armc1l (armc1l,LOC107723767,LOC107671895,LOC107571378,LOC107701743,LOC107756398,LOC107549053)


Basic Information

Item Value
gene id armc1l
gene name armc1l,LOC107723767,LOC107671895,LOC107571378,LOC107701743,LOC107756398,LOC107549053
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10037867 ~ 10041353 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224536.1
GCCAATCGGCTTGAAGTATTTAGAAACGTCATCGGGGGCCTTCAaccaattgttttgtttaaagagaaGCAGTGGGAAGTTTTGTATTTGGAGCGTACCGTGCGCTGTTATAAAGTAGCGGTGGTGACATCCACAAAAATGATGGACGCATTATCAGTAGTCACACAGCTGCGGGACCTCGCATCTGAACCACAGAATCGGGAGGCGATTGTTCAGGACCAGGGTTGCCTTCCAGGGCTAGTGTTGTTTCTTGACCACAAAGACCACAAAGTGCTCTTTGCCACCCTCCAGGCTTTGCGGTACCTGGCTGAATCACCCCGCAACATCAACACCATGAAAAATGAGCTTGGCATGATGGTCAGCCTGGAGACACTAATGGAGAgGACTAGTATGACAACTGATATTACAGACCTTGCAGAAGAGGTGTATGGTGTGTTGACTTCTCAAACACAGAAACCAGCTTGTCAGACTCCAGAGCAACAGAAAAGGAAGAACAAACCCCAGTTCTTCATTAACAGCTCCAACAAGAAGGCTAAATCAGTTACCCTGCATATACAAGGCTTGGATGGGGCAGATcaaagaggtgtgtgtgaggaggCCCTTTTGAGAGTCAAAGGAGTAATTAGCTTCACCTTCCAGATGGCTCTAAAGAGATGTACTGTACGCATCCGTGCCGACCTGCCCACTGAGAGTCTGGCCACTGCCATTGCTGCCACAAAAGTGCTTTCGGCTAAGCAGgtcttgaaaaatgaaaacggaGAAGAGGTTCTCATTCCGCTCAGCACCTCTGGCTCAAAAGTAGAAGAGAATTCCAATCTGCCTGATTACCTGCCAGAAGATGAGAGCCCGGAGAAAGAGCTAGACCGTGCTGTGTCCCGTACTGGTGCTAAACAAGACACCGGTGGCAGCTGGCTGAACACAGCAGCCAGTTTCCTCACTAAAACCTTCTACTGGTAAAGACTAAGTTTCACAGACTTTTCCTAGCTGTTTTGGGACCTCAACATTTTTAAGACAGATCAGCTTAGAAGAGCAAGTTTCACCAATATTGGATCATAAAGCACCAGTGGAAGGTCAGGGAACTGACAAATGGCGTTGGTCAATTTATGAGCAAATGTATCTTGTCACAACTCTGTACTGATATGTAGATGCTGAGATTATGCTGTACATTTATATAGGTTTATGTATTTCCTCCATGTAAGGAACCAAAATTTCCTGTTTTTTGCTGTCGAGTTTGTCTGCTGAATCTTCTTTCCTCCTGATTTCTTGTAAATATTTCCATTGTGTGTTATAAGGGGAAAGTATCTATACTGTGTGTCATCTAACATTGGAAACGActgaaaaacagattaaatgtttaatgctgttttgtgtaaaataaaggtttggaaGGAAGAGTA
>XM_043224537.1
CCGTGCGCTGTTATAAAGTAGCGGTGGTGGTGAGTAACATCCACAAAAATGATGGACGCATTATCAGTAGTCACACAGCTGCGGGACCTCGCATCTGAACCACAGAATCGGGAGGCGATTGTTCAGGACCAGGGTTGCCTTCCAGGGCTAGTGTTGTTTCTTGACCACAAAGACCACAAAGTGCTCTTTGCCACCCTCCAGGCTTTGCGGTACCTGGCTGAATCACCCCGCAACATCAACACCATGAAAAATGAGCTTGGCATGATGGTCAGCCTGGAGACACTAATGGAGAgGACTAGTATGACAACTGATATTACAGACCTTGCAGAAGAGGTGTATGGTGTGTTGACTTCTCAAACACAGAAACCAGCTTGTCAGACTCCAGAGCAACAGAAAAGGAAGAACAAACCCCAGTTCTTCATTAACAGCTCCAACAAGAAGGCTAAATCAGTTACCCTGCATATACAAGGCTTGGATGGGGCAGATcaaagaggtgtgtgtgaggaggCCCTTTTGAGAGTCAAAGGAGTAATTAGCTTCACCTTCCAGATGGCTCTAAAGAGATGTACTGTACGCATCCGTGCCGACCTGCCCACTGAGAGTCTGGCCACTGCCATTGCTGCCACAAAAGTGCTTTCGGCTAAGCAGgtcttgaaaaatgaaaacggaGAAGAGGTTCTCATTCCGCTCAGCACCTCTGGCTCAAAAGTAGAAGAGAATTCCAATCTGCCTGATTACCTGCCAGAAGATGAGAGCCCGGAGAAAGAGCTAGACCGTGCTGTGTCCCGTACTGGTGCTAAACAAGACACCGGTGGCAGCTGGCTGAACACAGCAGCCAGTTTCCTCACTAAAACCTTCTACTGGTAAAGACTAAGTTTCACAGACTTTTCCTAGCTGTTTTGGGACCTCAACATTTTTAAGACAGATCAGCTTAGAAGAGCAAGTTTCACCAATATTGGATCATAAAGCACCAGTGGAAGGTCAGGGAACTGACAAATGGCGTTGGTCAATTTATGAGCAAATGTATCTTGTCACAACTCTGTACTGATATGTAGATGCTGAGATTATGCTGTACATTTATATAGGTTTATGTATTTCCTCCATGTAAGGAACCAAAATTTCCTGTTTTTTGCTGTCGAGTTTGTCTGCTGAATCTTCTTTCCTCCTGATTTCTTGTAAATATTTCCATTGTGTGTTATAAGGGGAAAGTATCTATACTGTGTGTCATCTAACATTGGAAACGActgaaaaacagattaaatgtttaatgctgttttgtgtaaaataaaggtttggaaGGAAGAGTA

