tcf21 (tcf21,LOC107571274,LOC107723756,LOC107756361,LOC107671849,LOC107701707,LOC107549058)


Basic Information

Item Value
gene id tcf21
gene name tcf21,LOC107571274,LOC107723756,LOC107756361,LOC107671849,LOC107701707,LOC107549058
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9883437 ~ 9884854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224541.1
CTGAGCAGGTTTAGTGCTTGCTTCCACTAAGAGTGTGTTGCCGCGTGCAGGGGTTACGCCCCTGAGCGCGAGAGATAAATGCTAAGATCCTTTGGCTCGCGAGTTGCAAGTTGCTCTCATTCCCCGCTCGCGCATGACGCGTATCTGCTCTGAAGGCAGTCGCGTTATCTTCAGGTCCCTTCAGAGAGCCACAATCTCAAGTCTCCTCGTGCTTACTTTTTGTCTGCTACATCTTCGTCTTCAGCTCAACATGTCCACCGGCTCCATCAGCGATGTGGACGAATTTCACGAGTCTGAGCTGCTGGATGGTCTTTTGAAATTCGGTTCCGGTAAAGATCCGGGGACGTCAAACGAGAGCACGGAGGACAGTTCCAACTGCGAAGGGGCATCGGTTACCGAATGTACGGGGAAAAGGCGCAAATCGGCCGCCATGCGTAAATCGGCACCTAATGGCGTGGCCCAGGAGGGCAAGCAGGTCCAAAGGAACGCGGCGAACGCGCGCGAGAGGGCGAGGATGCGCGTGCTGAGCAAAGCCTTCTCCCGGTTGAAGACGACGTTACCGTGGGTTCCGCCGGACACCAAACTCTCCAAGCTGGACACGCTGCGGCTGGCCTCCAGCTACATCGCGCACCTGCGACAAATACTCGCCAACGACAAATACGAGAACGGCTACATACATCCAGTCAACCTGacgTGGCCCTTTATGGTGGCGGGCAAACCGGAAAACGAACTCAAAGAAATGCTGAATTCTACACGTTTATGTGGGACTACAGCGTCCTGAGGCACCCGATGGACTTAAAACAAGGAcctatttgaaatattttaattaaacaaaa

Function

symbol description
tcf21 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Acts upstream of or within artery development and branchiomeric skeletal muscle development. Located in nucleus. Is expressed in several structures, including mesenchymal cell; mesoderm; pericardial region; pharyngeal arch; and proepicardial cluster. Orthologous to human TCF21 (transcription factor 21).

NR:

description
transcription factor 21-like

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0007530 sex determination biological_process
GO:0048536 spleen development biological_process
GO:0060425 lung morphogenesis biological_process
GO:0072162 metanephric mesenchymal cell differentiation biological_process
GO:0060426 lung vasculature development biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060435 bronchiole development biological_process
GO:0048286 lung alveolus development biological_process
GO:0060766 negative regulation of androgen receptor signaling pathway biological_process
GO:0060008 Sertoli cell differentiation biological_process
GO:0060539 diaphragm development biological_process
GO:0072277 metanephric glomerular capillary formation biological_process
GO:0060021 roof of mouth development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0005634 nucleus cellular_component
GO:0070888 E-box binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224541.1 True 836 mRNA 0.54 2 9883437 9884854

Neighbor

gene id symbol gene type direction distance location
eya4 eya4,LOC107671847,LOC107756388,LOC107701730,LOC107571227 coding downstream 17650 9837435 ~ 9865787 (-)
lca5 LOC107571182,LOC107708802,LOC107671846 coding downstream 61140 9812001 ~ 9822297 (-)
LOC122328653 phip coding downstream 85020 9767539 ~ 9798417 (-)
si:dkey-261l7.2 si:dkey-261l7.2,LOC107708806,LOC107571115,LOC107549066 coding downstream 118639 9761699 ~ 9764798 (-)
LOC122328660 LOC107656533,LOC107571650,LOC107756347,LOC107708771,LOC107549029,LOC107701694,LOC101887148 coding downstream 208800 9662413 ~ 9674637 (-)
slc2a12 slc2a12,LOC107571322,LOC107701735,LOC107549056,LOC107671860 coding upstream 23934 9908788 ~ 9917655 (-)
sgk1 sgk1,LOC107571333,LOC107723736,LOC107549055,LOC107756394,LOC107701736 coding upstream 35193 9920047 ~ 9941008 (-)
aldh8a1 aldh8a1,LOC107723725,LOC107671839,LOC107756363,LOC107701738 coding upstream 78140 9962994 ~ 9968091 (-)
hbs1l hbs1l,LOC107723734,LOC107756395,LOC107701737 coding upstream 86648 9971502 ~ 9994574 (-)
mtfr2 mtfr2,LOC107723766,LOC107671894,LOC107571368,LOC107549052,LOC107701742 coding upstream 147683 10032537 ~ 10039425 (-)
LOC122328702 NA non-coding downstream 6269 9867920 ~ 9877168 (-)
G156245 NA non-coding downstream 52312 9782108 ~ 9831125 (-)
G156235 NA non-coding downstream 67943 9678261 ~ 9815494 (-)
G156056 NA non-coding downstream 270841 9612250 ~ 9612596 (-)
G156054 NA non-coding downstream 275489 9607488 ~ 9607948 (-)
G156261 NA non-coding upstream 66289 9951143 ~ 9952031 (-)
G156264 NA non-coding upstream 131602 10016456 ~ 10017421 (-)
G156278 NA non-coding upstream 167672 10052526 ~ 10053549 (-)
G156283 NA non-coding upstream 173157 10058011 ~ 10059303 (-)
G156313 NA non-coding upstream 227763 10112617 ~ 10116955 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 49755 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 75068 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 673473 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 786135 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 956686 8921564 ~ 8926751 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 333619 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 471087 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 479051 10363905 ~ 10367369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 790826 10675680 ~ 10678150 (-)
G156746 NA other upstream 1215890 11100744 ~ 11105223 (-)

Expression


Co-expression Network