selenoi (si:ch211-197l9.4,selenoi,LOC107656545,LOC107708808,LOC107571075,LOC107549067,LOC107701725,LOC107756381)


Basic Information

Item Value
gene id selenoi
gene name si:ch211-197l9.4,selenoi,LOC107656545,LOC107708808,LOC107571075,LOC107549067,LOC107701725,LOC107756381
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9649897 ~ 9659485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224522.1
TCACGCCACTGCACAGCCGCCGCTCACGCGCAGCACTGCGGATACTGTGCGCCGACACGGTGGTGTATTTCGGTCTGTCTCAGAGCCGTGCTGCGGTCATTATGGCTCTCTACCACTATGTCACCCAAGAGCAAATCTCAGGTTTTGATAAATATAAGtacaGTGCGGTTGACTCCAACCCCCTCTCTATCTATGTCATGCACCCCTTCTGGAACTCAGTAGTGAAGATCTTGCCCACATGGCTTGCCCCAAACCTCATCACGTTTACAGGGTTCATGTTCCTGGTACTCACCTTCAGCTTGCTGTCCTTTTTTGACTTTGACTTTTATGCCTCAGGGGAAGGCCATACACATGTGCCAAGCTGGGTGTGGATAGCTGCTGGTTTGTTCAATTTTCTGGCCTATACCTTAGaTGGTGTAGATGGCAAACAGGCTCGGAGAACAAACTCCAGCACTCCGCTGGGTGAGCTGTTTGACCACGGCCTGGACAGCTGGGCATGTGTGTTCTTCGTCGCTACAGTGTACTCTGTCTTTGGACGGGGGGAGACAGGCGTCAGCgtggtgacactttattttctgttatggGTCGTCCTGTTTTCATTCATACTGTCTCACTGGGAGAAGTACAACACTGGGATTTTGTTCCTGCCCTGGGGCTATGACATCAGTCAAGTGACTATCTCTGTCGTGTACATAATAACAGCGGTGGTTGGTGTGGAAACATGGTACAAACCTGTCATTGGGAATATTCATTACAGAGATCTCTTCACCGTTATGATTGTTGgttgtttatttgttgtaacACTGCCAATGAGCCTCTACAATGTCTTTAAGGCGTACCGTAGTAACACCCTGAAGCACAGTTCGGTGTATGAGGCCTTGTTGCCGTTTTTCTCACCCATCCTCTTGTTTGTGCTGTCTACACTGTGGATCAGTCTCTCTCCTACAGACATCATCGAGAAGCAACCCAGAATCTTTTATCTCATGGTGGGAACAGCCTTCTCCAATGTTACAtgcaaGCTCATTGTATGCCAGATGAGTAATACTCGATGCAAGCCACtgagtttgttgttgttgccaaTGACAGCTGTGGTGTTGCTAGTAATATCTGGGACTTTGCAGAATGGTGAAATTACCGTCCTTTACATATGGACCGCCATAGTCCTCCTCACTCACATACACTATGGAGTATCAGTTGTGAAGCAGCTGAGTGATCATTTTAACATATACGCCTTCTCACTAAAGAAACCCAATTTGGACTGACAAGACGAGGAGAAAATCGGCCTGAAGGCTGCTGAGGTTTAAGCTATCTCAGCATGCTCTTCAGCTAGCCGACTCTCACCAATCACCAAGGGGACACAGCTAACAACAGGAAACCAAATTGTACTGACCAAATGCGCCGCCTTATTCTGAGGATGCTGCTCAATCAACAAATGAATGGAGCTGCACCACAGGGGCCACTGATCCCTGAGGCAGAGCTGTGCCATGGGGCTCACAGAGCCCTGAGGCAGAGCTGCACCACAGGGCCCATTGTGCCCCGAGGTGGAGCTGCACCTTAGAACATATTGGGCTCAGACACAGCTACACCATGGGACCCATTGAGCCCAGGACCTATAGTGCCTCGACTTGCAACTGTGTAACAGGGCCCATTTCTCCCAGAAAAGAGCTGTGTTGTGTTGCTCGCTCCGAACCGAGACGGTTTGGTTTTCTGGTATCTGTGAAGCTGGGGATTTTGCTTGTTTCCTAAGGAAATGTGCTTTTCAGCTGAGATACTAGGAGCCTTGAAcggttaatctcacttacacGCTCTCAGATGAGTCACGCGCAAACCACATGatgatgaacacacacatatgatgtGATGAATGTCTTCAGCTTATTCGATTTgaagattttatttacatttaattttagccTCAATTGCTCaatttggggattttttttttcttctttaaataagaggcattatttaatgtttctatAATGGACAGTATAAACCGAttgtgaaaattaattttcagttaatatgaaacttatttatatgtatgaGGGAACAAGGATGTTAGATGCTTATTTAAATCTATGGTGCTTTTGCTGATCTTTACAATTATACAAAATTTTAACAATGACATAAGACAAATTGAAACAACCACAACTAGTTATCTGTAATATCACACAACTCGAACCACAACCTCATCTGACAGATTGAATTTGTATACCTACTGCAACTGggatatttgtttgtttttgtttcctttttacaTTGGTGATGGTGTGTCCGCGTGCCGATTTTCAGTTTCTTCCAGTTATCTTTTCGTTTGCTTCACTAGTCAGCTTTTATTGAGTTTATTTGTGCTTGAATGAAGAGTGCGCTTCAAACCCTGACCAGGAGAGGGTGCACTTGGAGTGAGCGAGTCAAACCTCGCTCCGTCTATAAACACGATAAAAGCACTAGTCTGTGTGCCACCGACATGTCTGTTAAACCTGCAGGCCGCAGGTGTGATGGCCTGCATCAAACTCATTCCAGCATTTAgtctgttttttgttcttttgttttcgCATCTTTCTGTTTGGTGGACTGAGGGCTTATACACCGGTaataggatttttatttttattttcccacTAGCTTTCTAAAGTATGTCGTGTGAATTGaatgtatgtgtaaatatatggatgagtgagtgtgtgtatgtgcatatgtactgtatgtatatatctgtgtATGTTTTACACTTATACACTCACTCTGGAAACCTCATGCCTCCATGTATTCCGTTTCTCTGAGATGAGACCCGATCGATTGATGTTTAAACATGTACAGTCTATTCATGTCATTATaacattgtattgtttttcatcttgcttttattttaccttCACAATATAATGGGACGCTTATTTCTTATCTTTTAAACACCTTCAGTTTCACAAGAATTGATCAATCACACAGataaattacttattttaacTGCTATATCCAAGTAAattctttttgttattatgtCAATATCTaattactgtcacttttgcaatattttatgttaaagaaTGTGACGACTCGATTCTAAAGGCACTCCTGTCAAATTTAGATCAGAAAGTTTTTAGCCAGCAGATGgcgctttttctttttatgcagtagaactttgttttttttgcatagagTAGTGATAGTGCCTCAGAGGGTCAAAATCACTACGCGAAtcagcacattttaattttttgtagtgCACAGAATATCAGAGGAGGCTGCTGTCAGTGTGGCTGcttgatgtgttttgtttgtgttactATTACCATTTTTAAACTAGGCATCCCGTTTAAATGTTACAGTTTGGTCCGAGGAGGACTATCATCAAGTTCTGTATAACTGCATTTGTAACAAGcaaatgtaacacttttttttaatcttaagaGGGATGGAACCTCTCAAACCTCTGcatattgtaaaacaaaatcCAGCCATGTTGTAACATTATCTTGTGCTGCCCcattaaatgtaagtgtatCCACAGTA

