tbpl1 (tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734)


Basic Information

Item Value
gene id tbpl1
gene name tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9904223 ~ 9908862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224542.1
GCGCTGTAGAGTGTTTGACCGGACAGTTTCTCATCTCGCGCAGGAACTGAGGCATCCTTGACAACAATCGCCGGTTGTCTGTTGTTTGCATGTTGACGCTTTTGTTTACTTTTGGTGCTCTTCCGacctttaatttttatttatataggttTCTAAACATTTGAACACTCGTTTTAAGATAGCCATCACaacgttttataataataagattGTCTCGGACGCACCGTTTGACGCCCCATATCGGTCAAgttttgttttgtaacgTGACATGCATCTGTAAAAGGGTTGTCAAGCTTAAAACATCTACAGCGGCTCCATGGAACCCAGTAATGATGTGGCGCTTGATATCATCGTTACCAATGTCGTATCTGTCTTCAGAACCAGGTGCCATCTAAACCTGCGCACCATCGGCCTAGAGGGGACTAATGTCATCTACAAGCCTGAAGTGGGAAAAGTTTTGATGAAGCTGCGAAAACCACGTATCACTGCCTCTATATGGTCATCAGGGAAAATTATTTGCACTGGAGCAACAAGtgagGAGGAAGCCAAACTAGGAGCTCGACGGTTGGCCCGCTGCCTGCAGAAGATTGGATTCAAGGTGAGGTTCTCGGACTTCAAGGTTGTCAATGTGTTAGCAGTGTGCTCCTTGCCTTTTCAAATCCGTCTCATTGAGTTCACTAAGAATAACCGCCCTATTGCCAGCTATGAACCCGAGATCCACCCTGCTGCGTCATACAGAATTAAACACCTCAGGAGTACAGTGCAGGTCTTTTCCACAGGCAATATCACTGTTACAGGACCAAATGTGCAGAGCGTGGCGTCCGCTGTGGAGCAGATTTATCCTCTGCTGTTTGAGTGTCAGAAAACACTGtcataaaccacacacacacacacacacacgcaggcaccggtttgaaacaaaaaagcacCTTATCATTGAATGTTTTAAGGCTTGTAACTGTTGTACTGTATGTGTCTCCAAGGCAGCTTTTGCCATTTCACGTCCAAGCGGGTCTGGGTCGTGTGTTTTCAGAGTCATGCCTTTGAACCTTGACTTTGGTGTTCGGACCCCACGTTGATTAATGACGACCTCTTAAAGCTCAGAAGAGGACCATTAGTGCATTGACATTGTGTTGCTGACATTGTGTAGTTTTTAAACACTTGAATTAACTGTATTATATAATGCATGGACACCAAAGTAAAACCTTGTCAAGCAGTGACATTTAAGGATCGCGTTTTACTGAAACATCTTGGAAATTTTAGCTAATTTGATTTTAGTGACATCTTTGGAGCTCTTTTACTGATACTATAAGTCAGAAGCGAGAGGTTAAAGGGCAAAAACTTCACATTTAAACAGCAGGTGATGTATATCTGGTGTATACTGTGGACAAAGAACACTCTGGGTTGTGAAGGAGTTGTTGGTTCATACGTTTATGTAGTATGTGAaaacttttgtattttataataaacaaaataaaataatcccTATA

Function

symbol description
tbpl1 Predicted to enable general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human TBPL1 (TATA-box binding protein like 1).

NR:

description
PREDICTED: TATA box-binding protein-like protein 1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224542.1 True 1490 mRNA 0.42 7 9904223 9908862

Neighbor

gene id symbol gene type direction distance location
rps12 rps12,LOC107671850 coding upstream 67041 9834324 ~ 9837182 (+)
LOC122329332 NA coding upstream 68744 9835395 ~ 9835479 (+)
LOC122329334 NA coding upstream 69053 9835096 ~ 9835170 (+)
sh3bgrl2 sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335 coding upstream 74033 9822809 ~ 9830190 (+)
irak1bp1 irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383 coding upstream 143606 9758867 ~ 9760617 (+)
myb myb,LOC107701741,LOC107549054,LOC107671892,LOC107756348,LOC107571350 coding downstream 86935 9995797 ~ 10005646 (+)
armc1l armc1l,LOC107723767,LOC107671895,LOC107571378,LOC107701743,LOC107756398,LOC107549053 coding downstream 129005 10037867 ~ 10041353 (+)
si:dkey-126g1.9 LOC107549036,LOC107723751,LOC107756364,LOC107572772 coding downstream 141078 10049940 ~ 10053458 (+)
nemp1 LOC107756399,LOC107701744,LOC107549035,LOC107671884,LOC107572777 coding downstream 144784 10053646 ~ 10057473 (+)
pan2 pan2,LOC107723747,LOC107756401 coding downstream 158591 10067453 ~ 10082559 (+)
LOC122328703 NA non-coding upstream 15844 9885045 ~ 9888379 (+)
G156098 NA non-coding upstream 88914 9813217 ~ 9815309 (+)
G156096 NA non-coding upstream 95943 9802696 ~ 9808280 (+)
G156047 NA non-coding upstream 264397 9622479 ~ 9639826 (+)
G156034 NA non-coding upstream 319643 9584169 ~ 9584580 (+)
G156108 sgk1 non-coding downstream 13279 9922141 ~ 9923225 (+)
G156142 NA non-coding downstream 85584 9994446 ~ 9994653 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 225993 10134855 ~ 10145461 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding downstream 253136 10161998 ~ 10163976 (+)
LOC122328771 NA non-coding downstream 345924 10254786 ~ 10256406 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 134603 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 781830 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 802851 8941031 ~ 9101372 (+)
G155799 NA other upstream 1415582 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1570847 8321705 ~ 8333376 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 161918 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 420989 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 506801 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 606117 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 642235 10551097 ~ 10554720 (+)

Expression


Co-expression Network