rnf41 (rnf41,LOC107723732,LOC107756409)


Basic Information

Item Value
gene id rnf41
gene name rnf41,LOC107723732,LOC107756409
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10204039 ~ 10212427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224535.1
CAGCAGCAGATTCAGTCAGACTTCATCCGCTCGGCTCAGGAAGAGAAATCGGCCATCTCTCAGATCACTGCAAATATCACGGGCTTTAAATCCAGAAATCACATTAAGCCTAGGAGGAACAGCGCGATTTACTGGAACAGGGGGATGTTCGGTCTTACATCGTAAGGAAGATCGCCTTTCCCACCGGACACATGAGGACGACTCATTGTACAGGGATCATGAGGGCTGCGCTGTCGTGAGGTATCAAAGGATTCTGGTAATGTGCCATGGGGTACGACGTCACCAGGTTCCAAGGAGAGGTGGACGAGGATCTGTTATGTCCCATCTGCAGCGGGGTGCTGGAGGAGCCAGTACAGGCCCCGCATTGTGAGCATGCTTTCTGTAACGCCTGCATCACACAGTGGTTTGCACAGCAGCAGATCTGCCCTGTGGACCGTACCGTGGTGACTCTTGCCCATCTTCGACCCGTTCCCAGAATCATGCGTAACATGCTTTCCAAGCTGCAGATCTCCTGTGATAACGCCGGATTCGGCTGCACGGCCACCCTTCGGCTCGACCAGCTGCAGTCACATCTCAAGGACTGCGAGCACAACCCTAAACGACCCGTCACGTGTGAAGAAGGCTGCGGGCTAGAAATGCCAAAAGATGAGATGCCCAATCACAACTGTATTAAACATCTACGCAGCGTGGTGCAGCAACAGCAGACCAAGATTGCAGACCTAGAGAAGACCGCAGCTGAGCATAAGCACCAACTTGCAGAACAGaaacGCGACATCCAGCTCCTGAAGGCTTACATGCGAGCAATACGAAGCGCAAACCCTAACTTACAGAACCTGGAGGAAAGCATAGAGTACAATGAGATCCTAGAGTGGGTGAACTCTCTCCAGCCCGCTCGCGTGACCCGCTGGGGAGGAATGATCTCCACACCCGACGCCGTCCTCCAGGCCGTCATCAAACGATCGCTCATAGACAGTGGATGCCCGTTGTCGATCGTTAATGACCTCATCGAGAACGCCCACGAGCGTAACTGGCCCCAAGGCTTGGCCACGCTGGAGACACGGCAGATGAACCGCCGATATTACGAAAACTATGTGGCCAAACGCATTCCGGGTAAGCAGGCCGTGGTGGTGATGGCCTGTGAGAACCAGCACATGGGAGAAGATATGATTCTGGAGCCGGGGTTGGTTATGATCTTCGCTCACGGCGTTGAGGAGATCTTATAGTCTGTACATAGGTGGGTGCCAGTGATGAAAAGCAGAAAGGGGTTTACAGAGACTGAATTGATTTCcccctctaaaaaaaaaaaaaaattctcagttCATCCCACTAAAAATATCAAGACCTCTTCGGCAGTTGTTACCTCAAATTTAAAGGAAGGACACAAGCAGAAAAGGTTCTCCGCTCGTGGACCTCCAGCATTCCCTATTCTCTTTGCCTTAAatggacatttttcaaaaagtgGACCCTAATGACAAAAACCAACTTGAAAACATTATCAGGGACGATGGTACAcatatgttttaacattaacattgaaATCAAAAAGGATTTGAAGTGATGTCTAATTCCCCCTTTAACATTATTTCCCTCTTGAGAGCAAATATGTGTCACTCGCAGCTTAAGACAAGTTAAGATTCTTGTAAATACAGATGATAAAGAAATATAGACAAATATGCTATCTGTTCTTGTTCTAATAGAGTAGTGGACATTTTTGCTGTCTTTCATCTCAGTTTGCTATTTAGAGTAGAGTGTTTTAACTACCACGGATctcaatctttctttcttttttttttttcttaatagaGCTATGATTAAAGTATGCTAGATAAAGAACTCTGCTCGGTGTTTGCACTGTGTGGTGATTGGAAAAACAAGATGTCATGAATCTCGATTTTGtgaagatgtttgtttttcttgagtGGAAAGATGATGACGGAAATCAACAGCTGATTTTCTggttttcaattacatttttttccagaaataactttttattttatttttattttctgccgGCATCACTGGCTTATAAATCAGAACCAGATTTTTCTTCTCCAGCATGGTCTTGGTGACCTCAAAGTTTTTTTGTCTAGAATTTCACCATATGCAAAATCATAAATGATGGATGAAAAGCTTATGAAtcaatatgaagtaaaaaactTTGTGAAAAATGACCAACTTACcactgatgtaaaaaaaaaaaaaaaaaaaaaaacatgatgtcTGTGGGATCTCCTGCAGATGCTCAACCATATCTGGACCTTTTTACTGTGGTTTACATCGGAACTGTTTTTTATCCATCATTTGCCACAGCACCTCTTGAtgaatttcaaataataaagaGAGATGGAATGGttgaatgtttgtgtatattgtgCAATTGATTCCTGGATAAGTGGAtaagaatttattttacatattttacgtACCTTTGTTGTATATAGTTGATTTGAGAATCGGTTTAATTTGTGTTGTACGATAGCTGTCTCTGCAACcaaagtgttttattgtgttgtatGCACATCgtgcttgcttttttttgtttgttttgttggtgTTGTCGTTGCGCGGACACCGAAAATGTAAGTTCAGCGATTCTAAAATGTATCTTATTGTGTGTCATCTGCTTCAGTGTTACATAGACCTGAATGCTCATTGCGTTGTTTACAGTAGCTTCTTTGCAAATGTTGTTCGATGAGCTGAAAACTAAGGACCGAGAATGTTTTACTCTGCAATATTCAGCCAGGTCTGTGTGTCAATTAGGGAGAAATGTCTGTGAACTTTGCCTTATCACACTTCATCCGATGCTTCACTGCATGACCGCTGTGTAACGTGCCACATGGCTTCTCTGCACATCGTCTCGCAAACGCACCCTGAAGCTGGAGAGGTTAAACATGACCCAGCGTGTTTCACTTCTTGGTTCTAATGAATCTGAACACCTTCCGTATcgttcataaaataaaagttcacaTTTACGCATCGTCTCTTACTGGACACGCAAGACTTTTTTGACTCTCAGGTTTTATCATCTGATAACGGGGATGAAACGTTCGAAGAGCTCGTGTTTCTCGCTGCAGCATTGTCCGTGGATGTGGCattcttctgtttgtttgtttttgtcttttattcttGCTTTTGTGCTGTGGGTTACTGacagaatatgaataaatatcaaTGATTTTGCAATACGA