Function

symbol description
selenoi Predicted to enable ethanolaminephosphotransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human SELENOI (selenoprotein I).

NR:

description
ethanolaminephosphotransferase 1

GO: NA

KEGG:

id description
K00993 EPT1; ethanolaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224522.1 True 3516 mRNA 0.42 10 9649897 9659485

Neighbor

gene id symbol gene type direction distance location
si:ch211-197l9.2 LOC107708809,LOC107756380,LOC107656534,LOC107549068,LOC107701723 coding upstream 1428 9635094 ~ 9648469 (+)
cables2a cables2a,LOC107656547,LOC107708813,LOC107756377,LOC107571009,LOC107549038,LOC107701719 coding upstream 34401 9601928 ~ 9615496 (+)
xkr5l zgc:198371,LOC107708814,LOC107656543,LOC107701703,LOC107756376,LOC107571628,LOC107575995 coding upstream 49729 9587075 ~ 9600168 (+)
LOC122329090 LOC107586552,LOC107756359,LOC107701702,LOC556451,LOC108275624 coding upstream 72461 9575293 ~ 9577436 (+)
asxl1 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding upstream 106672 9528724 ~ 9543225 (+)
tbx18 tbx18,LOC107708785,LOC107656541,LOC107756382,LOC107701724 coding downstream 37155 9696640 ~ 9705684 (+)
irak1bp1 irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383 coding downstream 99382 9758867 ~ 9760617 (+)
sh3bgrl2 sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335 coding downstream 163324 9822809 ~ 9830190 (+)
rps12 rps12,LOC107671850 coding downstream 174839 9834324 ~ 9837182 (+)
LOC122329334 NA coding downstream 175611 9835096 ~ 9835170 (+)
G156047 NA non-coding upstream 10071 9622479 ~ 9639826 (+)
G156034 NA non-coding upstream 65317 9584169 ~ 9584580 (+)
G155985 NA non-coding upstream 435443 9214140 ~ 9214454 (+)
G155984 NA non-coding upstream 436190 9213155 ~ 9213707 (+)
G155860 slc25a33,LOC107695765,LOC107708828,LOC107681985 non-coding upstream 511707 9135416 ~ 9138190 (+)
G156096 NA non-coding downstream 143211 9802696 ~ 9808280 (+)
G156098 NA non-coding downstream 153732 9813217 ~ 9815309 (+)
G156109 NA non-coding downstream 221277 9880762 ~ 9973534 (+)
LOC122328703 NA non-coding downstream 225560 9885045 ~ 9888379 (+)
G156108 sgk1 non-coding downstream 262656 9922141 ~ 9923225 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 527504 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 548525 8941031 ~ 9101372 (+)
G155799 NA other upstream 1161256 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1316521 8321705 ~ 8333376 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 2344363 7298360 ~ 7305534 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 24261 9683746 ~ 9769620 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 411295 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 670366 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 756178 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 855494 10514979 ~ 10518751 (+)

Expression


Co-expression Network