trappc6b (trappc6b,LOC107572779,LOC107756365,LOC107701709,LOC107549033)


Basic Information

Item Value
gene id trappc6b
gene name trappc6b,LOC107572779,LOC107756365,LOC107701709,LOC107549033
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10090427 ~ 10092452 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224545.1
TCTCagccaaacaggaagtggacCAGATGTGAAGCAGGACCCTAATAGTAAATTAAGGAGCAGTCGAATGCATTGGCATGTTTTAATTAAGGCGATTTAATCGCACAATGAATAGTGTCAGTTTACTGAAGTAATAAGTGATTTATACCCGTAGTCGGTTTGGGTCGCATGTTTGTCGCTTGTCAGTTTCAGTCTGGCTGAACTGGCTCGAGATGGCAGACGAGGCTCTCTTTCAGTTCCTGCATAGTGAAATTATTCAGTATGTCAACAGTGCAGAAACTGGGGACTCGgaGAATGGGCGATGCGTTTCTAAACTCGAGAACATGGGGTTTCGTGTGGGACAAGGACTTATTGAAAGGTTTACCAAGGACACGCCACGTTTTAAAGATGAGCTTGATGTCATGAAGTTTATCTGCAAAGATTTCTGGACCAGTGTTTTTAAGAAGCAAATAGACAACCTGAGAACAAACCACCAGGGTATTTATGTGCTACAAGATAACAAGTTCCGCCTGCTGACCCAACTGTCTGCTGGAAAACAGTATTTGGAGCATGCCCCGAAGTTCTTAGCCTTCACCTGTGGACTGGTCCGAGGAGCACTTTCAAACCTTGGTGTGAAAAGTATAGTCACAGCGGAAGTGTCAGTCATGCCTGCTTgCAAATTCCAGGTGATGATCCAGAAGATATAATTCACTACAACAGAGCGTATTGCTTATATATAACATGTGCATCTTAATTTTATTgccttgtcatttttatattctcttgcccattttattttcactatgattgtttttttttaattggaataaCTTGCAAACTACTGGCATTAAACGTGATTTGACATTCAAAGGTCATGCCTTATTGTACTGTATTGTTAGTATTTTGACATTCATTATTCTCTGTACACATTCACTgtgttttgattattaatttgcACTGATAACATTAAAGATGGAGTCCTAGAA

Function

symbol description
trappc6b Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport; nervous system development; and regulation of GTPase activity. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Is expressed in central nervous system. Used to study syndromic intellectual disability. Orthologous to human TRAPPC6B (trafficking protein particle complex subunit 6B).

NR:

description
PREDICTED: trafficking protein particle complex subunit 6B

GO: NA

KEGG:

id description
K20304 TRAPPC6, TRS33; trafficking protein particle complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224545.1 True 965 mRNA 0.40 6 10090427 10092452

Neighbor

gene id symbol gene type direction distance location
pan2 pan2,LOC107723747,LOC107756401 coding upstream 7868 10067453 ~ 10082559 (+)
nemp1 LOC107756399,LOC107701744,LOC107549035,LOC107671884,LOC107572777 coding upstream 32954 10053646 ~ 10057473 (+)
si:dkey-126g1.9 LOC107549036,LOC107723751,LOC107756364,LOC107572772 coding upstream 36969 10049940 ~ 10053458 (+)
armc1l armc1l,LOC107723767,LOC107671895,LOC107571378,LOC107701743,LOC107756398,LOC107549053 coding upstream 49074 10037867 ~ 10041353 (+)
myb myb,LOC107701741,LOC107549054,LOC107671892,LOC107756348,LOC107571350 coding upstream 84781 9995797 ~ 10005646 (+)
tpx2 NA coding downstream 316 10092768 ~ 10098638 (+)
mylk2 LOC107671840,LOC107756349,LOC107701711,LOC105903258,LOC107572773,LOC107549024 coding downstream 6613 10099065 ~ 10106692 (+)
cd63 LOC107723742,LOC107671882,LOC107572785,LOC107701749,LOC107756350,LOC107549048 coding downstream 15841 10108293 ~ 10116956 (+)
zgc:56699 zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049 coding downstream 29296 10121748 ~ 10124211 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding downstream 120391 10212843 ~ 10217601 (+)
G156142 NA non-coding upstream 95774 9994446 ~ 9994653 (+)
G156109 NA non-coding upstream 116893 9880762 ~ 9973534 (+)
G156108 sgk1 non-coding upstream 167202 9922141 ~ 9923225 (+)
LOC122328703 NA non-coding upstream 202048 9885045 ~ 9888379 (+)
G156098 NA non-coding upstream 275118 9813217 ~ 9815309 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 42403 10134855 ~ 10145461 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding downstream 69546 10161998 ~ 10163976 (+)
LOC122328771 NA non-coding downstream 162334 10254786 ~ 10256406 (+)
G156217 NA non-coding downstream 171538 10263990 ~ 10346054 (+)
G156169 NA non-coding downstream 294508 10386960 ~ 10387500 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 609 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 320807 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 968034 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 989055 8941031 ~ 9101372 (+)
G155799 NA other upstream 1601786 8488086 ~ 8488641 (+)
LOC122328781 pifo other downstream 237399 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 323211 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 422527 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 458645 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 470892 10563344 ~ 10572246 (+)

Expression


Co-expression Network