tamalin (grasp,LOC107723769,LOC107594022,LOC107549045,LOC107671830)


Basic Information

Item Value
gene id tamalin
gene name grasp,LOC107723769,LOC107594022,LOC107549045,LOC107671830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10162782 ~ 10176042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224524.1
ATCCGTCCGCAGATGCTGCTGTTGATACTAAGCTAGAGCTGGGGGTTATTGCACAAGTCGGAGTGCTGGCTGGTGGCGAGTGGGTGGCTTTTCACCCACACTCAGTACTTTTTATCTCTCGCTCTTCTTTCATGTACTGTTGCGTTCTTATCGAGTGACACGCGGACTATGAAAAATATGACTTTCCGACGTGTAAAGAAGCTGAACTCGAGCGAGCCGGACAGCGGGTCGCTGTGTCATGACAGTACGGAGATCTACTTTGCGTCCTCCAAATCGGACAGCTGTGGGACCGTGGACCGAGGAAACTCCACTGAGGTTTATAATTATAAGACTCTCGCTTACTCTGGAGGGACCCTACCGAGGAACTTTAAAAAGAATGGTGGGCTGCAAAAATGGAAGCCCCTCTCACACTCTCCAGAACCGCTAAGAAAAACAGTGATCCTGatgaagaaagaggaagaggccTTTGGCTTTGAGATCCAGACATATGGGCTGCATCACCAGAGTGAGAACTCGGTGGAGATGTGCACCTTTGTTTGCAAAGTCCATGAAGACAGTCCTGCCCAACTTGCAGGACTTAAAGTCGGAGACACGATTGCCAGCGTGAATGACACTTCTGTGGACGGCTTTCGCCATAAAGAAATCGTCCAGCTCATTAAATCATCAGGCAACAGCATTAGGCTAGAAACTGTGTATAGCGACTCTATACGAAAAGCAGAATTGGAAGCTCGGCTGCAGTATCTAAAGCAAACCTTGCATGAGAAATGGGATGAATACAGATCTCTAATGGTGCAGGAGCAGCGGCTTGTGCATGGCATCGTCATGAGTGATGTGGCGGTGTACGAGTCTCTGGAGTCCGCCGGGTTATACGGTAGTCTGGGAGCTCCGAGCCCTGCTGCCATGCGCGCGTTACGTGGCACTGAGAGCACGAGCAGCAGCGTCAGCCATCTTAGTGCTGCCACAACTGAGGACGACCCCCTCTACCAAACCTGCATCTTCCAGGGGGAGCGTTCCAGCAACGACGAGCTTGACGCCAAACAAGAGAAGACTCAAAGCGGCCGTCCGCGGCTCATTCGTCCTGCCAGCGAGCTCTTCACTACTGCCAAGACCACCCTGACCCGCAGCGCCAGCACACGCAGTTACCTGAGGGGCCAGCCGCCGTCGTCCTCGGTGCCTAACGGAGAGAAACAGCAGTGCGGCGGGTTCAGCACACTGCAGCGCAAACCCAAACAGAAGAGCTTCAGGCGGAGGCTGTTGAAGTACATTCCCGGACTCAACCGACCCCTGGAAGAAGAGGAAAGCAAACTGTGAGAAACAAAAGCGAACTGAGAATTCAAAGACTCCCTTTGCCAAAGACTAAATGTTTAAAACGAGCGAAAAGGAAACCGAAGACCAAAAGTGGACGCCAAGATAAACCAAAGAAAAATCCAGTGATTATAAAAGTgttgttttctgagaaaaattAAGAGCCTTTTTGGTCAAGTTGGTAAATGACTAATTGGCTAAAGATTGGTTGGGCaactttaaatattagttttagaCTTGAAGTATTAAGATTAGTCTAAAATGCTGAGAATATGTGGATGTCTGTTTGTCGCTggaatattgtttaaaaatctgtaacataatataaaaattaacaagTTAACGAGCCCAAAAAATGTGGACCAGCGTGTCTTAATGACTTTGTCAACTCCTTTAACTAGTTTATTAACATGGTCTAACTTTATTTCCTGGTGCACATTTTGCATCTAATTCAAGAAGCAaacatttgtacatattttgttcatgtttaagttatttatttaatgttttgtttgtttgttttttttcccttttttgtaattttgttaattgaaGATGTACAaaatgaaggattttttttagcaaaatactTTGGTCCTGAAGGATATTTAAGTGCCTTTtttggcatgtgtgtgtgtaaataactttttgttttttgtgtgaaaaatgtaGATTGAAAATAAAGGATGGTATTTTTCCTCAGGTTCTTTAA

Function

symbol description
grasp general receptor for phosphoinositides 1-associated scaffold protein

NR:

description
general receptor for phosphoinositides 1-associated scaffold protein-like

GO: NA

KEGG:

id description
K24053 GRASP; general receptor for phosphoinositides 1-associated scaffold protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224524.1 True 2017 mRNA 0.45 8 10162782 10176042

Neighbor

gene id symbol gene type direction distance location
nr4a1 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 coding downstream 17330 10140150 ~ 10145452 (-)
rprm3 zgc:92658,LOC107701713,LOC107671842,LOC107723728,LOC107572774,LOC107549031,LOC107756367 coding downstream 30623 10131006 ~ 10132159 (-)
letmd1 letmd1,LOC107572784,LOC107723741,LOC107671881,LOC107701748,LOC107756404,LOC107549047 coding downstream 41414 10117064 ~ 10121368 (-)
ormdl2 ormdl2,LOC107549034,LOC107701708,LOC107671901 coding downstream 99784 10059991 ~ 10062998 (-)
nlrp12l si:dkey-126g1.7,LOC107671883,LOC107723749,LOC107572771 coding downstream 112868 10041448 ~ 10049914 (-)
dgkaa dgkaa,dgka,LOC107549042,LOC107671885,LOC107701752,LOC107594021,LOC107756407 coding upstream 1144 10177186 ~ 10202807 (-)
rnf41 rnf41,LOC107723732,LOC107756409 coding upstream 27997 10204039 ~ 10212427 (-)
LOC122328770 pifo coding upstream 67886 10243928 ~ 10280539 (-)
LOC122328780 NA coding upstream 167208 10343250 ~ 10346092 (-)
LOC122328599 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding upstream 256722 10432764 ~ 10447218 (-)
G156313 NA non-coding downstream 45827 10112617 ~ 10116955 (-)
G156283 NA non-coding downstream 103479 10058011 ~ 10059303 (-)
G156278 NA non-coding downstream 109233 10052526 ~ 10053549 (-)
G156264 NA non-coding downstream 145361 10016456 ~ 10017421 (-)
G156261 NA non-coding downstream 210751 9951143 ~ 9952031 (-)
LOC122328389 NA non-coding upstream 115423 10291465 ~ 10294043 (-)
G156341 NA non-coding upstream 172099 10348141 ~ 10351881 (-)
G156364 NA non-coding upstream 210912 10386954 ~ 10388615 (-)
G156452 NA non-coding upstream 364857 10540899 ~ 10542887 (-)
G156459 NA non-coding upstream 491915 10667957 ~ 10675579 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 329100 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 354413 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 952818 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 1065480 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 1236031 8921564 ~ 8926751 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 42431 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 179899 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 187863 10363905 ~ 10367369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 499638 10675680 ~ 10678150 (-)
G156746 NA other upstream 924702 11100744 ~ 11105223 (-)

Expression


Co-expression Network