zgc:56699 (zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049)


Basic Information

Item Value
gene id zgc:56699
gene name zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10121748 ~ 10124211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224543.1
ATGACGAAAcgaattaaagtttttaaatagtgCATCACGTGGTATTTCATAGTCACGGCGATTGATTGACGATCACAGTGGATTGAAGTCGAAGGGGAGGAGAGCACGCGCCGTATCTCACgactacaaaagaaaaaagttCCACCGGGGCACTCAAGGCTGAGCAAACTAACCAGACCTCCAGAAGGAAGCAAGCATGGCCGCTATAAGATTCGGGAGTAGTGTTGGTCCGTCTGGAATAAACTCTGAACATCAGCAGCAAGGCTGGAAAGAAGAGACCGCTTATGAAGACGCCGATGATGCCATTGACCCCAACAGGATTGTACAATGCCCTTATGACAAAAACCACCAGATCAGGGCCTCTCGCTTCCCTTTTCATGTTCTCAAGTGCAGGAAGAACCACCCCAAACTGGCCAGTGAACTGAAGACCTGCCCCTTCAATGCCAGGCACTTGATTCCCAAGCATGAGTTGTCTCATCACATTGCAAACTGTGAAGACAAGAGGATGTTAAATGCTGAAGATGgaaaTGTAGAGTTGCTAGAGAAGTTCCAGGTGCCTGTTAACAACTGGACAAATCCTTCACCCAATGAGGACTGGGAAACAGAAACTGATGATAATGCTGCTATGTTTGTCTGGGGTGAATCCAACAATCAGCTTGCCCAAAACAAGCCAGAGCCGTCTACCACTAACAGTTTATCTGATGGACTTCGGGCACCACGGACTCTTCCATGGAAACTCTgATGCCACCACTGGATGGACTTCACTGGCTAGTCTTActtatttaatacttttgatCCCTGCGTGACTTCTAGCCTAACTTTGTTTAAAgtgtactttatatttttatattttttaattttacagtgttGTGAAGTTTCCTATACAATACGCTGTCTATAACTGTCTAACTGCGTGGTATGCTATGTGTAGAGAGGCTCCTTATTAAAGCAAATAATGTCATATTACAAGCAGAAACCATCAGTGCCTATCTCTCTGGGCTATTTGCtttgaacatttgttttatgaaagTGTTAACCTGATGTATGATTATTAaaggtttctttaaatgcaaa

Function

symbol description
zgc:56699 Predicted to enable metal ion binding activity. Predicted to act upstream of or within spermatogenesis. Is expressed in several structures, including digestive system; hypaxial myotome region; immature eye; pectoral fin; and yolk syncytial layer. Orthologous to several human genes including GTSF1 (gametocyte specific factor 1).

NR:

description
gametocyte-specific factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224543.1 True 1074 mRNA 0.43 8 10121748 10124211

Neighbor

gene id symbol gene type direction distance location
cd63 LOC107723742,LOC107671882,LOC107572785,LOC107701749,LOC107756350,LOC107549048 coding upstream 4792 10108293 ~ 10116956 (+)
mylk2 LOC107671840,LOC107756349,LOC107701711,LOC105903258,LOC107572773,LOC107549024 coding upstream 15056 10099065 ~ 10106692 (+)
tpx2 NA coding upstream 23110 10092768 ~ 10098638 (+)
trappc6b trappc6b,LOC107572779,LOC107756365,LOC107701709,LOC107549033 coding upstream 29296 10090427 ~ 10092452 (+)
pan2 pan2,LOC107723747,LOC107756401 coding upstream 39189 10067453 ~ 10082559 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding downstream 88632 10212843 ~ 10217601 (+)
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding downstream 116100 10240311 ~ 10243841 (+)
LOC122329223 NA coding downstream 123700 10247911 ~ 10257228 (+)
LOC122329250 si:dkey-261h17.1 coding downstream 191874 10316085 ~ 10322007 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding downstream 244242 10368453 ~ 10381390 (+)
G156142 NA non-coding upstream 127095 9994446 ~ 9994653 (+)
G156109 NA non-coding upstream 148214 9880762 ~ 9973534 (+)
G156108 sgk1 non-coding upstream 198523 9922141 ~ 9923225 (+)
LOC122328703 NA non-coding upstream 233369 9885045 ~ 9888379 (+)
G156098 NA non-coding upstream 306439 9813217 ~ 9815309 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 10644 10134855 ~ 10145461 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding downstream 37787 10161998 ~ 10163976 (+)
LOC122328771 NA non-coding downstream 130575 10254786 ~ 10256406 (+)
G156217 NA non-coding downstream 139779 10263990 ~ 10346054 (+)
G156169 NA non-coding downstream 262749 10386960 ~ 10387500 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 31930 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 352128 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 999355 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1020376 8941031 ~ 9101372 (+)
G155799 NA other upstream 1633107 8488086 ~ 8488641 (+)
LOC122328781 pifo other downstream 205640 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 291452 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 390768 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 426886 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 439133 10563344 ~ 10572246 (+)

Expression


Co-expression Network