Function

symbol description
rnf41 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including germ ring; muscle; nervous system; neural crest; and optic cup. Orthologous to human RNF41 (ring finger protein 41).

NR:

description
E3 ubiquitin-protein ligase NRDP1

GO:

id name namespace
GO:0097191 extrinsic apoptotic signaling pathway biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
K11981 RNF41, NRDP1; E3 ubiquitin-protein ligase NRDP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224535.1 True 3191 mRNA 0.43 7 10204039 10212427

Neighbor

gene id symbol gene type direction distance location
dgkaa dgkaa,dgka,LOC107549042,LOC107671885,LOC107701752,LOC107594021,LOC107756407 coding downstream 1232 10177186 ~ 10202807 (-)
tamalin grasp,LOC107723769,LOC107594022,LOC107549045,LOC107671830 coding downstream 27997 10162782 ~ 10176042 (-)
nr4a1 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 coding downstream 58587 10140150 ~ 10145452 (-)
rprm3 zgc:92658,LOC107701713,LOC107671842,LOC107723728,LOC107572774,LOC107549031,LOC107756367 coding downstream 71880 10131006 ~ 10132159 (-)
letmd1 letmd1,LOC107572784,LOC107723741,LOC107671881,LOC107701748,LOC107756404,LOC107549047 coding downstream 82671 10117064 ~ 10121368 (-)
LOC122328770 pifo coding upstream 31501 10243928 ~ 10280539 (-)
LOC122328780 NA coding upstream 130823 10343250 ~ 10346092 (-)
LOC122328599 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding upstream 220337 10432764 ~ 10447218 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding upstream 237058 10449485 ~ 10456918 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding upstream 304289 10516716 ~ 10521072 (-)
G156313 NA non-coding downstream 87084 10112617 ~ 10116955 (-)
G156283 NA non-coding downstream 144736 10058011 ~ 10059303 (-)
G156278 NA non-coding downstream 150490 10052526 ~ 10053549 (-)
G156264 NA non-coding downstream 186618 10016456 ~ 10017421 (-)
G156261 NA non-coding downstream 252008 9951143 ~ 9952031 (-)
LOC122328389 NA non-coding upstream 79038 10291465 ~ 10294043 (-)
G156341 NA non-coding upstream 135714 10348141 ~ 10351881 (-)
G156364 NA non-coding upstream 174527 10386954 ~ 10388615 (-)
G156452 NA non-coding upstream 328472 10540899 ~ 10542887 (-)
G156459 NA non-coding upstream 455530 10667957 ~ 10675579 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 370357 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 395670 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 994075 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 1106737 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 1277288 8921564 ~ 8926751 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 6046 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 143514 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 151478 10363905 ~ 10367369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 463253 10675680 ~ 10678150 (-)
G156746 NA other upstream 888317 11100744 ~ 11105223 (-)

Expression


Co-expression Network