LOC107571861,LOC107708786,LOC107656544,LOC107695762,LOC107718818 coding downstream 17953 9211386 ~ 9212859 (+)
dnajc11a dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding downstream 325592 9519025 ~ 9526458 (+)
asxl1 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding downstream 335291 9528724 ~ 9543225 (+)
LOC122329090 LOC107586552,LOC107756359,LOC107701702,LOC556451,LOC108275624 coding downstream 381860 9575293 ~ 9577436 (+)
xkr5l zgc:198371,LOC107708814,LOC107656543,LOC107701703,LOC107756376,LOC107571628,LOC107575995 coding downstream 393642 9587075 ~ 9600168 (+)
G155860 slc25a33,LOC107695765,LOC107708828,LOC107681985 non-coding upstream 51184 9135416 ~ 9138190 (+)
G155868 tmem201 non-coding upstream 58299 9128700 ~ 9131075 (+)
G155894 ube4b non-coding upstream 182636 9005042 ~ 9006738 (+)
G155850 kif1b,LOC107681965,LOC107586520 non-coding upstream 249668 8821438 ~ 8939706 (+)
G155984 NA non-coding downstream 19722 9213155 ~ 9213707 (+)
G155985 NA non-coding downstream 20707 9214140 ~ 9214454 (+)
G156034 NA non-coding downstream 390736 9584169 ~ 9584580 (+)
G156047 NA non-coding downstream 429046 9622479 ~ 9639826 (+)
G156096 NA non-coding downstream 609263 9802696 ~ 9808280 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 66981 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 88002 8941031 ~ 9101372 (+)
G155799 NA other upstream 700733 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 855998 8321705 ~ 8333376 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 1883840 7298360 ~ 7305534 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 490313 9683746 ~ 9769620 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 877347 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 1136418 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 1222230 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 1321546 10514979 ~ 10518751 (+)

Expression


Co-expression Network