LOC122328677 (LOC107656548,LOC107756378,LOC107708812,LOC107571042)


Basic Information

Item Value
gene id LOC122328677
gene name LOC107656548,LOC107756378,LOC107708812,LOC107571042
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9615533 ~ 9621872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224521.1
ATCCTCCACCAATCGAACGCACGCCCCGCCCCTTGTGCTAGTAGCGCTTGGTCGACATCAGAAAAGTGAAAGAGTGAAGTGAAGAGTTCTTAAAATTCGGCTAGAAAGCGAGAAATATGTCGTCTGGAGCTCTGTTCCCTAGCTTGGTGTCCGGATCCCGAGGCTCCTCAAGCAAATACCTGGTAGAGTTCCGTGCTGGAAAAATGACCCTGAAGGGCAGCACCGTGACCCCAGATAAGCGCAAAGGACTTGTGTACATTCAGCAAACAGATGATTCGCTCATCCACTTCTGCTGGAAGGACAGATCCTCGGGGAACGTGGAGGATGACCTGATCATTTTTCCTGATGACTGTGAGTTCAAAAGGGTCAATCAGTGCACCACGGGTCGTGTTTTTGTGCTTAAGTTTAAAGCTGGCTCCAAAAGACTCTTCTTTTGGATGCAGGAGCCTAAGACAGATAAAGATGAGGAGTACTGCAGGAAAGTGAACGAATACCTCAACAACCCACCAATACCTGGCACTCTGGGGAGTGGAGGCGGCAGCAGCCATGAGCTGTCTGCTCTTGGAGGTGAAGGTGGCCTTCAGAGTCTCCTTGGTAATATGAGTCATAACCAACTGATGCAACTCATAGGACCAACTGGGCTCGGTGGTCTGGGGGGTCTGGGGGCGCTGGCAGGACCAGGCCTGGCCAGCCTGCTAGGAAGTGGAGTTCCAGCCACTAGCAGCTCATCTTCCAGCTCTCGTAGTCAGTCCACTGCCGCCACTCCATCATCCACGTCGGCCCCCACGCGCCTCGGCCCCTCCCAGGTTCCAACTACACCCATAACTCCATCTGTAACAGTCACAGCCTCACCTGCACCCACCCCCAGCACTCCTGCAGGCCCTGCTCTTTCTGCCGGAGCCACCAGCCCATCTCAGCCCATCCAACTGAGTGACCTGCAAAGCATCTTAGCTACAATGAACGTGCCTTCCTCAGGACAAGGAGTGGACCTTGCAAGTGTTTTGACCCCCGAGGTCATGGCCCCAATTCTCGCTAATGCAGAAGTGCAGCAGAGGCTCCTGCCATACCTCCCGTCTGGAGAGTCTCTTCTTCAAAGCACAGAAGAACTTCAAAACACTCTCACCTCGCCGCAGTTTCAGCAGGCTATGAGTATGTTCAGCAGTGCGCTGGCATCAGGGCAGTTGGGGCCTTTGATGAATCAGTTTGGATTACCTACGGAAGCCGTAGAGGCGGCCAATAAAGGAGatgtgGAAGCATTTGCCAAGGCCATGGAAGGTGAAGGCAAGTCGCATGAAGGAGGAGACAAGAAAGATGATGAGGAGGACATGAGTTTAGATTAGGCAACTCTCTACATGAGCTGCATTcatcatttaaacttttttctcACTGTAGAGCTTCCAGAGCATCATGTTGTAAAGTTAAAggtgatcattttttttctgttataaagggatagttcagacaaaaaaaaattctgtcatttgaaaatgtagatatttttaaagaaacacgaCAGGTTTCTGTTTATCAGTTGAAAATCTACATAAAGTGATCATACCCCTCACAAGAGGATTAAACTACTTGATTCATAAGGATTCATTTTACATCCcctttgggtgtttttttttgtgtttggttACCTTAACTTGTTTTTCAAGGTTTATTTAGAGTTTTATAGGTTTGCAAGggttttttggtgaactattcctttaaacactTAATTCTGTCCCAGTCGCTTTATAAcagtgacagattttttttttctgtattgtgatttaaaaaaaatttacaaaatagaaAAGGGTTAATATGCCAAGTTTAATGTGCTTTCAACATTTCTCTGTTTGAACGTCCTCACATCAGTACTTcctgctttactgttggcattaCGGTGGGACTACCTGTGCATCTGAACTATAGATATTtcacatttccattttaatcAGGAGGTCTTAATACTGTTATTAAAACCCTTTTGCAAATAAAGAAACTTGCATCAACA

Function

NR:

description
PREDICTED: proteasomal ubiquitin receptor ADRM1-like isoform X1

GO:

id name namespace
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG:

id description
K06691 RPN13; 26S proteasome regulatory subunit N13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224521.1 True 2002 mRNA 0.46 10 9615533 9621872

Neighbor

gene id symbol gene type direction distance location
myt1a myt1a,LOC107756375,LOC107708774,LOC107586511,LOC107571600,LOC107701718 coding downstream 53410 9549124 ~ 9562123 (-)
pcmtd2a pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 67191 9543486 ~ 9548342 (-)
thap3 LOC107656551,LOC107708819,LOC107570956 coding downstream 87398 9526592 ~ 9528135 (-)
camta1a camta1a,LOC107708820,LOC107570946,LOC107656552 coding downstream 98817 9215785 ~ 9516716 (-)
slc25a33 slc25a33,LOC107708828,LOC107695765,LOC107681985 coding downstream 473213 9135415 ~ 9142320 (-)
osbpl2a osbpl2a,LOC107571031,LOC107708810,LOC107656546,LOC107549069,LOC107756379,LOC107701722,LOC108433898 coding upstream 581 9622453 ~ 9633367 (-)
LOC122328660 LOC107656533,LOC107571650,LOC107756347,LOC107708771,LOC107549029,LOC107701694,LOC101887148 coding upstream 40541 9662413 ~ 9674637 (-)
si:dkey-261l7.2 si:dkey-261l7.2,LOC107708806,LOC107571115,LOC107549066 coding upstream 139827 9761699 ~ 9764798 (-)
LOC122328653 phip coding upstream 145667 9767539 ~ 9798417 (-)
lca5 LOC107571182,LOC107708802,LOC107671846 coding upstream 190129 9812001 ~ 9822297 (-)
G156056 NA non-coding downstream 2937 9612250 ~ 9612596 (-)
G156054 NA non-coding downstream 7585 9607488 ~ 9607948 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding downstream 13056 9601962 ~ 9602477 (-)
G155979 NA non-coding downstream 426636 9188513 ~ 9188897 (-)
G155968 NA non-coding downstream 462031 9153080 ~ 9153502 (-)
G156235 NA non-coding upstream 56389 9678261 ~ 9815494 (-)
G156245 NA non-coding upstream 160236 9782108 ~ 9831125 (-)
LOC122328702 NA non-coding upstream 246048 9867920 ~ 9877168 (-)
G156261 NA non-coding upstream 329271 9951143 ~ 9952031 (-)
G156264 NA non-coding upstream 394584 10016456 ~ 10017421 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 405569 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 518231 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 688782 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 695763 8913062 ~ 8919770 (-)
G155827 NA other downstream 987142 8625758 ~ 8628391 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 179913 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 209937 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 596601 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 734069 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 742033 10363905 ~ 10367369 (-)

Expression


Co-expression Network