Function

symbol description
armc1l Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Is expressed in digestive system; pectoral fin musculature; proliferative region; and retina. Orthologous to human ARMC1 (armadillo repeat containing 1).

NR:

description
PREDICTED: armadillo repeat-containing protein 1-like isoform X2

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224536.1 True 1397 mRNA 0.45 7 10037867 10041353
XM_043224537.1 False 1307 mRNA 0.45 7 10037964 10041353

Neighbor

gene id symbol gene type direction distance location
myb myb,LOC107701741,LOC107549054,LOC107671892,LOC107756348,LOC107571350 coding upstream 32221 9995797 ~ 10005646 (+)
tbpl1 tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734 coding upstream 129005 9904223 ~ 9908862 (+)
rps12 rps12,LOC107671850 coding upstream 200685 9834324 ~ 9837182 (+)
LOC122329332 NA coding upstream 202388 9835395 ~ 9835479 (+)
LOC122329334 NA coding upstream 202697 9835096 ~ 9835170 (+)
si:dkey-126g1.9 LOC107549036,LOC107723751,LOC107756364,LOC107572772 coding downstream 8587 10049940 ~ 10053458 (+)
nemp1 LOC107756399,LOC107701744,LOC107549035,LOC107671884,LOC107572777 coding downstream 12293 10053646 ~ 10057473 (+)
pan2 pan2,LOC107723747,LOC107756401 coding downstream 26100 10067453 ~ 10082559 (+)
trappc6b trappc6b,LOC107572779,LOC107756365,LOC107701709,LOC107549033 coding downstream 49074 10090427 ~ 10092452 (+)
tpx2 NA coding downstream 51415 10092768 ~ 10098638 (+)
G156142 NA non-coding upstream 43214 9994446 ~ 9994653 (+)
G156109 NA non-coding upstream 64333 9880762 ~ 9973534 (+)
G156108 sgk1 non-coding upstream 114642 9922141 ~ 9923225 (+)
LOC122328703 NA non-coding upstream 149488 9885045 ~ 9888379 (+)
G156098 NA non-coding upstream 222558 9813217 ~ 9815309 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 93502 10134855 ~ 10145461 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding downstream 120645 10161998 ~ 10163976 (+)
LOC122328771 NA non-coding downstream 213433 10254786 ~ 10256406 (+)
G156217 NA non-coding downstream 222637 10263990 ~ 10346054 (+)
G156169 NA non-coding downstream 345607 10386960 ~ 10387500 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 268247 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 915474 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 936495 8941031 ~ 9101372 (+)
G155799 NA other upstream 1549226 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1704491 8321705 ~ 8333376 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 29427 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 288498 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 374310 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 473626 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 509744 10551097 ~ 10554720 (+)

Expression


Co-expression Network